RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 FAM222BQ8WU58 562 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 POM121Q96HA1 1249 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 ZNF845Q96IR2 970 aaPredicted RBP7.28□□□□□ -1.24
VPS53-214ENST00000572607 ITCHQ96J02 903 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 MRGPRX4Q96LA9 322 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 TEX37Q96LM6 180 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 KLHL15Q96M94 604 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 SLC39A3Q9BRY0 314 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 INPP5KQ9BT40 448 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 CCDC28BQ9BUN5 200 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 LAT2Q9GZY6 243 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 TMEM185BQ9H7F4 350 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 SDR39U1Q9NRG7 319 aaPredicted RBP7.28□□□□□ -1.24
VPS53-214ENST00000572607 SERINC1Q9NRX5 453 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 GLRX2Q9NS18 164 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 ST6GALNAC1Q9NSC7 600 aaPredicted RBP7.28□□□□□ -1.24
VPS53-214ENST00000572607 CRIM1Q9NZV1 1036 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 MKLN1Q9UL63 735 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 ICAM5Q9UMF0 924 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 EDARQ9UNE0 448 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 SPIN1Q9Y657 262 aaPredicted RBP7.28□□□□□ -1.24
VPS53-214ENST00000572607 NCKAP5O14513 1909 aa7.27□□□□□ -1.25
VPS53-214ENST00000572607 PHF3Q92576 2039 aaKnown RBP7.27□□□□□ -1.25
VPS53-214ENST00000572607 TNFSF12-TNFSF13A0A0A6YY99 330 aa7.27□□□□□ -1.25
VPS53-214ENST00000572607 FAM234BA2RU67 622 aa7.27□□□□□ -1.25
VPS53-214ENST00000572607 HMGN4O00479 90 aa7.27□□□□□ -1.25
VPS53-214ENST00000572607 ZNF195O14628 629 aa7.27□□□□□ -1.25
VPS53-214ENST00000572607 TNFSF11O14788 317 aa7.27□□□□□ -1.25
VPS53-214ENST00000572607 CASKO14936 926 aa7.27□□□□□ -1.25
VPS53-214ENST00000572607 CXCL13O43927 109 aa7.27□□□□□ -1.25
VPS53-214ENST00000572607 UBTFL6P0CB48 400 aaPredicted RBP7.27□□□□□ -1.25
VPS53-214ENST00000572607 NR2F1P10589 423 aa7.27□□□□□ -1.25
VPS53-214ENST00000572607 PRKCAP17252 672 aa7.27□□□□□ -1.25
VPS53-214ENST00000572607 PSMA4P25789 261 aaKnown RBP7.27□□□□□ -1.25
VPS53-214ENST00000572607 SLC7A1P30825 629 aa7.27□□□□□ -1.25
VPS53-214ENST00000572607 SFTPDP35247 375 aa7.27□□□□□ -1.25
VPS53-214ENST00000572607 CDKN2CP42773 168 aa7.27□□□□□ -1.25
VPS53-214ENST00000572607 CRATP43155 626 aa7.27□□□□□ -1.25
VPS53-214ENST00000572607 GATA4P43694 442 aa7.27□□□□□ -1.25
VPS53-214ENST00000572607 SLC6A8P48029 635 aa7.27□□□□□ -1.25
VPS53-214ENST00000572607 AQP5P55064 265 aa7.27□□□□□ -1.25
VPS53-214ENST00000572607 CARD18P57730 90 aa7.27□□□□□ -1.25
VPS53-214ENST00000572607 CHRNEQ04844 493 aa7.27□□□□□ -1.25
VPS53-214ENST00000572607 SNTB1Q13884 538 aaKnown RBP7.27□□□□□ -1.25
VPS53-214ENST00000572607 NDUFAF6Q330K2 333 aa7.27□□□□□ -1.25
VPS53-214ENST00000572607 LRRC74BQ6ZQY2 392 aa7.27□□□□□ -1.25
VPS53-214ENST00000572607 CDH24Q86UP0 819 aa7.27□□□□□ -1.25
VPS53-214ENST00000572607 ATP6V1C2Q8NEY4 427 aa7.27□□□□□ -1.25
VPS53-214ENST00000572607 POC1BQ8TC44 478 aa7.27□□□□□ -1.25
VPS53-214ENST00000572607 PNPT1Q8TCS8 783 aaKnown RBP7.27□□□□□ -1.25
VPS53-214ENST00000572607 GPR119Q8TDV5 335 aa7.27□□□□□ -1.25
VPS53-214ENST00000572607 ST8SIA1Q92185 356 aa7.27□□□□□ -1.25
VPS53-214ENST00000572607 CPNE4Q96A23 557 aaPredicted RBP7.27□□□□□ -1.25
VPS53-214ENST00000572607 ARSGQ96EG1 525 aa7.27□□□□□ -1.25
VPS53-214ENST00000572607 GMPPAQ96IJ6 420 aaPredicted RBP7.27□□□□□ -1.25
VPS53-214ENST00000572607 MAGEB18Q96M61 343 aa7.27□□□□□ -1.25
VPS53-214ENST00000572607 TRNT1Q96Q11 434 aaKnown RBP7.27□□□□□ -1.25
VPS53-214ENST00000572607 THUMPD3Q9BV44 507 aaKnown RBP7.27□□□□□ -1.25
VPS53-214ENST00000572607 RAD21L1Q9H4I0 556 aa7.27□□□□□ -1.25
VPS53-214ENST00000572607 RABEP2Q9H5N1 569 aa7.27□□□□□ -1.25
VPS53-214ENST00000572607 RNF122Q9H9V4 155 aa7.27□□□□□ -1.25
VPS53-214ENST00000572607 SLCO1B3Q9NPD5 702 aa7.27□□□□□ -1.25
VPS53-214ENST00000572607 THUMPD1Q9NXG2 353 aaKnown RBP7.27□□□□□ -1.25
VPS53-214ENST00000572607 DNAJB12Q9NXW2 375 aaKnown RBP7.27□□□□□ -1.25
VPS53-214ENST00000572607 GALNT8Q9NY28 637 aa7.27□□□□□ -1.25
VPS53-214ENST00000572607 CALML5Q9NZT1 146 aa7.27□□□□□ -1.25
VPS53-214ENST00000572607 JKAMPQ9P055 326 aa7.27□□□□□ -1.25
VPS53-214ENST00000572607 P2RX2Q9UBL9 471 aa7.27□□□□□ -1.25
VPS53-214ENST00000572607 NDRG3Q9UGV2 375 aa7.27□□□□□ -1.25
VPS53-214ENST00000572607 A8MXE2 369 aa7.26□□□□□ -1.25
VPS53-214ENST00000572607 NR5A2O00482 541 aa7.26□□□□□ -1.25
VPS53-214ENST00000572607 ADAMDEC1O15204 470 aa7.26□□□□□ -1.25
VPS53-214ENST00000572607 TNFSF13O75888 250 aa7.26□□□□□ -1.25
VPS53-214ENST00000572607 GOSR1O95249 250 aa7.26□□□□□ -1.25
VPS53-214ENST00000572607 H6PDO95479 791 aa7.26□□□□□ -1.25
VPS53-214ENST00000572607 OPN1LWP04000 364 aa7.26□□□□□ -1.25
VPS53-214ENST00000572607 DBIP07108 87 aaKnown RBP7.26□□□□□ -1.25
VPS53-214ENST00000572607 ZCCHC18P0CG32 403 aa7.26□□□□□ -1.25
VPS53-214ENST00000572607 CD8BP10966 210 aa7.26□□□□□ -1.25
VPS53-214ENST00000572607 POU2F1P14859 743 aa7.26□□□□□ -1.25
VPS53-214ENST00000572607 IL7RP16871 459 aa7.26□□□□□ -1.25
VPS53-214ENST00000572607 IDH3AP50213 366 aa7.26□□□□□ -1.25
VPS53-214ENST00000572607 CRISP3P54108 245 aa7.26□□□□□ -1.25
VPS53-214ENST00000572607 DSTNP60981 165 aa7.26□□□□□ -1.25
VPS53-214ENST00000572607 MERTKQ12866 999 aa7.26□□□□□ -1.25
VPS53-214ENST00000572607 SKP2Q13309 424 aa7.26□□□□□ -1.25
VPS53-214ENST00000572607 SQLEQ14534 574 aa7.26□□□□□ -1.25
VPS53-214ENST00000572607 RNPS1Q15287 305 aaKnown RBP7.26□□□□□ -1.25
VPS53-214ENST00000572607 SYPL1Q16563 259 aa7.26□□□□□ -1.25
VPS53-214ENST00000572607 TMEM176BQ3YBM2 270 aaPredicted RBP7.26□□□□□ -1.25
VPS53-214ENST00000572607 TMEM201Q5SNT2 666 aa7.26□□□□□ -1.25
VPS53-214ENST00000572607 C3orf33Q6P1S2 294 aa7.26□□□□□ -1.25
VPS53-214ENST00000572607 VWA1Q6PCB0 445 aa7.26□□□□□ -1.25
VPS53-214ENST00000572607 FRRS1Q6ZNA5 592 aa7.26□□□□□ -1.25
VPS53-214ENST00000572607 FAM214BQ7L5A3 538 aa7.26□□□□□ -1.25
VPS53-214ENST00000572607 OLIG3Q7RTU3 272 aa7.26□□□□□ -1.25
VPS53-214ENST00000572607 STK32CQ86UX6 486 aa7.26□□□□□ -1.25
VPS53-214ENST00000572607 CMIPQ8IY22 773 aa7.26□□□□□ -1.25
VPS53-214ENST00000572607 PEX5LQ8IYB4 626 aa7.26□□□□□ -1.25
VPS53-214ENST00000572607 ARFGAP2Q8N6H7 521 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms