RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 ARPC5LQ9BPX5 153 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 MED17Q9NVC6 651 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 COPS7AQ9UBW8 275 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 RARRES3Q9UL19 164 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 RPL36Q9Y3U8 105 aaKnown RBP11.68□□□□□ -0.54
SHMT2-229ENST00000557348 FRG2CA6NGY1 282 aa11.67□□□□□ -0.54
SHMT2-229ENST00000557348 A8MU76 341 aa11.67□□□□□ -0.54
SHMT2-229ENST00000557348 NPIPB9F8W1W9 429 aa11.67□□□□□ -0.54
SHMT2-229ENST00000557348 M0R082 166 aa11.67□□□□□ -0.54
SHMT2-229ENST00000557348 ARHGAP33O14559 1287 aa11.67□□□□□ -0.54
SHMT2-229ENST00000557348 FRS3O43559 492 aa11.67□□□□□ -0.54
SHMT2-229ENST00000557348 CT45A8P0DMV1 189 aa11.67□□□□□ -0.54
SHMT2-229ENST00000557348 CT45A9P0DMV2 189 aa11.67□□□□□ -0.54
SHMT2-229ENST00000557348 CKMT1AP12532 417 aa11.67□□□□□ -0.54
SHMT2-229ENST00000557348 LIPAP38571 399 aa11.67□□□□□ -0.54
SHMT2-229ENST00000557348 OMPP47874 163 aa11.67□□□□□ -0.54
SHMT2-229ENST00000557348 GIPRP48546 466 aa11.67□□□□□ -0.54
SHMT2-229ENST00000557348 RGS6P49758 472 aa11.67□□□□□ -0.54
SHMT2-229ENST00000557348 ERV3-1Q14264 604 aa11.67□□□□□ -0.54
SHMT2-229ENST00000557348 OR1Q1Q15612 314 aa11.67□□□□□ -0.54
SHMT2-229ENST00000557348 MAPK14Q16539 360 aa11.67□□□□□ -0.54
SHMT2-229ENST00000557348 MINDY4Q4G0A6 757 aa11.67□□□□□ -0.54
SHMT2-229ENST00000557348 CT45A2Q5DJT8 189 aa11.67□□□□□ -0.54
SHMT2-229ENST00000557348 HMGN2P46Q86SG4 172 aa11.67□□□□□ -0.54
SHMT2-229ENST00000557348 MRGPREQ86SM8 312 aa11.67□□□□□ -0.54
SHMT2-229ENST00000557348 SNX29P2Q8IUI4 249 aa11.67□□□□□ -0.54
SHMT2-229ENST00000557348 RDH10Q8IZV5 341 aa11.67□□□□□ -0.54
SHMT2-229ENST00000557348 LSMEM1Q8N8F7 131 aa11.67□□□□□ -0.54
SHMT2-229ENST00000557348 PLPP5Q8NEB5 264 aa11.67□□□□□ -0.54
SHMT2-229ENST00000557348 ANKK1Q8NFD2 765 aa11.67□□□□□ -0.54
SHMT2-229ENST00000557348 SLC7A6Q92536 515 aa11.67□□□□□ -0.54
SHMT2-229ENST00000557348 ZBTB20Q9HC78 741 aaPredicted RBP11.67□□□□□ -0.54
SHMT2-229ENST00000557348 C11orf16Q9NQ32 467 aa11.67□□□□□ -0.54
SHMT2-229ENST00000557348 PTTG3PQ9NZH4 202 aa11.67□□□□□ -0.54
SHMT2-229ENST00000557348 DHCR7Q9UBM7 475 aaKnown RBP11.67□□□□□ -0.54
SHMT2-229ENST00000557348 NUP50Q9UKX7 468 aa11.67□□□□□ -0.54
SHMT2-229ENST00000557348 SLC7A7Q9UM01 511 aa11.67□□□□□ -0.54
SHMT2-229ENST00000557348 TNRC6BQ9UPQ9 1833 aaKnown RBP11.66□□□□□ -0.54
SHMT2-229ENST00000557348 IGLV3-12A0A075B6K2 115 aa11.66□□□□□ -0.54
SHMT2-229ENST00000557348 LY6G6EA0A0G2JKS1 128 aa11.66□□□□□ -0.54
SHMT2-229ENST00000557348 IQCMA0A1B0GVH7 501 aa11.66□□□□□ -0.54
SHMT2-229ENST00000557348 PEX12O00623 359 aa11.66□□□□□ -0.54
SHMT2-229ENST00000557348 CHP2O43745 196 aa11.66□□□□□ -0.54
SHMT2-229ENST00000557348 ZNF883P0CG24 379 aa11.66□□□□□ -0.54
SHMT2-229ENST00000557348 GADD45AP24522 165 aa11.66□□□□□ -0.54
SHMT2-229ENST00000557348 ADH7P40394 386 aa11.66□□□□□ -0.54
SHMT2-229ENST00000557348 OR1D4P47884 311 aa11.66□□□□□ -0.54
SHMT2-229ENST00000557348 SLC37A1P57057 533 aa11.66□□□□□ -0.54
SHMT2-229ENST00000557348 DAB2P98082 770 aa11.66□□□□□ -0.54
SHMT2-229ENST00000557348 CDK5Q00535 292 aa11.66□□□□□ -0.54
SHMT2-229ENST00000557348 RHAGQ02094 409 aa11.66□□□□□ -0.54
SHMT2-229ENST00000557348 SRSF5Q13243 272 aaKnown RBP11.66□□□□□ -0.54
SHMT2-229ENST00000557348 CCDC58Q4VC31 144 aa11.66□□□□□ -0.54
SHMT2-229ENST00000557348 SMUG1Q53HV7 270 aa11.66□□□□□ -0.54
SHMT2-229ENST00000557348 PDZK1Q5T2W1 519 aa11.66□□□□□ -0.54
SHMT2-229ENST00000557348 HLA-DQA1Q5Y7H0 255 aa11.66□□□□□ -0.54
SHMT2-229ENST00000557348 NPSR1Q6W5P4 371 aa11.66□□□□□ -0.54
SHMT2-229ENST00000557348 Q6ZPB1 254 aaPredicted RBP11.66□□□□□ -0.54
SHMT2-229ENST00000557348 FAM109AQ8N4B1 249 aa11.66□□□□□ -0.54
SHMT2-229ENST00000557348 RCBTB1Q8NDN9 531 aa11.66□□□□□ -0.54
SHMT2-229ENST00000557348 C17orf47Q8NEP4 570 aa11.66□□□□□ -0.54
SHMT2-229ENST00000557348 PTPMT1Q8WUK0 201 aaPredicted RBP11.66□□□□□ -0.54
SHMT2-229ENST00000557348 ZC3HAV1LQ96H79 300 aaKnown RBP11.66□□□□□ -0.54
SHMT2-229ENST00000557348 SENP5Q96HI0 755 aaPredicted RBP11.66□□□□□ -0.54
SHMT2-229ENST00000557348 RNF170Q96K19 258 aa11.66□□□□□ -0.54
SHMT2-229ENST00000557348 CTPS2Q9NRF8 586 aa11.66□□□□□ -0.54
SHMT2-229ENST00000557348 UBQLN4Q9NRR5 601 aa11.66□□□□□ -0.54
SHMT2-229ENST00000557348 PNO1Q9NRX1 252 aaKnown RBP11.66□□□□□ -0.54
SHMT2-229ENST00000557348 B3GNT2Q9NY97 397 aa11.66□□□□□ -0.54
SHMT2-229ENST00000557348 IL20Q9NYY1 176 aa11.66□□□□□ -0.54
SHMT2-229ENST00000557348 KCNN3Q9UGI6 736 aa11.66□□□□□ -0.54
SHMT2-229ENST00000557348 KCNE5Q9UJ90 142 aa11.66□□□□□ -0.54
SHMT2-229ENST00000557348 U3KQA8 63 aa11.66□□□□□ -0.54
SHMT2-229ENST00000557348 GON4LQ3T8J9 2241 aa11.66□□□□□ -0.54
SHMT2-229ENST00000557348 CACNA1EQ15878 2313 aa11.65□□□□□ -0.54
SHMT2-229ENST00000557348 KNL1Q8NG31 2342 aa11.65□□□□□ -0.54
SHMT2-229ENST00000557348 MEIOCA2RUB1 952 aa11.65□□□□□ -0.54
SHMT2-229ENST00000557348 M0R296 226 aa11.65□□□□□ -0.54
SHMT2-229ENST00000557348 CCRL2O00421 344 aa11.65□□□□□ -0.54
SHMT2-229ENST00000557348 KLF4O43474 513 aa11.65□□□□□ -0.54
SHMT2-229ENST00000557348 SNAPC5O75971 98 aa11.65□□□□□ -0.54
SHMT2-229ENST00000557348 SOX14O95416 240 aa11.65□□□□□ -0.54
SHMT2-229ENST00000557348 IL33O95760 270 aa11.65□□□□□ -0.54
SHMT2-229ENST00000557348 ONECUT2O95948 504 aa11.65□□□□□ -0.54
SHMT2-229ENST00000557348 IGKV3-11P04433 115 aa11.65□□□□□ -0.54
SHMT2-229ENST00000557348 TP53P04637 393 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-229ENST00000557348 HMGN1P05114 100 aa11.65□□□□□ -0.54
SHMT2-229ENST00000557348 DBTP11182 482 aaKnown RBP11.65□□□□□ -0.54
SHMT2-229ENST00000557348 CCL7P80098 99 aa11.65□□□□□ -0.54
SHMT2-229ENST00000557348 GALK2Q01415 458 aa11.65□□□□□ -0.54
SHMT2-229ENST00000557348 GINS1Q14691 196 aa11.65□□□□□ -0.54
SHMT2-229ENST00000557348 NSDHLQ15738 373 aa11.65□□□□□ -0.54
SHMT2-229ENST00000557348 SMN1Q16637 294 aaKnown RBP11.65□□□□□ -0.54
SHMT2-229ENST00000557348 BCORP1Q8N888 145 aa11.65□□□□□ -0.54
SHMT2-229ENST00000557348 FAM83FQ8NEG4 500 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-229ENST00000557348 SLC2A12Q8TD20 617 aa11.65□□□□□ -0.54
SHMT2-229ENST00000557348 TMEM239Q8WW34 195 aa11.65□□□□□ -0.54
SHMT2-229ENST00000557348 GGHQ92820 318 aa11.65□□□□□ -0.54
SHMT2-229ENST00000557348 LOXL4Q96JB6 756 aa11.65□□□□□ -0.54
SHMT2-229ENST00000557348 LCORQ96JN0 433 aaPredicted RBP11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms