RNA–Protein interactions for RNA: ENST00000550914.6

PTCH1-221, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-221ENST00000550914 PIP5K1BO14986 540 aa11.37□□□□□ -0.59
PTCH1-221ENST00000550914 SMAD9O15198 467 aaKnown RBP11.37□□□□□ -0.59
PTCH1-221ENST00000550914 LYZL6O75951 148 aa11.37□□□□□ -0.59
PTCH1-221ENST00000550914 AK1P00568 194 aa11.37□□□□□ -0.59
PTCH1-221ENST00000550914 NPIPA8P0DM63 369 aa11.37□□□□□ -0.59
PTCH1-221ENST00000550914 GGT1P19440 569 aa11.37□□□□□ -0.59
PTCH1-221ENST00000550914 PRPS1L1P21108 318 aa11.37□□□□□ -0.59
PTCH1-221ENST00000550914 PDK3Q15120 406 aa11.37□□□□□ -0.59
PTCH1-221ENST00000550914 QPRTQ15274 297 aa11.37□□□□□ -0.59
PTCH1-221ENST00000550914 SPDYE7PQ495Y7 208 aa11.37□□□□□ -0.59
PTCH1-221ENST00000550914 GALNT5Q7Z7M9 940 aa11.37□□□□□ -0.59
PTCH1-221ENST00000550914 ATG4DQ86TL0 474 aaPredicted RBP11.37□□□□□ -0.59
PTCH1-221ENST00000550914 ATP6V1C2Q8NEY4 427 aa11.37□□□□□ -0.59
PTCH1-221ENST00000550914 KIF18AQ8NI77 898 aa11.37□□□□□ -0.59
PTCH1-221ENST00000550914 OIT3Q8WWZ8 545 aa11.37□□□□□ -0.59
PTCH1-221ENST00000550914 ZNF75CPQ92670 426 aaPredicted RBP11.37□□□□□ -0.59
PTCH1-221ENST00000550914 OR7D2Q96RA2 312 aa11.37□□□□□ -0.59
PTCH1-221ENST00000550914 SDF2Q99470 211 aa11.37□□□□□ -0.59
PTCH1-221ENST00000550914 LAT2Q9GZY6 243 aa11.37□□□□□ -0.59
PTCH1-221ENST00000550914 ANKZF1Q9H8Y5 726 aa11.37□□□□□ -0.59
PTCH1-221ENST00000550914 EMC3Q9P0I2 261 aa11.37□□□□□ -0.59
PTCH1-221ENST00000550914 MGAT4BQ9UQ53 548 aa11.37□□□□□ -0.59
PTCH1-221ENST00000550914 KCNE3Q9Y6H6 103 aa11.37□□□□□ -0.59
PTCH1-221ENST00000550914 IGKV3D-15A0A087WSY6 115 aa11.36□□□□□ -0.59
PTCH1-221ENST00000550914 IGHV3-15A0A0B4J1V0 119 aa11.36□□□□□ -0.59
PTCH1-221ENST00000550914 A0A1W2PNR3 127 aa11.36□□□□□ -0.59
PTCH1-221ENST00000550914 SERINC4A6NH21 518 aa11.36□□□□□ -0.59
PTCH1-221ENST00000550914 OR5H1A6NKK0 313 aa11.36□□□□□ -0.59
PTCH1-221ENST00000550914 TMEM233B4DJY2 109 aa11.36□□□□□ -0.59
PTCH1-221ENST00000550914 ADAM11O75078 769 aa11.36□□□□□ -0.59
PTCH1-221ENST00000550914 PEX11AO75192 247 aa11.36□□□□□ -0.59
PTCH1-221ENST00000550914 C6orf47O95873 294 aa11.36□□□□□ -0.59
PTCH1-221ENST00000550914 CHRNGP07510 517 aa11.36□□□□□ -0.59
PTCH1-221ENST00000550914 SERPINB5P36952 375 aa11.36□□□□□ -0.59
PTCH1-221ENST00000550914 CDH11P55287 796 aa11.36□□□□□ -0.59
PTCH1-221ENST00000550914 C21orf58P58505 322 aa11.36□□□□□ -0.59
PTCH1-221ENST00000550914 CSNK2A1P68400 391 aaPredicted RBP11.36□□□□□ -0.59
PTCH1-221ENST00000550914 FAPQ12884 760 aa11.36□□□□□ -0.59
PTCH1-221ENST00000550914 SKP2Q13309 424 aa11.36□□□□□ -0.59
PTCH1-221ENST00000550914 PTGR1Q14914 329 aa11.36□□□□□ -0.59
PTCH1-221ENST00000550914 STK11Q15831 433 aa11.36□□□□□ -0.59
PTCH1-221ENST00000550914 ZNF141Q15928 474 aa11.36□□□□□ -0.59
PTCH1-221ENST00000550914 NDUFAF6Q330K2 333 aa11.36□□□□□ -0.59
PTCH1-221ENST00000550914 TIGD2Q4W5G0 525 aa11.36□□□□□ -0.59
PTCH1-221ENST00000550914 ATP6AP1LQ52LC2 224 aa11.36□□□□□ -0.59
PTCH1-221ENST00000550914 C6orf136Q5SQH8 315 aa11.36□□□□□ -0.59
PTCH1-221ENST00000550914 PDZK1Q5T2W1 519 aa11.36□□□□□ -0.59
PTCH1-221ENST00000550914 AGAP6Q5VW22 663 aa11.36□□□□□ -0.59
PTCH1-221ENST00000550914 HMBOX1Q6NT76 420 aa11.36□□□□□ -0.59
PTCH1-221ENST00000550914 RIMKLAQ8IXN7 391 aa11.36□□□□□ -0.59
PTCH1-221ENST00000550914 ZNF100Q8IYN0 542 aa11.36□□□□□ -0.59
PTCH1-221ENST00000550914 C4orf33Q8N1A6 199 aa11.36□□□□□ -0.59
PTCH1-221ENST00000550914 TMCO5AQ8N6Q1 288 aa11.36□□□□□ -0.59
PTCH1-221ENST00000550914 ZNF614Q8N883 585 aa11.36□□□□□ -0.59
PTCH1-221ENST00000550914 SLC25A43Q8WUT9 341 aaPredicted RBP11.36□□□□□ -0.59
PTCH1-221ENST00000550914 TMEM234Q8WY98 164 aa11.36□□□□□ -0.59
PTCH1-221ENST00000550914 ZNF524Q96C55 264 aa11.36□□□□□ -0.59
PTCH1-221ENST00000550914 OR5B2Q96R09 309 aa11.36□□□□□ -0.59
PTCH1-221ENST00000550914 RHOXF2Q9BQY4 288 aa11.36□□□□□ -0.59
PTCH1-221ENST00000550914 RHNO1Q9BSD3 238 aa11.36□□□□□ -0.59
PTCH1-221ENST00000550914 BHLHE41Q9C0J9 482 aaPredicted RBP11.36□□□□□ -0.59
PTCH1-221ENST00000550914 SERINC1Q9NRX5 453 aa11.36□□□□□ -0.59
PTCH1-221ENST00000550914 PRSS50Q9UI38 385 aa11.36□□□□□ -0.59
PTCH1-221ENST00000550914 ARFGEF3Q5TH69 2177 aa11.35□□□□□ -0.59
PTCH1-221ENST00000550914 ABCD4O14678 606 aa11.35□□□□□ -0.59
PTCH1-221ENST00000550914 DNPH1O43598 174 aa11.35□□□□□ -0.59
PTCH1-221ENST00000550914 RAMP1O60894 148 aa11.35□□□□□ -0.59
PTCH1-221ENST00000550914 STX11O75558 287 aa11.35□□□□□ -0.59
PTCH1-221ENST00000550914 H6PDO95479 791 aa11.35□□□□□ -0.59
PTCH1-221ENST00000550914 GUSBP08236 651 aa11.35□□□□□ -0.59
PTCH1-221ENST00000550914 PGCP20142 388 aa11.35□□□□□ -0.59
PTCH1-221ENST00000550914 IGHV1-2P23083 117 aa11.35□□□□□ -0.59
PTCH1-221ENST00000550914 FKBP2P26885 142 aaKnown RBP11.35□□□□□ -0.59
PTCH1-221ENST00000550914 ALDH3A1P30838 453 aa11.35□□□□□ -0.59
PTCH1-221ENST00000550914 DIO1P49895 249 aa11.35□□□□□ -0.59
PTCH1-221ENST00000550914 CCR4P51679 360 aa11.35□□□□□ -0.59
PTCH1-221ENST00000550914 DSCR9P59020 149 aa11.35□□□□□ -0.59
PTCH1-221ENST00000550914 FBXW9Q5XUX1 488 aa11.35□□□□□ -0.59
PTCH1-221ENST00000550914 AP1ARQ63HQ0 302 aa11.35□□□□□ -0.59
PTCH1-221ENST00000550914 ABLIM2Q6H8Q1 611 aa11.35□□□□□ -0.59
PTCH1-221ENST00000550914 TMEM108Q6UXF1 575 aa11.35□□□□□ -0.59
PTCH1-221ENST00000550914 TMPPEQ6ZT21 453 aa11.35□□□□□ -0.59
PTCH1-221ENST00000550914 MTDHQ86UE4 582 aaKnown RBP11.35□□□□□ -0.59
PTCH1-221ENST00000550914 ZNF433Q8N7K0 673 aaPredicted RBP11.35□□□□□ -0.59
PTCH1-221ENST00000550914 FNDC5Q8NAU1 212 aa11.35□□□□□ -0.59
PTCH1-221ENST00000550914 RFWD2Q8NHY2 731 aa11.35□□□□□ -0.59
PTCH1-221ENST00000550914 EPS8L3Q8TE67 593 aaKnown RBP11.35□□□□□ -0.59
PTCH1-221ENST00000550914 UBLCP1Q8WVY7 318 aaPredicted RBP11.35□□□□□ -0.59
PTCH1-221ENST00000550914 APOPT1Q96IL0 206 aa11.35□□□□□ -0.59
PTCH1-221ENST00000550914 ADAD1Q96M93 576 aaKnown RBP11.35□□□□□ -0.59
PTCH1-221ENST00000550914 ZNF300Q96RE9 604 aaPredicted RBP11.35□□□□□ -0.59
PTCH1-221ENST00000550914 THUMPD3Q9BV44 507 aaKnown RBP11.35□□□□□ -0.59
PTCH1-221ENST00000550914 DUSP26Q9BV47 211 aa11.35□□□□□ -0.59
PTCH1-221ENST00000550914 YAE1D1Q9NRH1 226 aa11.35□□□□□ -0.59
PTCH1-221ENST00000550914 ACER3Q9NUN7 267 aa11.35□□□□□ -0.59
PTCH1-221ENST00000550914 GDF2Q9UK05 429 aaPredicted RBP11.35□□□□□ -0.59
PTCH1-221ENST00000550914 B3GALT5Q9Y2C3 310 aa11.35□□□□□ -0.59
PTCH1-221ENST00000550914 SPIN1Q9Y657 262 aaPredicted RBP11.35□□□□□ -0.59
PTCH1-221ENST00000550914 MALRD1Q5VYJ5 2156 aa11.35□□□□□ -0.59
PTCH1-221ENST00000550914 SMIM23A6NLE4 172 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms