RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 VKORC1Q9BQB6 163 aa17.62■□□□□ 0.41
CLN3-225ENST00000566824 PRR14Q9BWN1 585 aa17.62■□□□□ 0.41
CLN3-225ENST00000566824 ACER3Q9NUN7 267 aa17.62■□□□□ 0.41
CLN3-225ENST00000566824 ZNF232Q9UNY5 417 aa17.62■□□□□ 0.41
CLN3-225ENST00000566824 WIPF3A6NGB9 483 aa17.61■□□□□ 0.41
CLN3-225ENST00000566824 FAM220BPB1ANY3 271 aa17.61■□□□□ 0.41
CLN3-225ENST00000566824 H0Y3Z8 333 aa17.61■□□□□ 0.41
CLN3-225ENST00000566824 WDR1O75083 606 aa17.61■□□□□ 0.41
CLN3-225ENST00000566824 ESRRAP11474 423 aaPredicted RBP17.61■□□□□ 0.41
CLN3-225ENST00000566824 PGCP20142 388 aa17.61■□□□□ 0.41
CLN3-225ENST00000566824 PRKAR1BP31321 381 aa17.61■□□□□ 0.41
CLN3-225ENST00000566824 GCKP35557 465 aa17.61■□□□□ 0.41
CLN3-225ENST00000566824 GSK3BP49841 420 aa17.61■□□□□ 0.41
CLN3-225ENST00000566824 PMPCAQ10713 525 aa17.61■□□□□ 0.41
CLN3-225ENST00000566824 BCL2A1Q16548 175 aa17.61■□□□□ 0.41
CLN3-225ENST00000566824 POMZP3Q6PJE2 187 aa17.61■□□□□ 0.41
CLN3-225ENST00000566824 PLEKHM3Q6ZWE6 761 aa17.61■□□□□ 0.41
CLN3-225ENST00000566824 KRT73Q86Y46 540 aa17.61■□□□□ 0.41
CLN3-225ENST00000566824 ARMC8Q8IUR7 673 aa17.61■□□□□ 0.41
CLN3-225ENST00000566824 MICU2Q8IYU8 434 aa17.61■□□□□ 0.41
CLN3-225ENST00000566824 ATP6V1C2Q8NEY4 427 aa17.61■□□□□ 0.41
CLN3-225ENST00000566824 TTYH2Q9BSA4 534 aa17.61■□□□□ 0.41
CLN3-225ENST00000566824 AP4B1Q9Y6B7 739 aa17.61■□□□□ 0.41
CLN3-225ENST00000566824 MPDZO75970 2070 aa17.61■□□□□ 0.41
CLN3-225ENST00000566824 PTPN13Q12923 2485 aa17.6■□□□□ 0.41
CLN3-225ENST00000566824 A0A0J9YW62 118 aa17.6■□□□□ 0.41
CLN3-225ENST00000566824 CFAP73A6NFT4 308 aa17.6■□□□□ 0.41
CLN3-225ENST00000566824 FIGNL2A6NMB9 653 aa17.6■□□□□ 0.41
CLN3-225ENST00000566824 AHRRA9YTQ3 701 aa17.6■□□□□ 0.41
CLN3-225ENST00000566824 TMEM229AB2RXF0 380 aa17.6■□□□□ 0.41
CLN3-225ENST00000566824 TOXO94900 526 aa17.6■□□□□ 0.41
CLN3-225ENST00000566824 CD247P20963 164 aa17.6■□□□□ 0.41
CLN3-225ENST00000566824 ZNF136P52737 540 aa17.6■□□□□ 0.41
CLN3-225ENST00000566824 MERTKQ12866 999 aa17.6■□□□□ 0.41
CLN3-225ENST00000566824 DUSP7Q16829 419 aa17.6■□□□□ 0.41
CLN3-225ENST00000566824 CTU2Q2VPK5 515 aaKnown RBP17.6■□□□□ 0.41
CLN3-225ENST00000566824 CCDC80Q76M96 950 aa17.6■□□□□ 0.41
CLN3-225ENST00000566824 ARPINQ7Z6K5 226 aa17.6■□□□□ 0.41
CLN3-225ENST00000566824 ADGRE4PQ86SQ3 457 aa17.6■□□□□ 0.41
CLN3-225ENST00000566824 PM20D2Q8IYS1 436 aa17.6■□□□□ 0.41
CLN3-225ENST00000566824 OR2T12Q8NG77 320 aa17.6■□□□□ 0.41
CLN3-225ENST00000566824 ZNF563Q8TA94 476 aa17.6■□□□□ 0.41
CLN3-225ENST00000566824 ST8SIA1Q92185 356 aa17.6■□□□□ 0.41
CLN3-225ENST00000566824 ZNF845Q96IR2 970 aaPredicted RBP17.6■□□□□ 0.41
CLN3-225ENST00000566824 ADGRG7Q96K78 797 aa17.6■□□□□ 0.41
CLN3-225ENST00000566824 MRGPRX4Q96LA9 322 aa17.6■□□□□ 0.41
CLN3-225ENST00000566824 TRIB1Q96RU8 372 aa17.6■□□□□ 0.41
CLN3-225ENST00000566824 ZNF607Q96SK3 696 aa17.6■□□□□ 0.41
CLN3-225ENST00000566824 CTPS2Q9NRF8 586 aa17.6■□□□□ 0.41
CLN3-225ENST00000566824 TMEM181Q9P2C4 612 aa17.6■□□□□ 0.41
CLN3-225ENST00000566824 ABCD2Q9UBJ2 740 aa17.6■□□□□ 0.41
CLN3-225ENST00000566824 CLCA1A8K7I4 914 aa17.59■□□□□ 0.41
CLN3-225ENST00000566824 GP1BBP13224 206 aa17.59■□□□□ 0.41
CLN3-225ENST00000566824 SFTPDP35247 375 aa17.59■□□□□ 0.41
CLN3-225ENST00000566824 EIF1P41567 113 aaKnown RBP17.59■□□□□ 0.41
CLN3-225ENST00000566824 SLC6A8P48029 635 aa17.59■□□□□ 0.41
CLN3-225ENST00000566824 DLX5P56178 289 aa17.59■□□□□ 0.41
CLN3-225ENST00000566824 RAC1P63000 192 aa17.59■□□□□ 0.41
CLN3-225ENST00000566824 B3GNT6Q6ZMB0 384 aa17.59■□□□□ 0.41
CLN3-225ENST00000566824 LACC1Q8IV20 430 aa17.59■□□□□ 0.41
CLN3-225ENST00000566824 LILRA2Q8N149 483 aa17.59■□□□□ 0.41
CLN3-225ENST00000566824 RNF148Q8N7C7 305 aa17.59■□□□□ 0.41
CLN3-225ENST00000566824 OR4D11Q8NGI4 311 aa17.59■□□□□ 0.41
CLN3-225ENST00000566824 ZPLD1Q8TCW7 415 aa17.59■□□□□ 0.41
CLN3-225ENST00000566824 NSL1Q96IY1 281 aa17.59■□□□□ 0.41
CLN3-225ENST00000566824 ICE1Q9Y2F5 2266 aa17.59■□□□□ 0.41
CLN3-225ENST00000566824 ELOVL7A1L3X0 281 aa17.58■□□□□ 0.4
CLN3-225ENST00000566824 LINC01387J3KSC0 135 aa17.58■□□□□ 0.4
CLN3-225ENST00000566824 FAAHO00519 579 aa17.58■□□□□ 0.4
CLN3-225ENST00000566824 EIF1AYO14602 144 aaKnown RBP17.58■□□□□ 0.4
CLN3-225ENST00000566824 TPST2O60704 377 aa17.58■□□□□ 0.4
CLN3-225ENST00000566824 SERPINB7O75635 380 aa17.58■□□□□ 0.4
CLN3-225ENST00000566824 GABRA1P14867 456 aa17.58■□□□□ 0.4
CLN3-225ENST00000566824 CCNA2P20248 432 aa17.58■□□□□ 0.4
CLN3-225ENST00000566824 HTR2AP28223 471 aa17.58■□□□□ 0.4
CLN3-225ENST00000566824 ADH6P28332 368 aa17.58■□□□□ 0.4
CLN3-225ENST00000566824 CPOXP36551 454 aa17.58■□□□□ 0.4
CLN3-225ENST00000566824 KCNJ5P48544 419 aa17.58■□□□□ 0.4
CLN3-225ENST00000566824 VEZF1Q14119 521 aa17.58■□□□□ 0.4
CLN3-225ENST00000566824 RINLQ6ZS11 566 aa17.58■□□□□ 0.4
CLN3-225ENST00000566824 PATL1Q86TB9 770 aaKnown RBP17.58■□□□□ 0.4
CLN3-225ENST00000566824 ADGRG3Q86Y34 549 aa17.58■□□□□ 0.4
CLN3-225ENST00000566824 CCDC71Q8IV32 467 aaPredicted RBP17.58■□□□□ 0.4
CLN3-225ENST00000566824 SLC30A8Q8IWU4 369 aa17.58■□□□□ 0.4
CLN3-225ENST00000566824 ZNF440Q8IYI8 595 aa17.58■□□□□ 0.4
CLN3-225ENST00000566824 C9orf106Q8NAJ2 232 aa17.58■□□□□ 0.4
CLN3-225ENST00000566824 NAXEQ8NCW5 288 aa17.58■□□□□ 0.4
CLN3-225ENST00000566824 TNIP2Q8NFZ5 429 aa17.58■□□□□ 0.4
CLN3-225ENST00000566824 OR10Q1Q8NGQ4 319 aa17.58■□□□□ 0.4
CLN3-225ENST00000566824 SSC4DQ8WTU2 575 aa17.58■□□□□ 0.4
CLN3-225ENST00000566824 PHF10Q8WUB8 498 aaKnown RBP17.58■□□□□ 0.4
CLN3-225ENST00000566824 ITLN2Q8WWU7 325 aaPredicted RBP17.58■□□□□ 0.4
CLN3-225ENST00000566824 DNAJA3Q96EY1 480 aa17.58■□□□□ 0.4
CLN3-225ENST00000566824 SPATA5L1Q9BVQ7 753 aa17.58■□□□□ 0.4
CLN3-225ENST00000566824 PINK1Q9BXM7 581 aa17.58■□□□□ 0.4
CLN3-225ENST00000566824 CACYBPQ9HB71 228 aaKnown RBP17.58■□□□□ 0.4
CLN3-225ENST00000566824 CLCF1Q9UBD9 225 aa17.58■□□□□ 0.4
CLN3-225ENST00000566824 INTS1Q8N201 2190 aaKnown RBP17.58■□□□□ 0.4
CLN3-225ENST00000566824 CACNA1CQ13936 2221 aa17.57■□□□□ 0.4
CLN3-225ENST00000566824 PRORSD1PA6NEY8 169 aa17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 118.2 ms