RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 ZNF765Q7L2R6 523 aa4.9□□□□□ -1.63
USP28-213ENST00000544967 NUDT13Q86X67 352 aa4.9□□□□□ -1.63
USP28-213ENST00000544967 RYBPQ8N488 228 aaPredicted RBP4.9□□□□□ -1.63
USP28-213ENST00000544967 SMAP2Q8WU79 429 aaPredicted RBP4.9□□□□□ -1.63
USP28-213ENST00000544967 KISS1RQ969F8 398 aaPredicted RBP4.9□□□□□ -1.63
USP28-213ENST00000544967 SENP5Q96HI0 755 aaPredicted RBP4.9□□□□□ -1.63
USP28-213ENST00000544967 ZNF354BQ96LW1 612 aa4.9□□□□□ -1.63
USP28-213ENST00000544967 MTERF1Q99551 399 aaKnown RBP4.9□□□□□ -1.63
USP28-213ENST00000544967 GPR21Q99679 349 aa4.9□□□□□ -1.63
USP28-213ENST00000544967 CDC6Q99741 560 aa4.9□□□□□ -1.63
USP28-213ENST00000544967 CPEB1Q9BZB8 566 aaKnown RBP4.9□□□□□ -1.63
USP28-213ENST00000544967 SEMA4CQ9C0C4 833 aa4.9□□□□□ -1.63
USP28-213ENST00000544967 P2RY12Q9H244 342 aa4.9□□□□□ -1.63
USP28-213ENST00000544967 GPN1Q9HCN4 374 aaPredicted RBP4.9□□□□□ -1.63
USP28-213ENST00000544967 DMRT3Q9NQL9 472 aa4.9□□□□□ -1.63
USP28-213ENST00000544967 NUDT15Q9NV35 164 aa4.9□□□□□ -1.63
USP28-213ENST00000544967 MED17Q9NVC6 651 aa4.9□□□□□ -1.63
USP28-213ENST00000544967 TAS2R16Q9NYV7 291 aa4.9□□□□□ -1.63
USP28-213ENST00000544967 ABRACLQ9P1F3 81 aa4.9□□□□□ -1.63
USP28-213ENST00000544967 RPS6KB2Q9UBS0 482 aa4.9□□□□□ -1.63
USP28-213ENST00000544967 SRPK3Q9UPE1 567 aa4.9□□□□□ -1.63
USP28-213ENST00000544967 MYO7AQ13402 2215 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 KCNE1BA0A087WTH5 132 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 GSAPA4D1B5 854 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 ARGFXA6NJG6 315 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 KDM4EB2RXH2 506 aaPredicted RBP4.89□□□□□ -1.63
USP28-213ENST00000544967 BLOC1S5-TXNDC5H3BN57 136 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 ZNF593O00488 134 aaPredicted RBP4.89□□□□□ -1.63
USP28-213ENST00000544967 RNASET2O00584 256 aaKnown RBP4.89□□□□□ -1.63
USP28-213ENST00000544967 FFAR2O15552 330 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 PRODHO43272 600 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 REM1O75628 298 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 KAT7O95251 611 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 C1SP09871 688 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 CBSLP0DN79 551 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 CBSP35520 551 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 RPL3P39023 403 aaKnown RBP4.89□□□□□ -1.63
USP28-213ENST00000544967 RGS4P49798 205 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 SEC61A1P61619 476 aaKnown RBP4.89□□□□□ -1.63
USP28-213ENST00000544967 ARF5P84085 180 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 EEF1A2Q05639 463 aaKnown RBP4.89□□□□□ -1.63
USP28-213ENST00000544967 ECH1Q13011 328 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 KLF9Q13886 244 aaPredicted RBP4.89□□□□□ -1.63
USP28-213ENST00000544967 FGL2Q14314 439 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 ZNF345Q14585 488 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 LAPTM4AQ15012 233 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 EEF1AKMT2Q5JPI9 291 aaKnown RBP4.89□□□□□ -1.63
USP28-213ENST00000544967 TMEM91Q6ZNR0 172 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 TPRG1Q6ZUI0 275 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 GLCCI1Q86VQ1 547 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 YAF2Q8IY57 180 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 KLHDC8AQ8IYD2 350 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 SPAG16Q8N0X2 631 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 OXR1Q8N573 874 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 DTWD2Q8NBA8 298 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 POGLUT1Q8NBL1 392 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 PXT1Q8NFP0 134 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 SLC7A13Q8TCU3 470 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 GNPDA2Q8TDQ7 276 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 PNPLA2Q96AD5 504 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 LINGO1Q96FE5 620 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 SIPA1Q96FS4 1042 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 ZDHHC12Q96GR4 267 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 FUZQ9BT04 418 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 MRI1Q9BV20 369 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 HDHD2Q9H0R4 259 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 MTG2Q9H4K7 406 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 EPHX3Q9H6B9 360 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 BARX1Q9HBU1 254 aaPredicted RBP4.89□□□□□ -1.63
USP28-213ENST00000544967 AMBNQ9NP70 447 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 NRIP3Q9NQ35 241 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 PRDM9Q9NQV7 894 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 TMPRSS4Q9NRS4 437 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 SPHK1Q9NYA1 384 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 RASL12Q9NYN1 266 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 PIPOXQ9P0Z9 390 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 EXOGQ9Y2C4 368 aaKnown RBP4.89□□□□□ -1.63
USP28-213ENST00000544967 CBY1Q9Y3M2 126 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 DMRT1Q9Y5R6 373 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 BLACEA4D250 179 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 ARHGEF33A8MVX0 844 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 LINC01387J3KSC0 135 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 STX11O75558 287 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 GADD45GO95257 159 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 CLDN9O95484 217 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 IGHA1P01876 353 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 APODP05090 189 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 ACAA1P09110 424 aaPredicted RBP4.89□□□□□ -1.63
USP28-213ENST00000544967 MGMTP16455 207 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 SDC1P18827 310 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 CXCL2P19875 107 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 GSTM3P21266 225 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 GIPRP48546 466 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 CLCN7P51798 805 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 CASP9P55211 416 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 RPS25P62851 125 aaKnown RBP4.89□□□□□ -1.63
USP28-213ENST00000544967 FABP5Q01469 135 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 SRSF4Q08170 494 aaKnown RBP4.89□□□□□ -1.63
USP28-213ENST00000544967 CRYZQ08257 329 aaKnown RBP4.89□□□□□ -1.63
USP28-213ENST00000544967 CDH18Q13634 790 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms