RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 ZNF350Q9GZX5 532 aa14.27□□□□□ -0.12
CLN3-229ENST00000567963 EXD2Q9NVH0 621 aa14.27□□□□□ -0.12
CLN3-229ENST00000567963 PCDHGB4Q9UN71 923 aa14.27□□□□□ -0.12
CLN3-229ENST00000567963 LAMP3Q9UQV4 416 aa14.27□□□□□ -0.12
CLN3-229ENST00000567963 FN1P02751 2386 aaKnown RBP14.27□□□□□ -0.13
CLN3-229ENST00000567963 ABCA2Q9BZC7 2435 aa14.27□□□□□ -0.13
CLN3-229ENST00000567963 USF3Q68DE3 2245 aa14.27□□□□□ -0.13
CLN3-229ENST00000567963 CYTIPO60759 359 aa14.26□□□□□ -0.13
CLN3-229ENST00000567963 CYP7B1O75881 506 aa14.26□□□□□ -0.13
CLN3-229ENST00000567963 CSTAP01040 98 aa14.26□□□□□ -0.13
CLN3-229ENST00000567963 SERPINE1P05121 402 aa14.26□□□□□ -0.13
CLN3-229ENST00000567963 CASP9P55211 416 aa14.26□□□□□ -0.13
CLN3-229ENST00000567963 SESN3P58005 492 aa14.26□□□□□ -0.13
CLN3-229ENST00000567963 ABCE1P61221 599 aaKnown RBP14.26□□□□□ -0.13
CLN3-229ENST00000567963 RASGEF1BQ0VAM2 473 aa14.26□□□□□ -0.13
CLN3-229ENST00000567963 CHI3L2Q15782 390 aa14.26□□□□□ -0.13
CLN3-229ENST00000567963 AP1ARQ63HQ0 302 aa14.26□□□□□ -0.13
CLN3-229ENST00000567963 HEPHL1Q6MZM0 1159 aa14.26□□□□□ -0.13
CLN3-229ENST00000567963 WDR93Q6P2C0 686 aa14.26□□□□□ -0.13
CLN3-229ENST00000567963 Q6ZT83 130 aa14.26□□□□□ -0.13
CLN3-229ENST00000567963 OLIG3Q7RTU3 272 aa14.26□□□□□ -0.13
CLN3-229ENST00000567963 C16orf62Q7Z3J2 963 aa14.26□□□□□ -0.13
CLN3-229ENST00000567963 OR4A15Q8NGL6 344 aa14.26□□□□□ -0.13
CLN3-229ENST00000567963 ST8SIA1Q92185 356 aa14.26□□□□□ -0.13
CLN3-229ENST00000567963 OR5B2Q96R09 309 aa14.26□□□□□ -0.13
CLN3-229ENST00000567963 USB1Q9BQ65 265 aaKnown RBP14.26□□□□□ -0.13
CLN3-229ENST00000567963 DPY30Q9C005 99 aa14.26□□□□□ -0.13
CLN3-229ENST00000567963 QRSL1Q9H0R6 528 aaKnown RBP14.26□□□□□ -0.13
CLN3-229ENST00000567963 OR51I1Q9H343 314 aa14.26□□□□□ -0.13
CLN3-229ENST00000567963 ESRP2Q9H6T0 727 aaKnown RBP14.26□□□□□ -0.13
CLN3-229ENST00000567963 NGBQ9NPG2 151 aa14.26□□□□□ -0.13
CLN3-229ENST00000567963 RNF115Q9Y4L5 304 aa14.26□□□□□ -0.13
CLN3-229ENST00000567963 PRSS51A0A1B0GVH4 220 aa14.25□□□□□ -0.13
CLN3-229ENST00000567963 C9JVG2 144 aa14.25□□□□□ -0.13
CLN3-229ENST00000567963 SMAD9O15198 467 aaKnown RBP14.25□□□□□ -0.13
CLN3-229ENST00000567963 BIRC5O15392 142 aa14.25□□□□□ -0.13
CLN3-229ENST00000567963 H6PDO95479 791 aa14.25□□□□□ -0.13
CLN3-229ENST00000567963 GUSBP08236 651 aa14.25□□□□□ -0.13
CLN3-229ENST00000567963 MYZAPP0CAP1 466 aa14.25□□□□□ -0.13
CLN3-229ENST00000567963 UBTFL6P0CB48 400 aaPredicted RBP14.25□□□□□ -0.13
CLN3-229ENST00000567963 OR12D1P0DN82 309 aa14.25□□□□□ -0.13
CLN3-229ENST00000567963 PGCP20142 388 aa14.25□□□□□ -0.13
CLN3-229ENST00000567963 OR3A2P47893 321 aa14.25□□□□□ -0.13
CLN3-229ENST00000567963 ATP5J2P56134 94 aa14.25□□□□□ -0.13
CLN3-229ENST00000567963 PHC1P78364 1004 aa14.25□□□□□ -0.13
CLN3-229ENST00000567963 MAPK14Q16539 360 aa14.25□□□□□ -0.13
CLN3-229ENST00000567963 EIF3MQ7L2H7 374 aaKnown RBP14.25□□□□□ -0.13
CLN3-229ENST00000567963 ZNF619Q8N2I2 560 aa14.25□□□□□ -0.13
CLN3-229ENST00000567963 XAGE5Q8WWM1 108 aa14.25□□□□□ -0.13
CLN3-229ENST00000567963 TMEM234Q8WY98 164 aa14.25□□□□□ -0.13
CLN3-229ENST00000567963 ZNF75CPQ92670 426 aaPredicted RBP14.25□□□□□ -0.13
CLN3-229ENST00000567963 ZNF775Q96BV0 537 aaPredicted RBP14.25□□□□□ -0.13
CLN3-229ENST00000567963 SERINC1Q9NRX5 453 aa14.25□□□□□ -0.13
CLN3-229ENST00000567963 EPB41L3Q9Y2J2 1087 aaPredicted RBP14.25□□□□□ -0.13
CLN3-229ENST00000567963 RAP2CQ9Y3L5 183 aa14.25□□□□□ -0.13
CLN3-229ENST00000567963 ZNF724A8MTY0 619 aa14.25□□□□□ -0.13
CLN3-229ENST00000567963 ANKRD28O15084 1053 aa14.25□□□□□ -0.13
CLN3-229ENST00000567963 CLOCKO15516 846 aa14.25□□□□□ -0.13
CLN3-229ENST00000567963 AGR2O95994 175 aa14.25□□□□□ -0.13
CLN3-229ENST00000567963 CD3EP07766 207 aa14.25□□□□□ -0.13
CLN3-229ENST00000567963 UQCRC2P22695 453 aa14.25□□□□□ -0.13
CLN3-229ENST00000567963 PGM1P36871 562 aa14.25□□□□□ -0.13
CLN3-229ENST00000567963 DIO1P49895 249 aa14.25□□□□□ -0.13
CLN3-229ENST00000567963 RPL14P50914 215 aaKnown RBP14.25□□□□□ -0.13
CLN3-229ENST00000567963 CAPRIN1Q14444 709 aaKnown RBP14.25□□□□□ -0.13
CLN3-229ENST00000567963 KRT71Q3SY84 523 aa14.25□□□□□ -0.13
CLN3-229ENST00000567963 ANXA8L1Q5VT79 327 aa14.25□□□□□ -0.13
CLN3-229ENST00000567963 TYW3Q6IPR3 259 aaKnown RBP14.25□□□□□ -0.13
CLN3-229ENST00000567963 SEZ6L2Q6UXD5 910 aa14.25□□□□□ -0.13
CLN3-229ENST00000567963 TMPPEQ6ZT21 453 aa14.25□□□□□ -0.13
CLN3-229ENST00000567963 BHLHA15Q7RTS1 189 aaPredicted RBP14.25□□□□□ -0.13
CLN3-229ENST00000567963 ATG4DQ86TL0 474 aaPredicted RBP14.25□□□□□ -0.13
CLN3-229ENST00000567963 ANKRD46Q86W74 232 aa14.25□□□□□ -0.13
CLN3-229ENST00000567963 MREGQ8N565 214 aa14.25□□□□□ -0.13
CLN3-229ENST00000567963 VPS37AQ8NEZ2 397 aa14.25□□□□□ -0.13
CLN3-229ENST00000567963 PIWIL2Q8TC59 973 aaKnown RBP14.25□□□□□ -0.13
CLN3-229ENST00000567963 OIT3Q8WWZ8 545 aa14.25□□□□□ -0.13
CLN3-229ENST00000567963 FBXW5Q969U6 566 aa14.25□□□□□ -0.13
CLN3-229ENST00000567963 TESCQ96BS2 214 aa14.25□□□□□ -0.13
CLN3-229ENST00000567963 ZNF300Q96RE9 604 aaPredicted RBP14.25□□□□□ -0.13
CLN3-229ENST00000567963 SORT1Q99523 831 aa14.25□□□□□ -0.13
CLN3-229ENST00000567963 POTEKPQ9BYX7 375 aa14.25□□□□□ -0.13
CLN3-229ENST00000567963 SAP130Q9H0E3 1048 aa14.25□□□□□ -0.13
CLN3-229ENST00000567963 SSU72Q9NP77 194 aaKnown RBP14.25□□□□□ -0.13
CLN3-229ENST00000567963 ACER3Q9NUN7 267 aa14.25□□□□□ -0.13
CLN3-229ENST00000567963 PRSS50Q9UI38 385 aa14.25□□□□□ -0.13
CLN3-229ENST00000567963 OVOL3O00110 214 aa14.24□□□□□ -0.13
CLN3-229ENST00000567963 RGS16O15492 202 aaPredicted RBP14.24□□□□□ -0.13
CLN3-229ENST00000567963 KIAA0513O60268 411 aa14.24□□□□□ -0.13
CLN3-229ENST00000567963 SNUPNO95149 360 aaKnown RBP14.24□□□□□ -0.13
CLN3-229ENST00000567963 CPSF4O95639 269 aaKnown RBP14.24□□□□□ -0.13
CLN3-229ENST00000567963 DANCRP0C864 163 aa14.24□□□□□ -0.13
CLN3-229ENST00000567963 DHRS4L1P0CG22 281 aa14.24□□□□□ -0.13
CLN3-229ENST00000567963 EDNRAP25101 427 aa14.24□□□□□ -0.13
CLN3-229ENST00000567963 SLC1A6P48664 564 aa14.24□□□□□ -0.13
CLN3-229ENST00000567963 RPS4XP62701 263 aaKnown RBP14.24□□□□□ -0.13
CLN3-229ENST00000567963 MERTKQ12866 999 aa14.24□□□□□ -0.13
CLN3-229ENST00000567963 CASP8Q14790 479 aa14.24□□□□□ -0.13
CLN3-229ENST00000567963 SYT14P1Q58G82 188 aa14.24□□□□□ -0.13
CLN3-229ENST00000567963 ATAD3BQ5T9A4 648 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms