RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 LAMP2P13473 410 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 NT5EP21589 574 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 PYCR1P32322 319 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 ADPRHP54922 357 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 TFF2Q03403 129 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 RGS1Q08116 209 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 TNK1Q13470 666 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 TMEM44Q2T9K0 475 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 TP53I3Q53FA7 332 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 PLA1AQ53H76 456 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 PRRT3Q5FWE3 981 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 FHL5Q5TD97 284 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 FCRL6Q6DN72 434 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 FAAH2Q6GMR7 532 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 OAFQ86UD1 273 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 LRRC28Q86X40 367 aaPredicted RBP6.93□□□□□ -1.3
LIMA1-213ENST00000552720 GID4Q8IVV7 300 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 ZNF619Q8N2I2 560 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 COX18Q8N8Q8 333 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 ABHD4Q8TB40 342 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 TRMT10AQ8TBZ6 339 aaKnown RBP6.93□□□□□ -1.3
LIMA1-213ENST00000552720 CNOT9Q92600 299 aaKnown RBP6.93□□□□□ -1.3
LIMA1-213ENST00000552720 AKAP1Q92667 903 aaKnown RBP eCLIP6.93□□□□□ -1.3
LIMA1-213ENST00000552720 RFT1Q96AA3 541 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 PGLYRP3Q96LB9 341 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 TNFRSF13CQ96RJ3 184 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 LRRN3Q9H3W5 708 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 SRMSQ9H3Y6 488 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 FN3KQ9H479 309 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 KIR3DX1Q9H7L2 352 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 CMC2Q9NRP2 79 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 NUDT15Q9NV35 164 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 ING3Q9NXR8 418 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 WSB2Q9NYS7 404 aaPredicted RBP6.93□□□□□ -1.3
LIMA1-213ENST00000552720 NTMQ9P121 344 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 SLC23A1Q9UHI7 598 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 ADAM30Q9UKF2 790 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 MRPS7Q9Y2R9 242 aaKnown RBP6.93□□□□□ -1.3
LIMA1-213ENST00000552720 FABP7O15540 132 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 HCRTR1O43613 425 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 STX11O75558 287 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 ADH1BP00325 375 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 CTSBP07858 339 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 SMIM10L1P0DMW3 83 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 NID1P14543 1247 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 SNRPBP14678 240 aaKnown RBP6.93□□□□□ -1.3
LIMA1-213ENST00000552720 AHCYP23526 432 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 CFL1P23528 166 aaKnown RBP6.93□□□□□ -1.3
LIMA1-213ENST00000552720 GABRA3P34903 492 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 ACTR1BP42025 376 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 PITPNBP48739 271 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 ACTR1AP61163 376 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 RPS15AP62244 130 aaKnown RBP6.93□□□□□ -1.3
LIMA1-213ENST00000552720 SHC2P98077 582 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 SLC36A2Q495M3 483 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 GXYLT1Q4G148 440 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 TIGD3Q6B0B8 471 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 USP53Q70EK8 1073 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 PRSS45Q7RTY3 260 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 LIX1LQ8IVB5 337 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 IZUMO1Q8IYV9 350 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 SDR9C7Q8NEX9 313 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 OR11H7Q8NGC8 314 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 OR4N2Q8NGD1 307 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 ZNRF4Q8WWF5 429 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 SMPDL3BQ92485 455 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 GHSRQ92847 366 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 PHF21AQ96BD5 680 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 TM4SF19Q96DZ7 209 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 ZMYND19Q96E35 227 aaPredicted RBP6.93□□□□□ -1.3
LIMA1-213ENST00000552720 SMIM10Q96HG1 83 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 AHCYL2Q96HN2 611 aaKnown RBP6.93□□□□□ -1.3
LIMA1-213ENST00000552720 ZFP3Q96NJ6 502 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 OR2M4Q96R27 311 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 UBL7Q96S82 380 aaPredicted RBP6.93□□□□□ -1.3
LIMA1-213ENST00000552720 NDC1Q9BTX1 674 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 GON7Q9BXV9 100 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 TMEM168Q9H0V1 697 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 PIGUQ9H490 435 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 ERVMER34-1Q9H9K5 563 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 OR6C2Q9NZP2 312 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 FLRT3Q9NZU0 649 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 SLC22A7Q9Y694 548 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 CACNG2Q9Y698 323 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 COLEC10Q9Y6Z7 277 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 ARID1BQ8NFD5 2236 aaPredicted RBP6.93□□□□□ -1.3
LIMA1-213ENST00000552720 LRP4O75096 1905 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 FAM86C2PA6NEL3 165 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 C3orf80F5H4A9 247 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 K7EQS6 105 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 PLRG1O43660 514 aaKnown RBP6.92□□□□□ -1.3
LIMA1-213ENST00000552720 PLPP2O43688 288 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 CHP2O43745 196 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 B3GALT2O43825 422 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 FZD7O75084 574 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 SOX30O94993 753 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 TFP02787 698 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 MT-ND5P03915 603 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 APODP05090 189 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 DBIP07108 87 aaKnown RBP6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms