RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 ZBTB8AQ96BR9 441 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 S100PBPQ96BU1 408 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 PPCDCQ96CD2 204 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 ZBED6CLQ96FA7 236 aaPredicted RBP5.98□□□□□ -1.45
VPS53-213ENST00000572334 PLPPR2Q96GM1 343 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 SH3YL1Q96HL8 342 aaPredicted RBP5.98□□□□□ -1.45
VPS53-213ENST00000572334 C3orf30Q96M34 536 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 KLHL15Q96M94 604 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 MS4A4EQ96PG1 132 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 ZNF317Q96PQ6 595 aaPredicted RBP5.98□□□□□ -1.45
VPS53-213ENST00000572334 ELAC2Q9BQ52 826 aaKnown RBP5.98□□□□□ -1.45
VPS53-213ENST00000572334 BDH2Q9BUT1 245 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 ACTR6Q9GZN1 396 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 OR10A4Q9H209 315 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 PIGUQ9H490 435 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 SERHL2Q9H4I8 314 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 CXorf36Q9H7Y0 433 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 C3orf14Q9HBI5 128 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 UBQLN4Q9NRR5 601 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 GPATCH2Q9NW75 528 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 PTTG2Q9NZH5 202 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 ATP6V1HQ9UI12 483 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 KCNE5Q9UJ90 142 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 MRTO4Q9UKD2 239 aaKnown RBP5.98□□□□□ -1.45
VPS53-213ENST00000572334 ICAM5Q9UMF0 924 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 GPR52Q9Y2T5 361 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 EMC9Q9Y3B6 208 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 CENPVL1A0A0U1RR11 272 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 FAM171A2A8MVW0 826 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 ETV2O00321 342 aaPredicted RBP5.97□□□□□ -1.45
VPS53-213ENST00000572334 SCAMP2O15127 329 aaKnown RBP5.97□□□□□ -1.45
VPS53-213ENST00000572334 RGS14O43566 566 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 CCDC22O60826 627 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 DNAJA2O60884 412 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 UBOX5O94941 541 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 SOD3P08294 240 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 LAMP1P11279 417 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 PPP3CBP16298 524 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 PRKCAP17252 672 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 ENPP1P22413 925 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 LCN1P31025 176 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 GPC1P35052 558 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 SFTPDP35247 375 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 NR1H2P55055 460 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 CTBP2P56545 445 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 LSAMPQ13449 338 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 TNK1Q13470 666 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 LASP1Q14847 261 aaKnown RBP5.97□□□□□ -1.45
VPS53-213ENST00000572334 PTGR1Q14914 329 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 NDUFAF6Q330K2 333 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 VPS26BQ4G0F5 336 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 PDCD4Q53EL6 469 aaKnown RBP5.97□□□□□ -1.45
VPS53-213ENST00000572334 SLC25A53Q5H9E4 307 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 CFAP157Q5JU67 520 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 NCMAPQ5T1S8 102 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 HBMQ6B0K9 141 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 PPP4R4Q6NUP7 873 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 ADAM5Q6NVV9 412 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 CDC73Q6P1J9 531 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 DNM1P46Q6ZS02 220 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 BEND4Q6ZU67 534 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 WFDC8Q8IUA0 241 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 MISPQ8IVT2 679 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 TUSC5Q8IXB3 177 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 RIMKLAQ8IXN7 391 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 LILRA2Q8N149 483 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 FBXO27Q8NI29 283 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 GPR119Q8TDV5 335 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 TWIST2Q8WVJ9 160 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 AKAP1Q92667 903 aaKnown RBP eCLIP5.97□□□□□ -1.45
VPS53-213ENST00000572334 ZNF75CPQ92670 426 aaPredicted RBP5.97□□□□□ -1.45
VPS53-213ENST00000572334 MTERF3Q96E29 417 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 LRRC37BQ96QE4 947 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 STACQ99469 402 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 MECRQ9BV79 373 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 BTBD2Q9BX70 525 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 PRRG4Q9BZD6 226 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 C12orf49Q9H741 205 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 DUSP22Q9NRW4 184 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 GLRX2Q9NS18 164 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 MKS1Q9NXB0 559 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 PAQR5Q9NXK6 330 aaPredicted RBP5.97□□□□□ -1.45
VPS53-213ENST00000572334 GIN1Q9NXP7 522 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 SH3BP4Q9P0V3 963 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 KLHL13Q9P2N7 655 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 MCTS1Q9ULC4 181 aaKnown RBP5.97□□□□□ -1.45
VPS53-213ENST00000572334 CARD8Q9Y2G2 431 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 FIS1Q9Y3D6 152 aa5.97□□□□□ -1.45
VPS53-213ENST00000572334 A0A096LNT2 108 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 IGHV3-15A0A0B4J1V0 119 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 A0A1W2PNR3 127 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 DPRXA6NFQ7 191 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 SMIM23A6NLE4 172 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 SCDO00767 359 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 COPEO14579 308 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 ZNF195O14628 629 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 PIP5K1BO14986 540 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 NPHS1O60500 1241 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 TRIM13O60858 407 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 NDUFS7O75251 213 aa5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms