RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 AP4B1Q9Y6B7 739 aa10.25□□□□□ -0.77
USP3-218ENST00000560202 NKX2-8O15522 239 aa10.25□□□□□ -0.77
USP3-218ENST00000560202 MITFO75030 526 aaPredicted RBP10.25□□□□□ -0.77
USP3-218ENST00000560202 GASTP01350 101 aa10.25□□□□□ -0.77
USP3-218ENST00000560202 WT1P19544 449 aaPredicted RBP10.25□□□□□ -0.77
USP3-218ENST00000560202 CBLP22681 906 aa10.25□□□□□ -0.77
USP3-218ENST00000560202 ITGA3P26006 1051 aa10.25□□□□□ -0.77
USP3-218ENST00000560202 PTGDSP41222 190 aa10.25□□□□□ -0.77
USP3-218ENST00000560202 CASP3P42574 277 aa10.25□□□□□ -0.77
USP3-218ENST00000560202 IDH2P48735 452 aaKnown RBP10.25□□□□□ -0.77
USP3-218ENST00000560202 P2RX1P51575 399 aa10.25□□□□□ -0.77
USP3-218ENST00000560202 RAD23AP54725 363 aa10.25□□□□□ -0.77
USP3-218ENST00000560202 RPP38P78345 283 aaKnown RBP10.25□□□□□ -0.77
USP3-218ENST00000560202 LSM11P83369 360 aaKnown RBP eCLIP10.25□□□□□ -0.77
USP3-218ENST00000560202 IL1RL1Q01638 556 aa10.25□□□□□ -0.77
USP3-218ENST00000560202 C17orf67Q0P5P2 114 aa10.25□□□□□ -0.77
USP3-218ENST00000560202 MERTKQ12866 999 aa10.25□□□□□ -0.77
USP3-218ENST00000560202 RFX4Q33E94 735 aa10.25□□□□□ -0.77
USP3-218ENST00000560202 BICRALQ6AI39 1079 aa10.25□□□□□ -0.77
USP3-218ENST00000560202 ULK3Q6PHR2 472 aa10.25□□□□□ -0.77
USP3-218ENST00000560202 GALNT5Q7Z7M9 940 aa10.25□□□□□ -0.77
USP3-218ENST00000560202 OR4K5Q8NGD3 323 aa10.25□□□□□ -0.77
USP3-218ENST00000560202 OR5W2Q8NH69 310 aa10.25□□□□□ -0.77
USP3-218ENST00000560202 ACOT11Q8WXI4 607 aaPredicted RBP10.25□□□□□ -0.77
USP3-218ENST00000560202 BORCS5Q969J3 196 aa10.25□□□□□ -0.77
USP3-218ENST00000560202 COX4I2Q96KJ9 171 aa10.25□□□□□ -0.77
USP3-218ENST00000560202 SECISBP2Q96T21 854 aaKnown RBP10.25□□□□□ -0.77
USP3-218ENST00000560202 ADI1Q9BV57 179 aa10.25□□□□□ -0.77
USP3-218ENST00000560202 LHPPQ9H008 270 aa10.25□□□□□ -0.77
USP3-218ENST00000560202 TOR3AQ9H497 397 aa10.25□□□□□ -0.77
USP3-218ENST00000560202 GALNT9Q9HCQ5 603 aa10.25□□□□□ -0.77
USP3-218ENST00000560202 KRT84Q9NSB2 600 aa10.25□□□□□ -0.77
USP3-218ENST00000560202 HPF1Q9NWY4 346 aa10.25□□□□□ -0.77
USP3-218ENST00000560202 ICAM5Q9UMF0 924 aa10.25□□□□□ -0.77
USP3-218ENST00000560202 MGAT4BQ9UQ53 548 aa10.25□□□□□ -0.77
USP3-218ENST00000560202 CHCHD2Q9Y6H1 151 aaPredicted RBP10.25□□□□□ -0.77
USP3-218ENST00000560202 C2orf72A6NCS6 295 aa10.24□□□□□ -0.77
USP3-218ENST00000560202 ARGFXA6NJG6 315 aa10.24□□□□□ -0.77
USP3-218ENST00000560202 CHP2O43745 196 aa10.24□□□□□ -0.77
USP3-218ENST00000560202 GMFGO60234 142 aa10.24□□□□□ -0.77
USP3-218ENST00000560202 NTN1O95631 604 aa10.24□□□□□ -0.77
USP3-218ENST00000560202 ADAP00813 363 aa10.24□□□□□ -0.77
USP3-218ENST00000560202 POU2F1P14859 743 aa10.24□□□□□ -0.77
USP3-218ENST00000560202 ITPKBP27987 946 aa10.24□□□□□ -0.77
USP3-218ENST00000560202 ESRRGP62508 458 aa10.24□□□□□ -0.77
USP3-218ENST00000560202 SNTA1Q13424 505 aa10.24□□□□□ -0.77
USP3-218ENST00000560202 ALG10BQ5I7T1 473 aa10.24□□□□□ -0.77
USP3-218ENST00000560202 ZNF468Q5VIY5 522 aaPredicted RBP10.24□□□□□ -0.77
USP3-218ENST00000560202 WBP2NLQ6ICG8 309 aa10.24□□□□□ -0.77
USP3-218ENST00000560202 PGBD2Q6P3X8 592 aa10.24□□□□□ -0.77
USP3-218ENST00000560202 TMEM81Q6P7N7 255 aa10.24□□□□□ -0.77
USP3-218ENST00000560202 ZNF730Q6ZMV8 503 aa10.24□□□□□ -0.77
USP3-218ENST00000560202 WDR88Q6ZMY6 472 aa10.24□□□□□ -0.77
USP3-218ENST00000560202 MBOAT2Q6ZWT7 520 aa10.24□□□□□ -0.77
USP3-218ENST00000560202 RRM2BQ7LG56 351 aa10.24□□□□□ -0.77
USP3-218ENST00000560202 ZER1Q7Z7L7 766 aa10.24□□□□□ -0.77
USP3-218ENST00000560202 DHRSXQ8N5I4 330 aa10.24□□□□□ -0.77
USP3-218ENST00000560202 ZNF563Q8TA94 476 aa10.24□□□□□ -0.77
USP3-218ENST00000560202 TMEM255BQ8WV15 326 aa10.24□□□□□ -0.77
USP3-218ENST00000560202 DNAJA4Q8WW22 397 aaPredicted RBP10.24□□□□□ -0.77
USP3-218ENST00000560202 TFAP2CQ92754 450 aa10.24□□□□□ -0.77
USP3-218ENST00000560202 FGF11Q92914 225 aa10.24□□□□□ -0.77
USP3-218ENST00000560202 GTPBP3Q969Y2 492 aaKnown RBP10.24□□□□□ -0.77
USP3-218ENST00000560202 NIPSNAP1Q9BPW8 284 aa10.24□□□□□ -0.77
USP3-218ENST00000560202 KLHDC3Q9BQ90 382 aa10.24□□□□□ -0.77
USP3-218ENST00000560202 GRIP2Q9C0E4 1043 aa10.24□□□□□ -0.77
USP3-218ENST00000560202 ZNF556Q9HAH1 456 aa10.24□□□□□ -0.77
USP3-218ENST00000560202 SDHAF3Q9NRP4 125 aa10.24□□□□□ -0.77
USP3-218ENST00000560202 STMN3Q9NZ72 180 aa10.24□□□□□ -0.77
USP3-218ENST00000560202 TEKT2Q9UIF3 430 aa10.24□□□□□ -0.77
USP3-218ENST00000560202 NUDT14O95848 222 aa10.23□□□□□ -0.77
USP3-218ENST00000560202 PRKAR1AP10644 381 aa10.23□□□□□ -0.77
USP3-218ENST00000560202 PGCP20142 388 aa10.23□□□□□ -0.77
USP3-218ENST00000560202 IFNGR2P38484 337 aa10.23□□□□□ -0.77
USP3-218ENST00000560202 HLCSP50747 726 aa10.23□□□□□ -0.77
USP3-218ENST00000560202 UGT2B15P54855 530 aa10.23□□□□□ -0.77
USP3-218ENST00000560202 RRADP55042 308 aa10.23□□□□□ -0.77
USP3-218ENST00000560202 ADARB1P78563 741 aaKnown RBP10.23□□□□□ -0.77
USP3-218ENST00000560202 MYBPC1Q00872 1141 aa10.23□□□□□ -0.77
USP3-218ENST00000560202 CBFBQ13951 182 aa10.23□□□□□ -0.77
USP3-218ENST00000560202 COL28A1Q2UY09 1125 aa10.23□□□□□ -0.77
USP3-218ENST00000560202 SLC36A3Q495N2 470 aa10.23□□□□□ -0.77
USP3-218ENST00000560202 ABHD17BQ5VST6 288 aa10.23□□□□□ -0.77
USP3-218ENST00000560202 SLC22A10Q63ZE4 541 aa10.23□□□□□ -0.77
USP3-218ENST00000560202 OR5M10Q6IEU7 315 aa10.23□□□□□ -0.77
USP3-218ENST00000560202 SLC30A6Q6NXT4 461 aa10.23□□□□□ -0.77
USP3-218ENST00000560202 C1orf94Q6P1W5 598 aa10.23□□□□□ -0.77
USP3-218ENST00000560202 PRICKLE2Q7Z3G6 844 aa10.23□□□□□ -0.77
USP3-218ENST00000560202 RNF113BQ8IZP6 322 aaKnown RBP10.23□□□□□ -0.77
USP3-218ENST00000560202 BEST3Q8N1M1 668 aa10.23□□□□□ -0.77
USP3-218ENST00000560202 TSPAN14Q8NG11 270 aa10.23□□□□□ -0.77
USP3-218ENST00000560202 ZNF420Q8TAQ5 688 aaPredicted RBP10.23□□□□□ -0.77
USP3-218ENST00000560202 PAQR8Q8TEZ7 354 aa10.23□□□□□ -0.77
USP3-218ENST00000560202 C17orf50Q8WW18 174 aa10.23□□□□□ -0.77
USP3-218ENST00000560202 TMEM239Q8WW34 195 aa10.23□□□□□ -0.77
USP3-218ENST00000560202 CYGBQ8WWM9 190 aa10.23□□□□□ -0.77
USP3-218ENST00000560202 SGCZQ96LD1 299 aa10.23□□□□□ -0.77
USP3-218ENST00000560202 MBOAT4Q96T53 435 aa10.23□□□□□ -0.77
USP3-218ENST00000560202 DGCR6LQ9BY27 220 aa10.23□□□□□ -0.77
USP3-218ENST00000560202 CPNE5Q9HCH3 593 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms