RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 ZNF474Q6S9Z5 364 aaPredicted RBP12.7□□□□□ -0.38
USP28-209ENST00000540925 HMGN2P46Q86SG4 172 aa12.7□□□□□ -0.38
USP28-209ENST00000540925 LUZP2Q86TE4 346 aa12.7□□□□□ -0.38
USP28-209ENST00000540925 TMCO5AQ8N6Q1 288 aa12.7□□□□□ -0.38
USP28-209ENST00000540925 RNF128Q8TEB7 428 aa12.7□□□□□ -0.38
USP28-209ENST00000540925 SLC38A5Q8WUX1 472 aa12.7□□□□□ -0.38
USP28-209ENST00000540925 CNOT9Q92600 299 aaKnown RBP12.7□□□□□ -0.38
USP28-209ENST00000540925 OSTF1Q92882 214 aa12.7□□□□□ -0.38
USP28-209ENST00000540925 GMPPAQ96IJ6 420 aaPredicted RBP12.7□□□□□ -0.38
USP28-209ENST00000540925 SRXN1Q9BYN0 137 aa12.7□□□□□ -0.38
USP28-209ENST00000540925 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.7□□□□□ -0.38
USP28-209ENST00000540925 DNAJB12Q9NXW2 375 aaKnown RBP12.7□□□□□ -0.38
USP28-209ENST00000540925 CCDC168Q8NDH2 2452 aa12.69□□□□□ -0.38
USP28-209ENST00000540925 FAAHO00519 579 aa12.69□□□□□ -0.38
USP28-209ENST00000540925 EPXP11678 715 aa12.69□□□□□ -0.38
USP28-209ENST00000540925 PGCP20142 388 aa12.69□□□□□ -0.38
USP28-209ENST00000540925 CCKARP32238 428 aa12.69□□□□□ -0.38
USP28-209ENST00000540925 SFTPDP35247 375 aa12.69□□□□□ -0.38
USP28-209ENST00000540925 CARD18P57730 90 aa12.69□□□□□ -0.38
USP28-209ENST00000540925 HPCAP84074 193 aa12.69□□□□□ -0.38
USP28-209ENST00000540925 SQLEQ14534 574 aa12.69□□□□□ -0.38
USP28-209ENST00000540925 RGNQ15493 299 aa12.69□□□□□ -0.38
USP28-209ENST00000540925 SGCBQ16585 318 aa12.69□□□□□ -0.38
USP28-209ENST00000540925 TMEM176BQ3YBM2 270 aaPredicted RBP12.69□□□□□ -0.38
USP28-209ENST00000540925 PAGE3Q5JUK9 113 aa12.69□□□□□ -0.38
USP28-209ENST00000540925 PLEKHM3Q6ZWE6 761 aa12.69□□□□□ -0.38
USP28-209ENST00000540925 CNEP1R1Q8N9A8 125 aa12.69□□□□□ -0.38
USP28-209ENST00000540925 RFWD2Q8NHY2 731 aa12.69□□□□□ -0.38
USP28-209ENST00000540925 SPDL1Q96EA4 605 aa12.69□□□□□ -0.38
USP28-209ENST00000540925 CCDC106Q9BWC9 280 aa12.69□□□□□ -0.38
USP28-209ENST00000540925 OPN3Q9H1Y3 402 aaPredicted RBP12.69□□□□□ -0.38
USP28-209ENST00000540925 PLSCR4Q9NRQ2 329 aa12.69□□□□□ -0.38
USP28-209ENST00000540925 GLRX2Q9NS18 164 aa12.69□□□□□ -0.38
USP28-209ENST00000540925 THUMPD1Q9NXG2 353 aaKnown RBP12.69□□□□□ -0.38
USP28-209ENST00000540925 CCDC167Q9P0B6 97 aa12.69□□□□□ -0.38
USP28-209ENST00000540925 SLAMF8Q9P0V8 285 aa12.69□□□□□ -0.38
USP28-209ENST00000540925 P2RX2Q9UBL9 471 aa12.69□□□□□ -0.38
USP28-209ENST00000540925 MCTS1Q9ULC4 181 aaKnown RBP12.69□□□□□ -0.38
USP28-209ENST00000540925 VPS13CQ709C8 3753 aa12.69□□□□□ -0.38
USP28-209ENST00000540925 MPDZO75970 2070 aa12.68□□□□□ -0.38
USP28-209ENST00000540925 TUBAL3A6NHL2 446 aa12.68□□□□□ -0.38
USP28-209ENST00000540925 GJE1A6NN92 205 aa12.68□□□□□ -0.38
USP28-209ENST00000540925 A6NNC1 897 aa12.68□□□□□ -0.38
USP28-209ENST00000540925 CLIC1O00299 241 aa12.68□□□□□ -0.38
USP28-209ENST00000540925 ANP32DO95626 131 aa12.68□□□□□ -0.38
USP28-209ENST00000540925 DBIP07108 87 aaKnown RBP12.68□□□□□ -0.38
USP28-209ENST00000540925 NR2F1P10589 423 aa12.68□□□□□ -0.38
USP28-209ENST00000540925 CRATP43155 626 aa12.68□□□□□ -0.38
USP28-209ENST00000540925 CCR4P51679 360 aa12.68□□□□□ -0.38
USP28-209ENST00000540925 RIPPLY3P57055 190 aa12.68□□□□□ -0.38
USP28-209ENST00000540925 DSTNP60981 165 aa12.68□□□□□ -0.38
USP28-209ENST00000540925 FADDQ13158 208 aa12.68□□□□□ -0.38
USP28-209ENST00000540925 C6orf10Q5SRN2 563 aa12.68□□□□□ -0.38
USP28-209ENST00000540925 PDSS1Q5T2R2 415 aa12.68□□□□□ -0.38
USP28-209ENST00000540925 C3orf33Q6P1S2 294 aa12.68□□□□□ -0.38
USP28-209ENST00000540925 C10orf111Q8N326 155 aa12.68□□□□□ -0.38
USP28-209ENST00000540925 OR6K3Q8NGY3 331 aa12.68□□□□□ -0.38
USP28-209ENST00000540925 LINC01560Q8TB33 94 aa12.68□□□□□ -0.38
USP28-209ENST00000540925 TMEM234Q8WY98 164 aa12.68□□□□□ -0.38
USP28-209ENST00000540925 CPNE4Q96A23 557 aaPredicted RBP12.68□□□□□ -0.38
USP28-209ENST00000540925 DACH2Q96NX9 599 aa12.68□□□□□ -0.38
USP28-209ENST00000540925 SIKE1Q9BRV8 207 aa12.68□□□□□ -0.38
USP28-209ENST00000540925 RSPO3Q9BXY4 272 aaPredicted RBP12.68□□□□□ -0.38
USP28-209ENST00000540925 GP6Q9HCN6 339 aa12.68□□□□□ -0.38
USP28-209ENST00000540925 BCL2L10Q9HD36 194 aa12.68□□□□□ -0.38
USP28-209ENST00000540925 A4GALTQ9NPC4 353 aa12.68□□□□□ -0.38
USP28-209ENST00000540925 RASSF1Q9NS23 344 aa12.68□□□□□ -0.38
USP28-209ENST00000540925 ING1Q9UK53 422 aaPredicted RBP12.68□□□□□ -0.38
USP28-209ENST00000540925 CHST2Q9Y4C5 530 aa12.68□□□□□ -0.38
USP28-209ENST00000540925 A0A1W2PP18 115 aa12.67□□□□□ -0.38
USP28-209ENST00000540925 CDHR4A6H8M9 788 aa12.67□□□□□ -0.38
USP28-209ENST00000540925 NR5A2O00482 541 aa12.67□□□□□ -0.38
USP28-209ENST00000540925 AP3D1O14617 1153 aa12.67□□□□□ -0.38
USP28-209ENST00000540925 CYP7B1O75881 506 aa12.67□□□□□ -0.38
USP28-209ENST00000540925 GOSR1O95249 250 aa12.67□□□□□ -0.38
USP28-209ENST00000540925 SYNGR4O95473 234 aa12.67□□□□□ -0.38
USP28-209ENST00000540925 NUDT7P0C024 238 aa12.67□□□□□ -0.38
USP28-209ENST00000540925 AGTR1P30556 359 aa12.67□□□□□ -0.38
USP28-209ENST00000540925 CD79BP40259 229 aa12.67□□□□□ -0.38
USP28-209ENST00000540925 APOBEC1P41238 236 aaKnown RBP12.67□□□□□ -0.38
USP28-209ENST00000540925 CPA2P48052 419 aa12.67□□□□□ -0.38
USP28-209ENST00000540925 CRISP3P54108 245 aa12.67□□□□□ -0.38
USP28-209ENST00000540925 RAC3P60763 192 aa12.67□□□□□ -0.38
USP28-209ENST00000540925 SIRPAP78324 504 aa12.67□□□□□ -0.38
USP28-209ENST00000540925 FAM27E3Q08E93 113 aa12.67□□□□□ -0.38
USP28-209ENST00000540925 MRPL2Q5T653 305 aaKnown RBP12.67□□□□□ -0.38
USP28-209ENST00000540925 RNF220Q5VTB9 566 aa12.67□□□□□ -0.38
USP28-209ENST00000540925 PRAMEF8Q5VWM4 474 aa12.67□□□□□ -0.38
USP28-209ENST00000540925 PRAMEF7Q5VXH5 474 aa12.67□□□□□ -0.38
USP28-209ENST00000540925 DLEU7Q6UYE1 221 aa12.67□□□□□ -0.38
USP28-209ENST00000540925 GRINAQ7Z429 371 aa12.67□□□□□ -0.38
USP28-209ENST00000540925 ADGRG3Q86Y34 549 aa12.67□□□□□ -0.38
USP28-209ENST00000540925 ARFGAP2Q8N6H7 521 aa12.67□□□□□ -0.38
USP28-209ENST00000540925 ZNF610Q8N9Z0 462 aa12.67□□□□□ -0.38
USP28-209ENST00000540925 WDR60Q8WVS4 1066 aa12.67□□□□□ -0.38
USP28-209ENST00000540925 ROBO4Q8WZ75 1007 aa12.67□□□□□ -0.38
USP28-209ENST00000540925 TMEM19Q96HH6 336 aa12.67□□□□□ -0.38
USP28-209ENST00000540925 NPHS2Q9NP85 383 aa12.67□□□□□ -0.38
USP28-209ENST00000540925 ELOVL5Q9NYP7 299 aa12.67□□□□□ -0.38
USP28-209ENST00000540925 CALML5Q9NZT1 146 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms