RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 TMEM234Q8WY98 164 aa15.58■□□□□ 0.08
CLN3-217ENST00000565354 HOPXQ9BPY8 73 aaPredicted RBP15.58■□□□□ 0.08
CLN3-217ENST00000565354 TAGLN3Q9UI15 199 aa15.58■□□□□ 0.08
CLN3-217ENST00000565354 SLC13A4Q9UKG4 626 aa15.58■□□□□ 0.08
CLN3-217ENST00000565354 FREM3P0C091 2139 aa15.58■□□□□ 0.08
CLN3-217ENST00000565354 SHISA8B8ZZ34 492 aa15.57■□□□□ 0.08
CLN3-217ENST00000565354 E9PLN8 166 aa15.57■□□□□ 0.08
CLN3-217ENST00000565354 SERPINB7O75635 380 aa15.57■□□□□ 0.08
CLN3-217ENST00000565354 ME2P23368 584 aa15.57■□□□□ 0.08
CLN3-217ENST00000565354 ACVR2AP27037 513 aa15.57■□□□□ 0.08
CLN3-217ENST00000565354 EIF1P41567 113 aaKnown RBP15.57■□□□□ 0.08
CLN3-217ENST00000565354 STARP49675 285 aa15.57■□□□□ 0.08
CLN3-217ENST00000565354 MXRA7P84157 204 aa15.57■□□□□ 0.08
CLN3-217ENST00000565354 FOXF1Q12946 379 aa15.57■□□□□ 0.08
CLN3-217ENST00000565354 QPRTQ15274 297 aa15.57■□□□□ 0.08
CLN3-217ENST00000565354 DCST1Q5T197 706 aa15.57■□□□□ 0.08
CLN3-217ENST00000565354 C1orf185Q5T7R7 199 aa15.57■□□□□ 0.08
CLN3-217ENST00000565354 TMEM211Q6ICI0 200 aa15.57■□□□□ 0.08
CLN3-217ENST00000565354 ERICH5Q6P6B1 374 aa15.57■□□□□ 0.08
CLN3-217ENST00000565354 NET1Q7Z628 596 aaPredicted RBP15.57■□□□□ 0.08
CLN3-217ENST00000565354 PTOV1Q86YD1 416 aa15.57■□□□□ 0.08
CLN3-217ENST00000565354 ZZZ3Q8IYH5 903 aa15.57■□□□□ 0.08
CLN3-217ENST00000565354 ZNF440Q8IYI8 595 aa15.57■□□□□ 0.08
CLN3-217ENST00000565354 UBQLNLQ8IYU4 475 aa15.57■□□□□ 0.08
CLN3-217ENST00000565354 MEIOBQ8N635 442 aa15.57■□□□□ 0.08
CLN3-217ENST00000565354 SLC26A7Q8TE54 656 aa15.57■□□□□ 0.08
CLN3-217ENST00000565354 CNOT9Q92600 299 aaKnown RBP15.57■□□□□ 0.08
CLN3-217ENST00000565354 SDCCAG3Q96C92 435 aa15.57■□□□□ 0.08
CLN3-217ENST00000565354 ARSGQ96EG1 525 aa15.57■□□□□ 0.08
CLN3-217ENST00000565354 RNF145Q96MT1 663 aa15.57■□□□□ 0.08
CLN3-217ENST00000565354 DMRTA2Q96SC8 542 aa15.57■□□□□ 0.08
CLN3-217ENST00000565354 VKORC1Q9BQB6 163 aa15.57■□□□□ 0.08
CLN3-217ENST00000565354 TMUB1Q9BVT8 246 aa15.57■□□□□ 0.08
CLN3-217ENST00000565354 EXOSC3Q9NQT5 275 aaKnown RBP15.57■□□□□ 0.08
CLN3-217ENST00000565354 GPC6Q9Y625 555 aaPredicted RBP15.57■□□□□ 0.08
CLN3-217ENST00000565354 ZNF407Q9C0G0 2248 aa15.56■□□□□ 0.08
CLN3-217ENST00000565354 PRORSD1PA6NEY8 169 aa15.56■□□□□ 0.08
CLN3-217ENST00000565354 AHRRA9YTQ3 701 aa15.56■□□□□ 0.08
CLN3-217ENST00000565354 SEC14L5O43304 696 aa15.56■□□□□ 0.08
CLN3-217ENST00000565354 HOXD4P09016 255 aaPredicted RBP15.56■□□□□ 0.08
CLN3-217ENST00000565354 LINGO3P0C6S8 592 aa15.56■□□□□ 0.08
CLN3-217ENST00000565354 CD99P14209 185 aa15.56■□□□□ 0.08
CLN3-217ENST00000565354 PCGF2P35227 344 aa15.56■□□□□ 0.08
CLN3-217ENST00000565354 B3GALT5-AS1P59052 145 aa15.56■□□□□ 0.08
CLN3-217ENST00000565354 ADRM1Q16186 407 aa15.56■□□□□ 0.08
CLN3-217ENST00000565354 VMACQ2NL98 169 aa15.56■□□□□ 0.08
CLN3-217ENST00000565354 HACD2Q6Y1H2 254 aa15.56■□□□□ 0.08
CLN3-217ENST00000565354 ZNF550Q7Z398 422 aa15.56■□□□□ 0.08
CLN3-217ENST00000565354 ULK2Q8IYT8 1036 aa15.56■□□□□ 0.08
CLN3-217ENST00000565354 GTPBP8Q8N3Z3 284 aaPredicted RBP15.56■□□□□ 0.08
CLN3-217ENST00000565354 FAM71CQ8NEG0 241 aa15.56■□□□□ 0.08
CLN3-217ENST00000565354 FBXO27Q8NI29 283 aa15.56■□□□□ 0.08
CLN3-217ENST00000565354 WDYHV1Q96HA8 205 aa15.56■□□□□ 0.08
CLN3-217ENST00000565354 PRDM14Q9GZV8 571 aa15.56■□□□□ 0.08
CLN3-217ENST00000565354 DNAJB12Q9NXW2 375 aaKnown RBP15.56■□□□□ 0.08
CLN3-217ENST00000565354 ZNF337Q9Y3M9 751 aa15.56■□□□□ 0.08
CLN3-217ENST00000565354 AP4B1Q9Y6B7 739 aa15.56■□□□□ 0.08
CLN3-217ENST00000565354 C7orf72A4D263 438 aa15.55■□□□□ 0.08
CLN3-217ENST00000565354 FAM220BPB1ANY3 271 aa15.55■□□□□ 0.08
CLN3-217ENST00000565354 BCAS1O75363 584 aaPredicted RBP15.55■□□□□ 0.08
CLN3-217ENST00000565354 PRKCAP17252 672 aa15.55■□□□□ 0.08
CLN3-217ENST00000565354 IGFBP2P18065 325 aa15.55■□□□□ 0.08
CLN3-217ENST00000565354 LHX2P50458 406 aa15.55■□□□□ 0.08
CLN3-217ENST00000565354 SLC7A2P52569 658 aa15.55■□□□□ 0.08
CLN3-217ENST00000565354 EEFSECP57772 596 aaKnown RBP15.55■□□□□ 0.08
CLN3-217ENST00000565354 EEF1A1P68104 462 aaKnown RBP15.55■□□□□ 0.08
CLN3-217ENST00000565354 TOMM34Q15785 309 aaPredicted RBP15.55■□□□□ 0.08
CLN3-217ENST00000565354 EMC4Q5J8M3 183 aa15.55■□□□□ 0.08
CLN3-217ENST00000565354 RNF220Q5VTB9 566 aa15.55■□□□□ 0.08
CLN3-217ENST00000565354 B3GNT6Q6ZMB0 384 aa15.55■□□□□ 0.08
CLN3-217ENST00000565354 PATL1Q86TB9 770 aaKnown RBP15.55■□□□□ 0.08
CLN3-217ENST00000565354 ARMC8Q8IUR7 673 aa15.55■□□□□ 0.08
CLN3-217ENST00000565354 BHLHE22Q8NFJ8 381 aaPredicted RBP15.55■□□□□ 0.08
CLN3-217ENST00000565354 OR2T12Q8NG77 320 aa15.55■□□□□ 0.08
CLN3-217ENST00000565354 ST8SIA1Q92185 356 aa15.55■□□□□ 0.08
CLN3-217ENST00000565354 REXO5Q96IC2 774 aaKnown RBP15.55■□□□□ 0.08
CLN3-217ENST00000565354 MRGPRX4Q96LA9 322 aa15.55■□□□□ 0.08
CLN3-217ENST00000565354 KLHDC3Q9BQ90 382 aa15.55■□□□□ 0.08
CLN3-217ENST00000565354 ARL8BQ9NVJ2 186 aa15.55■□□□□ 0.08
CLN3-217ENST00000565354 KLHL28Q9NXS3 571 aa15.55■□□□□ 0.08
CLN3-217ENST00000565354 COQ3Q9NZJ6 369 aa15.55■□□□□ 0.08
CLN3-217ENST00000565354 FLNAP21333 2647 aaKnown RBP15.54■□□□□ 0.08
CLN3-217ENST00000565354 TNFSF12-TNFSF13A0A0A6YY99 330 aa15.54■□□□□ 0.08
CLN3-217ENST00000565354 FAM221AA4D161 298 aa15.54■□□□□ 0.08
CLN3-217ENST00000565354 CDHR4A6H8M9 788 aa15.54■□□□□ 0.08
CLN3-217ENST00000565354 CFAP73A6NFT4 308 aa15.54■□□□□ 0.08
CLN3-217ENST00000565354 CCT8L1PA6NM43 557 aa15.54■□□□□ 0.08
CLN3-217ENST00000565354 CPN1P15169 458 aa15.54■□□□□ 0.08
CLN3-217ENST00000565354 ZNF708P17019 499 aa15.54■□□□□ 0.08
CLN3-217ENST00000565354 ADH6P28332 368 aa15.54■□□□□ 0.08
CLN3-217ENST00000565354 PRKAR1BP31321 381 aa15.54■□□□□ 0.08
CLN3-217ENST00000565354 IDH2P48735 452 aaKnown RBP15.54■□□□□ 0.08
CLN3-217ENST00000565354 MNAT1P51948 309 aa15.54■□□□□ 0.08
CLN3-217ENST00000565354 RPS3AP61247 264 aaKnown RBP15.54■□□□□ 0.08
CLN3-217ENST00000565354 PSME3P61289 254 aa15.54■□□□□ 0.08
CLN3-217ENST00000565354 COPZ1P61923 177 aa15.54■□□□□ 0.08
CLN3-217ENST00000565354 MERTKQ12866 999 aa15.54■□□□□ 0.08
CLN3-217ENST00000565354 BCL2A1Q16548 175 aa15.54■□□□□ 0.08
CLN3-217ENST00000565354 FAM91A1Q658Y4 838 aa15.54■□□□□ 0.08
CLN3-217ENST00000565354 POMZP3Q6PJE2 187 aa15.54■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms