RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 PRPS1L1P21108 318 aa8.11□□□□□ -1.11
HDDC3-204ENST00000559834 IGHV1-2P23083 117 aa8.11□□□□□ -1.11
HDDC3-204ENST00000559834 PTAFRP25105 342 aa8.11□□□□□ -1.11
HDDC3-204ENST00000559834 FKBP2P26885 142 aaKnown RBP8.11□□□□□ -1.11
HDDC3-204ENST00000559834 CCR4P51679 360 aa8.11□□□□□ -1.11
HDDC3-204ENST00000559834 NUDT6P53370 316 aa8.11□□□□□ -1.11
HDDC3-204ENST00000559834 CDH11P55287 796 aa8.11□□□□□ -1.11
HDDC3-204ENST00000559834 C21orf58P58505 322 aa8.11□□□□□ -1.11
HDDC3-204ENST00000559834 PDK3Q15120 406 aa8.11□□□□□ -1.11
HDDC3-204ENST00000559834 FAM153CQ494X1 144 aa8.11□□□□□ -1.11
HDDC3-204ENST00000559834 TIGD2Q4W5G0 525 aa8.11□□□□□ -1.11
HDDC3-204ENST00000559834 FBXW9Q5XUX1 488 aa8.11□□□□□ -1.11
HDDC3-204ENST00000559834 C3orf33Q6P1S2 294 aa8.11□□□□□ -1.11
HDDC3-204ENST00000559834 CLEC2AQ6UVW9 174 aa8.11□□□□□ -1.11
HDDC3-204ENST00000559834 TMPPEQ6ZT21 453 aa8.11□□□□□ -1.11
HDDC3-204ENST00000559834 MTDHQ86UE4 582 aaKnown RBP8.11□□□□□ -1.11
HDDC3-204ENST00000559834 FBXL14Q8N1E6 418 aa8.11□□□□□ -1.11
HDDC3-204ENST00000559834 UBE2J2Q8N2K1 259 aa8.11□□□□□ -1.11
HDDC3-204ENST00000559834 SFXN5Q8TD22 340 aa8.11□□□□□ -1.11
HDDC3-204ENST00000559834 SLC25A43Q8WUT9 341 aaPredicted RBP8.11□□□□□ -1.11
HDDC3-204ENST00000559834 TWIST2Q8WVJ9 160 aa8.11□□□□□ -1.11
HDDC3-204ENST00000559834 ST8SIA1Q92185 356 aa8.11□□□□□ -1.11
HDDC3-204ENST00000559834 ZNF775Q96BV0 537 aaPredicted RBP8.11□□□□□ -1.11
HDDC3-204ENST00000559834 COQ8BQ96D53 544 aa8.11□□□□□ -1.11
HDDC3-204ENST00000559834 ZHX1-C8orf76Q96EF9 292 aa8.11□□□□□ -1.11
HDDC3-204ENST00000559834 THUMPD3Q9BV44 507 aaKnown RBP8.11□□□□□ -1.11
HDDC3-204ENST00000559834 NMUR2Q9GZQ4 415 aa8.11□□□□□ -1.11
HDDC3-204ENST00000559834 LAT2Q9GZY6 243 aa8.11□□□□□ -1.11
HDDC3-204ENST00000559834 ANKZF1Q9H8Y5 726 aa8.11□□□□□ -1.11
HDDC3-204ENST00000559834 CBLN4Q9NTU7 201 aa8.11□□□□□ -1.11
HDDC3-204ENST00000559834 GPATCH2Q9NW75 528 aa8.11□□□□□ -1.11
HDDC3-204ENST00000559834 PRSS50Q9UI38 385 aa8.11□□□□□ -1.11
HDDC3-204ENST00000559834 GDF2Q9UK05 429 aaPredicted RBP8.11□□□□□ -1.11
HDDC3-204ENST00000559834 ING1Q9UK53 422 aaPredicted RBP8.11□□□□□ -1.11
HDDC3-204ENST00000559834 CDC42EP3Q9UKI2 254 aa8.11□□□□□ -1.11
HDDC3-204ENST00000559834 POU2F3Q9UKI9 436 aa8.11□□□□□ -1.11
HDDC3-204ENST00000559834 KCNE3Q9Y6H6 103 aa8.11□□□□□ -1.11
HDDC3-204ENST00000559834 CADP27708 2225 aa8.11□□□□□ -1.11
HDDC3-204ENST00000559834 FREM1Q5H8C1 2179 aa8.11□□□□□ -1.11
HDDC3-204ENST00000559834 ALPK2Q86TB3 2170 aa8.11□□□□□ -1.11
HDDC3-204ENST00000559834 SONP18583 2426 aaKnown RBP8.1□□□□□ -1.11
HDDC3-204ENST00000559834 FAM234BA2RU67 622 aa8.1□□□□□ -1.11
HDDC3-204ENST00000559834 CCT8L1PA6NM43 557 aa8.1□□□□□ -1.11
HDDC3-204ENST00000559834 ESPNB1AK53 854 aa8.1□□□□□ -1.11
HDDC3-204ENST00000559834 ETV2O00321 342 aaPredicted RBP8.1□□□□□ -1.11
HDDC3-204ENST00000559834 GPR171O14626 319 aa8.1□□□□□ -1.11
HDDC3-204ENST00000559834 ANKRD28O15084 1053 aa8.1□□□□□ -1.11
HDDC3-204ENST00000559834 SMAD9O15198 467 aaKnown RBP8.1□□□□□ -1.11
HDDC3-204ENST00000559834 NPHS1O60500 1241 aa8.1□□□□□ -1.11
HDDC3-204ENST00000559834 PEX11AO75192 247 aa8.1□□□□□ -1.11
HDDC3-204ENST00000559834 NDUFS7O75251 213 aa8.1□□□□□ -1.11
HDDC3-204ENST00000559834 STX11O75558 287 aa8.1□□□□□ -1.11
HDDC3-204ENST00000559834 C6orf47O95873 294 aa8.1□□□□□ -1.11
HDDC3-204ENST00000559834 CSTAP01040 98 aa8.1□□□□□ -1.11
HDDC3-204ENST00000559834 DHRS4L1P0CG22 281 aa8.1□□□□□ -1.11
HDDC3-204ENST00000559834 FAM157CP0CG43 387 aa8.1□□□□□ -1.11
HDDC3-204ENST00000559834 TFPIP10646 304 aa8.1□□□□□ -1.11
HDDC3-204ENST00000559834 PGCP20142 388 aa8.1□□□□□ -1.11
HDDC3-204ENST00000559834 MATN1P21941 496 aa8.1□□□□□ -1.11
HDDC3-204ENST00000559834 TTKP33981 857 aa8.1□□□□□ -1.11
HDDC3-204ENST00000559834 APOBEC1P41238 236 aaKnown RBP8.1□□□□□ -1.11
HDDC3-204ENST00000559834 DIO1P49895 249 aa8.1□□□□□ -1.11
HDDC3-204ENST00000559834 SESN3P58005 492 aa8.1□□□□□ -1.11
HDDC3-204ENST00000559834 MERTKQ12866 999 aa8.1□□□□□ -1.11
HDDC3-204ENST00000559834 GPR68Q15743 365 aa8.1□□□□□ -1.11
HDDC3-204ENST00000559834 ZNF141Q15928 474 aa8.1□□□□□ -1.11
HDDC3-204ENST00000559834 NDUFAF6Q330K2 333 aa8.1□□□□□ -1.11
HDDC3-204ENST00000559834 UGT3A2Q3SY77 523 aa8.1□□□□□ -1.11
HDDC3-204ENST00000559834 ATP6AP1LQ52LC2 224 aa8.1□□□□□ -1.11
HDDC3-204ENST00000559834 DDX59Q5T1V6 619 aaKnown RBP eCLIP8.1□□□□□ -1.11
HDDC3-204ENST00000559834 OR7E24Q6IFN5 339 aa8.1□□□□□ -1.11
HDDC3-204ENST00000559834 SLC22A25Q6T423 547 aa8.1□□□□□ -1.11
HDDC3-204ENST00000559834 SEZ6L2Q6UXD5 910 aa8.1□□□□□ -1.11
HDDC3-204ENST00000559834 EIF3MQ7L2H7 374 aaKnown RBP8.1□□□□□ -1.11
HDDC3-204ENST00000559834 ATG4DQ86TL0 474 aaPredicted RBP8.1□□□□□ -1.11
HDDC3-204ENST00000559834 PIAS4Q8N2W9 510 aaPredicted RBP8.1□□□□□ -1.11
HDDC3-204ENST00000559834 ZNF433Q8N7K0 673 aaPredicted RBP8.1□□□□□ -1.11
HDDC3-204ENST00000559834 OR10H5Q8NGA6 315 aa8.1□□□□□ -1.11
HDDC3-204ENST00000559834 KIF18AQ8NI77 898 aa8.1□□□□□ -1.11
HDDC3-204ENST00000559834 UBLCP1Q8WVY7 318 aaPredicted RBP8.1□□□□□ -1.11
HDDC3-204ENST00000559834 ZNF75CPQ92670 426 aaPredicted RBP8.1□□□□□ -1.11
HDDC3-204ENST00000559834 OR7D2Q96RA2 312 aa8.1□□□□□ -1.11
HDDC3-204ENST00000559834 ZNF300Q96RE9 604 aaPredicted RBP8.1□□□□□ -1.11
HDDC3-204ENST00000559834 TNFRSF13CQ96RJ3 184 aa8.1□□□□□ -1.11
HDDC3-204ENST00000559834 KCNK17Q96T54 332 aa8.1□□□□□ -1.11
HDDC3-204ENST00000559834 SDF2Q99470 211 aa8.1□□□□□ -1.11
HDDC3-204ENST00000559834 DHRS9Q9BPW9 319 aa8.1□□□□□ -1.11
HDDC3-204ENST00000559834 RHOXF2Q9BQY4 288 aa8.1□□□□□ -1.11
HDDC3-204ENST00000559834 BHLHE41Q9C0J9 482 aaPredicted RBP8.1□□□□□ -1.11
HDDC3-204ENST00000559834 C12orf65Q9H3J6 166 aaKnown RBP8.1□□□□□ -1.11
HDDC3-204ENST00000559834 ACER3Q9NUN7 267 aa8.1□□□□□ -1.11
HDDC3-204ENST00000559834 EXD2Q9NVH0 621 aa8.1□□□□□ -1.11
HDDC3-204ENST00000559834 PCDHGB4Q9UN71 923 aa8.1□□□□□ -1.11
HDDC3-204ENST00000559834 NOSIPQ9Y314 301 aaKnown RBP8.1□□□□□ -1.11
HDDC3-204ENST00000559834 SPIN1Q9Y657 262 aaPredicted RBP8.1□□□□□ -1.11
HDDC3-204ENST00000559834 COL6A5A8TX70 2615 aa8.09□□□□□ -1.11
HDDC3-204ENST00000559834 IGKV3D-15A0A087WSY6 115 aa8.09□□□□□ -1.11
HDDC3-204ENST00000559834 GOLGA8QA0A0J9YX86 632 aa8.09□□□□□ -1.11
HDDC3-204ENST00000559834 GOLGA8OA6NCC3 632 aa8.09□□□□□ -1.11
HDDC3-204ENST00000559834 SMIM23A6NLE4 172 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms