RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 VIMP08670 466 aaKnown RBP12.3□□□□□ -0.44
SHMT2-219ENST00000555563 IL7RP16871 459 aa12.3□□□□□ -0.44
SHMT2-219ENST00000555563 PGCP20142 388 aa12.3□□□□□ -0.44
SHMT2-219ENST00000555563 SSTR2P30874 369 aa12.3□□□□□ -0.44
SHMT2-219ENST00000555563 RYKP34925 604 aa12.3□□□□□ -0.44
SHMT2-219ENST00000555563 METTL21CQ5VZV1 264 aa12.3□□□□□ -0.44
SHMT2-219ENST00000555563 C3orf33Q6P1S2 294 aa12.3□□□□□ -0.44
SHMT2-219ENST00000555563 PLEKHM3Q6ZWE6 761 aa12.3□□□□□ -0.44
SHMT2-219ENST00000555563 LUZP2Q86TE4 346 aa12.3□□□□□ -0.44
SHMT2-219ENST00000555563 RETREG3Q86VR2 466 aa12.3□□□□□ -0.44
SHMT2-219ENST00000555563 VRK2Q86Y07 508 aa12.3□□□□□ -0.44
SHMT2-219ENST00000555563 CNEP1R1Q8N9A8 125 aa12.3□□□□□ -0.44
SHMT2-219ENST00000555563 OR52P1PQ8NH57 321 aa12.3□□□□□ -0.44
SHMT2-219ENST00000555563 ZNF563Q8TA94 476 aa12.3□□□□□ -0.44
SHMT2-219ENST00000555563 TMEM234Q8WY98 164 aa12.3□□□□□ -0.44
SHMT2-219ENST00000555563 PMM1Q92871 262 aa12.3□□□□□ -0.44
SHMT2-219ENST00000555563 LRRC46Q96FV0 321 aa12.3□□□□□ -0.44
SHMT2-219ENST00000555563 SRXN1Q9BYN0 137 aa12.3□□□□□ -0.44
SHMT2-219ENST00000555563 PIGMQ9H3S5 423 aa12.3□□□□□ -0.44
SHMT2-219ENST00000555563 IKZF5Q9H5V7 419 aa12.3□□□□□ -0.44
SHMT2-219ENST00000555563 COQ10BQ9H8M1 238 aa12.3□□□□□ -0.44
SHMT2-219ENST00000555563 A4GALTQ9NPC4 353 aa12.3□□□□□ -0.44
SHMT2-219ENST00000555563 ACER3Q9NUN7 267 aa12.3□□□□□ -0.44
SHMT2-219ENST00000555563 PAQR5Q9NXK6 330 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-219ENST00000555563 LEF1Q9UJU2 399 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-219ENST00000555563 FOXD3Q9UJU5 478 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-219ENST00000555563 MCTS1Q9ULC4 181 aaKnown RBP12.3□□□□□ -0.44
SHMT2-219ENST00000555563 TMEM247A6NEH6 219 aa12.29□□□□□ -0.44
SHMT2-219ENST00000555563 AP3D1O14617 1153 aa12.29□□□□□ -0.44
SHMT2-219ENST00000555563 ATP8B1O43520 1251 aa12.29□□□□□ -0.44
SHMT2-219ENST00000555563 SMNDC1O75940 238 aaKnown RBP eCLIP12.29□□□□□ -0.44
SHMT2-219ENST00000555563 SYNGR4O95473 234 aa12.29□□□□□ -0.44
SHMT2-219ENST00000555563 PPIBP23284 216 aaKnown RBP12.29□□□□□ -0.44
SHMT2-219ENST00000555563 KIR2DL2P43627 348 aaPredicted RBP12.29□□□□□ -0.44
SHMT2-219ENST00000555563 CPA2P48052 419 aa12.29□□□□□ -0.44
SHMT2-219ENST00000555563 EEF1A1P68104 462 aaKnown RBP12.29□□□□□ -0.44
SHMT2-219ENST00000555563 MERTKQ12866 999 aa12.29□□□□□ -0.44
SHMT2-219ENST00000555563 GNA13Q14344 377 aa12.29□□□□□ -0.44
SHMT2-219ENST00000555563 GUSBP1Q15486 140 aa12.29□□□□□ -0.44
SHMT2-219ENST00000555563 ZNF239Q16600 458 aaKnown RBP12.29□□□□□ -0.44
SHMT2-219ENST00000555563 TMEM176BQ3YBM2 270 aaPredicted RBP12.29□□□□□ -0.44
SHMT2-219ENST00000555563 LIN52Q52LA3 116 aa12.29□□□□□ -0.44
SHMT2-219ENST00000555563 PDSS1Q5T2R2 415 aa12.29□□□□□ -0.44
SHMT2-219ENST00000555563 EEF1A1P5Q5VTE0 462 aa12.29□□□□□ -0.44
SHMT2-219ENST00000555563 DLEU7Q6UYE1 221 aa12.29□□□□□ -0.44
SHMT2-219ENST00000555563 ZNF836Q6ZNA1 936 aa12.29□□□□□ -0.44
SHMT2-219ENST00000555563 BTLAQ7Z6A9 289 aa12.29□□□□□ -0.44
SHMT2-219ENST00000555563 DHDDSQ86SQ9 333 aa12.29□□□□□ -0.44
SHMT2-219ENST00000555563 OSTF1Q92882 214 aa12.29□□□□□ -0.44
SHMT2-219ENST00000555563 STARD4Q96DR4 205 aa12.29□□□□□ -0.44
SHMT2-219ENST00000555563 CPPED1Q9BRF8 314 aaPredicted RBP12.29□□□□□ -0.44
SHMT2-219ENST00000555563 RBM24Q9BX46 236 aaKnown RBP12.29□□□□□ -0.44
SHMT2-219ENST00000555563 PRRG4Q9BZD6 226 aa12.29□□□□□ -0.44
SHMT2-219ENST00000555563 RLIMQ9NVW2 624 aa12.29□□□□□ -0.44
SHMT2-219ENST00000555563 GALNT8Q9NY28 637 aa12.29□□□□□ -0.44
SHMT2-219ENST00000555563 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.29□□□□□ -0.44
SHMT2-219ENST00000555563 KCNN3Q9UGI6 736 aa12.29□□□□□ -0.44
SHMT2-219ENST00000555563 ZNF443Q9Y2A4 671 aaPredicted RBP12.29□□□□□ -0.44
SHMT2-219ENST00000555563 GMEB1Q9Y692 573 aa12.29□□□□□ -0.44
SHMT2-219ENST00000555563 A0A1W2PNR3 127 aa12.28□□□□□ -0.44
SHMT2-219ENST00000555563 ANGPT2O15123 496 aa12.28□□□□□ -0.44
SHMT2-219ENST00000555563 THBS1P07996 1170 aa12.28□□□□□ -0.44
SHMT2-219ENST00000555563 SLC7A1P30825 629 aa12.28□□□□□ -0.44
SHMT2-219ENST00000555563 CPOXP36551 454 aa12.28□□□□□ -0.44
SHMT2-219ENST00000555563 MDH1P40925 334 aaKnown RBP12.28□□□□□ -0.44
SHMT2-219ENST00000555563 ARFIP2P53365 341 aa12.28□□□□□ -0.44
SHMT2-219ENST00000555563 CARD18P57730 90 aa12.28□□□□□ -0.44
SHMT2-219ENST00000555563 TLE4Q04727 773 aa12.28□□□□□ -0.44
SHMT2-219ENST00000555563 MYBPHQ13203 477 aa12.28□□□□□ -0.44
SHMT2-219ENST00000555563 GCNT6Q5T4J0 391 aa12.28□□□□□ -0.44
SHMT2-219ENST00000555563 RNF220Q5VTB9 566 aa12.28□□□□□ -0.44
SHMT2-219ENST00000555563 PRAMEF8Q5VWM4 474 aa12.28□□□□□ -0.44
SHMT2-219ENST00000555563 PRAMEF7Q5VXH5 474 aa12.28□□□□□ -0.44
SHMT2-219ENST00000555563 GRINAQ7Z429 371 aa12.28□□□□□ -0.44
SHMT2-219ENST00000555563 LSRQ86X29 649 aaPredicted RBP12.28□□□□□ -0.44
SHMT2-219ENST00000555563 DPP10Q8N608 796 aa12.28□□□□□ -0.44
SHMT2-219ENST00000555563 RNF128Q8TEB7 428 aa12.28□□□□□ -0.44
SHMT2-219ENST00000555563 CPNE4Q96A23 557 aaPredicted RBP12.28□□□□□ -0.44
SHMT2-219ENST00000555563 CCDC106Q9BWC9 280 aa12.28□□□□□ -0.44
SHMT2-219ENST00000555563 SLC24A3Q9HC58 644 aa12.28□□□□□ -0.44
SHMT2-219ENST00000555563 BCL2L10Q9HD36 194 aa12.28□□□□□ -0.44
SHMT2-219ENST00000555563 CTPS2Q9NRF8 586 aa12.28□□□□□ -0.44
SHMT2-219ENST00000555563 CRIM1Q9NZV1 1036 aa12.28□□□□□ -0.44
SHMT2-219ENST00000555563 CLEC4AQ9UMR7 237 aa12.28□□□□□ -0.44
SHMT2-219ENST00000555563 NDUFAF1Q9Y375 327 aa12.28□□□□□ -0.44
SHMT2-219ENST00000555563 A0A0G2JPF8 293 aa12.27□□□□□ -0.45
SHMT2-219ENST00000555563 CDHR4A6H8M9 788 aa12.27□□□□□ -0.45
SHMT2-219ENST00000555563 CFAP73A6NFT4 308 aa12.27□□□□□ -0.45
SHMT2-219ENST00000555563 A8MXE2 369 aa12.27□□□□□ -0.45
SHMT2-219ENST00000555563 HNRNPCL2B2RXH8 293 aa12.27□□□□□ -0.45
SHMT2-219ENST00000555563 HNRNPCL3B7ZW38 293 aa12.27□□□□□ -0.45
SHMT2-219ENST00000555563 MSTNO14793 375 aa12.27□□□□□ -0.45
SHMT2-219ENST00000555563 HNRNPCL1O60812 293 aaKnown RBP12.27□□□□□ -0.45
SHMT2-219ENST00000555563 SS18L1O75177 396 aaPredicted RBP12.27□□□□□ -0.45
SHMT2-219ENST00000555563 PLGP00747 810 aaPredicted RBP12.27□□□□□ -0.45
SHMT2-219ENST00000555563 HNRNPCL4P0DMR1 293 aa12.27□□□□□ -0.45
SHMT2-219ENST00000555563 ARAFP10398 606 aa12.27□□□□□ -0.45
SHMT2-219ENST00000555563 GPX2P18283 190 aa12.27□□□□□ -0.45
SHMT2-219ENST00000555563 PEX19P40855 299 aa12.27□□□□□ -0.45
SHMT2-219ENST00000555563 KIR2DL3P43628 341 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms