RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 OR2B2Q9GZK3 357 aa3.17□□□□□ -1.9
LIMA1-206ENST00000550611 WWTR1Q9GZV5 400 aa3.17□□□□□ -1.9
LIMA1-206ENST00000550611 EHD1Q9H4M9 534 aa3.17□□□□□ -1.9
LIMA1-206ENST00000550611 CHODLQ9H9P2 273 aa3.17□□□□□ -1.9
LIMA1-206ENST00000550611 UBTD1Q9HAC8 227 aa3.17□□□□□ -1.9
LIMA1-206ENST00000550611 PLAC1Q9HBJ0 212 aa3.17□□□□□ -1.9
LIMA1-206ENST00000550611 IARS2Q9NSE4 1012 aaKnown RBP3.17□□□□□ -1.9
LIMA1-206ENST00000550611 C20orf96Q9NUD7 363 aaPredicted RBP3.17□□□□□ -1.9
LIMA1-206ENST00000550611 KLHL28Q9NXS3 571 aa3.17□□□□□ -1.9
LIMA1-206ENST00000550611 ZNF226Q9NYT6 803 aa3.17□□□□□ -1.9
LIMA1-206ENST00000550611 CLCF1Q9UBD9 225 aa3.17□□□□□ -1.9
LIMA1-206ENST00000550611 MGAT4CQ9UBM8 478 aa3.17□□□□□ -1.9
LIMA1-206ENST00000550611 RAB21Q9UL25 225 aa3.17□□□□□ -1.9
LIMA1-206ENST00000550611 C19orf53Q9UNZ5 99 aaPredicted RBP3.17□□□□□ -1.9
LIMA1-206ENST00000550611 DTX4Q9Y2E6 619 aa3.17□□□□□ -1.9
LIMA1-206ENST00000550611 MAD1L1Q9Y6D9 718 aa3.17□□□□□ -1.9
LIMA1-206ENST00000550611 KCNE2Q9Y6J6 123 aa3.17□□□□□ -1.9
LIMA1-206ENST00000550611 ROS1P08922 2347 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 PCLOQ9Y6V0 5065 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 SCN3AQ9NY46 2000 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 A0A096LNT2 108 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 ANKDD1BA6NHY2 528 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 A8MV72 311 aaPredicted RBP3.16□□□□□ -1.9
LIMA1-206ENST00000550611 EFCAB8A8MWE9 144 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 B4DXG7 233 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 C16orf97H3BN30 126 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 CDC7O00311 574 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 RTCAO00442 366 aaKnown RBP3.16□□□□□ -1.9
LIMA1-206ENST00000550611 PLOD2O00469 737 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 TP53I11O14683 189 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 TAPBPO15533 448 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 SPRY2O43597 315 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 ZIC3O60481 467 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 CDH16O75309 829 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 CBR3O75828 277 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 GPR75O95800 540 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 AIFM1O95831 613 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 PLAUP00749 431 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 ABCB1P08183 1280 aaPredicted RBP3.16□□□□□ -1.9
LIMA1-206ENST00000550611 CYP4B1P13584 511 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 ZNF708P17019 499 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 NAGAP17050 411 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 GNAZP19086 355 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 EPORP19235 508 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 S1PR1P21453 382 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 HIST1H1TP22492 207 aaPredicted RBP3.16□□□□□ -1.9
LIMA1-206ENST00000550611 HPDP32754 393 aaPredicted RBP3.16□□□□□ -1.9
LIMA1-206ENST00000550611 MSH2P43246 934 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 CPA2P48052 419 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 STARP49675 285 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 HNMTP50135 292 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 LHX2P50458 406 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 DIO3P55073 304 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 ATP5J2P56134 94 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 CLDN15P56746 228 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 CLDN18P56856 261 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 FBXW4P57775 412 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 B3GALT5-AS1P59052 145 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 HILS1P60008 231 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 SARNPP82979 210 aaKnown RBP3.16□□□□□ -1.9
LIMA1-206ENST00000550611 TXNL4AP83876 142 aaKnown RBP3.16□□□□□ -1.9
LIMA1-206ENST00000550611 SNTA1Q13424 505 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 DOC2AQ14183 400 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 RCAN2Q14206 197 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 CYP1B1Q16678 543 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 CLEC12BQ2HXU8 276 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 C18orf21Q32NC0 220 aaPredicted RBP3.16□□□□□ -1.9
LIMA1-206ENST00000550611 SEL1L2Q5TEA6 688 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 ADAM5Q6NVV9 412 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 TRIM40Q6P9F5 258 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 TRABD2AQ86V40 505 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 TMEM139Q8IV31 216 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 ST13P4Q8IZP2 240 aaPredicted RBP3.16□□□□□ -1.9
LIMA1-206ENST00000550611 GCNT2Q8N0V5 402 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 RNF10Q8N5U6 811 aaKnown RBP3.16□□□□□ -1.9
LIMA1-206ENST00000550611 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.16□□□□□ -1.9
LIMA1-206ENST00000550611 ZNF615Q8N8J6 731 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 NAT8LQ8N9F0 302 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 WDSUB1Q8N9V3 476 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 SRFBP1Q8NEF9 429 aaKnown RBP3.16□□□□□ -1.9
LIMA1-206ENST00000550611 C17orf47Q8NEP4 570 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 OR6Y1Q8NGX8 325 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 DOK4Q8TEW6 326 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 ZNF473Q8WTR7 871 aaKnown RBP3.16□□□□□ -1.9
LIMA1-206ENST00000550611 RNF138Q8WVD3 245 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 TANKQ92844 425 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 HGDQ93099 445 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 RHBDF1Q96CC6 855 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 RBM18Q96H35 190 aaKnown RBP3.16□□□□□ -1.9
LIMA1-206ENST00000550611 ART5Q96L15 291 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 JSRP1Q96MG2 331 aaPredicted RBP3.16□□□□□ -1.9
LIMA1-206ENST00000550611 DGAT2Q96PD7 388 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 MECRQ9BV79 373 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 CAPS2Q9BXY5 557 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 BEX2Q9BXY8 128 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 MS4A8Q9BY19 250 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 ROGDIQ9GZN7 287 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 TSPYL1Q9H0U9 437 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 SAP30LQ9HAJ7 183 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 XAB2Q9HCS7 855 aaKnown RBP3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms