RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 EXT1Q16394 746 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 COQ5Q5HYK3 327 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 KLHL24Q6TFL4 600 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 CBLL1Q75N03 491 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 MRGPREQ86SM8 312 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 PTOV1Q86YD1 416 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 ERI1Q8IV48 349 aaKnown RBP5□□□□□ -1.61
VPS13C-209ENST00000560637 RIMKLAQ8IXN7 391 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 TSPAN14Q8NG11 270 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 MIPOL1Q8TD10 442 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 TM9SF4Q92544 642 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 BPIFA2Q96DR5 249 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 ZMYND19Q96E35 227 aaPredicted RBP5□□□□□ -1.61
VPS13C-209ENST00000560637 TRNT1Q96Q11 434 aaKnown RBP5□□□□□ -1.61
VPS13C-209ENST00000560637 BARD1Q99728 777 aaKnown RBP5□□□□□ -1.61
VPS13C-209ENST00000560637 SEMA4CQ9C0C4 833 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 AMBRA1Q9C0C7 1298 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 FLRT3Q9NZU0 649 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 MYOTQ9UBF9 498 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 ENOPH1Q9UHY7 261 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 EXO1Q9UQ84 846 aaKnown RBP5□□□□□ -1.61
VPS13C-209ENST00000560637 ESPL1Q14674 2120 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 LOC100130705A0A1B0GUX0 176 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 SUSD5O60279 629 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 OXSR1O95747 527 aaPredicted RBP5□□□□□ -1.61
VPS13C-209ENST00000560637 RENP00797 406 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 GNAO1P09471 354 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 PRR35P0CG20 571 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 PYCR1P32322 319 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 GNALP38405 381 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 PPICP45877 212 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 MAN2A2P49641 1150 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 CLRN1P58418 232 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 LSM11P83369 360 aaKnown RBP eCLIP5□□□□□ -1.61
VPS13C-209ENST00000560637 NHLH1Q02575 133 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 LGALS3BPQ08380 585 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 CBFBQ13951 182 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 VEZF1Q14119 521 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 GK3PQ14409 553 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 PRICKLE4Q2TBC4 344 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 GPR107Q5VW38 600 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 LEG1Q6P5S2 330 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 HACD2Q6Y1H2 254 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 MSANTD1Q6ZTZ1 278 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 PRSS42Q7Z5A4 293 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 GPR141Q7Z602 305 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 ADCK1Q86TW2 530 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 SLC30A8Q8IWU4 369 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 PHF21AQ96BD5 680 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 WDR34Q96EX3 536 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 LRR1Q96L50 414 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 ZNF597Q96LX8 424 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 TNFRSF13CQ96RJ3 184 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 SLC38A1Q9H2H9 487 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 FN3KQ9H479 309 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 RPRD1BQ9NQG5 326 aaKnown RBP5□□□□□ -1.61
VPS13C-209ENST00000560637 POU2F3Q9UKI9 436 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 BOKQ9UMX3 212 aaPredicted RBP5□□□□□ -1.61
VPS13C-209ENST00000560637 PCDHGA3Q9Y5H0 932 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 PTPRSQ13332 1948 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 CFAP54Q96N23 3096 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 TRGV8A0A0C4DH27 118 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 IGHV3-64DA0A0J9YX35 117 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 A0A1W2PRG6 482 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 MAGEA13PA6NCF6 341 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 J3QLW9 94 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 RCBTB2O95199 551 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 OR5F1O95221 314 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 PLATP00750 562 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 PABPC4LP0CB38 370 aaKnown RBP5□□□□□ -1.61
VPS13C-209ENST00000560637 DBTP11182 482 aaKnown RBP5□□□□□ -1.61
VPS13C-209ENST00000560637 ZNF19P17023 458 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 HOXA6P31267 233 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 EVI2BP34910 448 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 EFR3AQ14156 821 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 TOMM34Q15785 309 aaPredicted RBP5□□□□□ -1.61
VPS13C-209ENST00000560637 SMN1Q16637 294 aaKnown RBP5□□□□□ -1.61
VPS13C-209ENST00000560637 SAXO2Q658L1 398 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 KIRREL2Q6UWL6 708 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 ARSKQ6UWY0 536 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 PLEKHG7Q6ZR37 379 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 NDUFAF7Q7L592 441 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 FAM220AQ7Z4H9 259 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 PNPLA5Q7Z6Z6 429 aaPredicted RBP5□□□□□ -1.61
VPS13C-209ENST00000560637 SLITRK4Q8IW52 837 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 SLC7A13Q8TCU3 470 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 SFXN5Q8TD22 340 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 PTPMT1Q8WUK0 201 aaPredicted RBP5□□□□□ -1.61
VPS13C-209ENST00000560637 RBP7Q96R05 134 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 RASL10BQ96S79 203 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 COPS4Q9BT78 406 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 IL1RAPQ9NPH3 570 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 SIRT3Q9NTG7 399 aaPredicted RBP5□□□□□ -1.61
VPS13C-209ENST00000560637 SPIN1Q9Y657 262 aaPredicted RBP5□□□□□ -1.61
VPS13C-209ENST00000560637 HS3ST3B1Q9Y662 390 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 KIAA1671Q9BY89 1806 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 LAMA1P25391 3075 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 TMED7-TICAM2A0A0A6YYA0 188 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 DAPL1A0PJW8 107 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 SH3PXD2BA1X283 911 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms