RNA–Protein interactions for RNA: ENST00000540906.1

AP003559.1-201, humanhuman

TSL 3 BASIC

Gene AP003559.1, Length 1,831 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP003559.1-201ENST00000540906 OR52D1Q9H346 318 aa11.22□□□□□ -0.61
AP003559.1-201ENST00000540906 ACOT13Q9NPJ3 140 aa11.22□□□□□ -0.61
AP003559.1-201ENST00000540906 TMEM9BQ9NQ34 198 aa11.22□□□□□ -0.61
AP003559.1-201ENST00000540906 NCDNQ9UBB6 729 aa11.22□□□□□ -0.61
AP003559.1-201ENST00000540906 PISDQ9UG56 409 aa11.22□□□□□ -0.61
AP003559.1-201ENST00000540906 RSL24D1Q9UHA3 163 aaKnown RBP11.22□□□□□ -0.61
AP003559.1-201ENST00000540906 MED31Q9Y3C7 131 aa11.22□□□□□ -0.61
AP003559.1-201ENST00000540906 PTRH2Q9Y3E5 179 aaKnown RBP11.22□□□□□ -0.61
AP003559.1-201ENST00000540906 PCDHGB1Q9Y5G3 927 aa11.22□□□□□ -0.61
AP003559.1-201ENST00000540906 MPDZO75970 2070 aa11.22□□□□□ -0.61
AP003559.1-201ENST00000540906 ZFHX2Q9C0A1 2572 aaPredicted RBP11.21□□□□□ -0.61
AP003559.1-201ENST00000540906 OTOGLQ3ZCN5 2332 aa11.21□□□□□ -0.61
AP003559.1-201ENST00000540906 STK17BO94768 372 aa11.21□□□□□ -0.61
AP003559.1-201ENST00000540906 HPGDP15428 266 aa11.21□□□□□ -0.61
AP003559.1-201ENST00000540906 NR4A1P22736 598 aa11.21□□□□□ -0.61
AP003559.1-201ENST00000540906 SMSP52788 366 aa11.21□□□□□ -0.61
AP003559.1-201ENST00000540906 PNLIPRP2P54317 469 aa11.21□□□□□ -0.61
AP003559.1-201ENST00000540906 GAS1P54826 345 aa11.21□□□□□ -0.61
AP003559.1-201ENST00000540906 ZNF91Q05481 1191 aa11.21□□□□□ -0.61
AP003559.1-201ENST00000540906 CRYZQ08257 329 aaKnown RBP11.21□□□□□ -0.61
AP003559.1-201ENST00000540906 ST3GAL4Q11206 333 aa11.21□□□□□ -0.61
AP003559.1-201ENST00000540906 IRF3Q14653 427 aa11.21□□□□□ -0.61
AP003559.1-201ENST00000540906 SNAPC1Q16533 368 aa11.21□□□□□ -0.61
AP003559.1-201ENST00000540906 GXYLT1Q4G148 440 aa11.21□□□□□ -0.61
AP003559.1-201ENST00000540906 SYT14P1Q58G82 188 aa11.21□□□□□ -0.61
AP003559.1-201ENST00000540906 BICRALQ6AI39 1079 aa11.21□□□□□ -0.61
AP003559.1-201ENST00000540906 ULK3Q6PHR2 472 aa11.21□□□□□ -0.61
AP003559.1-201ENST00000540906 LYPD8Q6UX82 237 aa11.21□□□□□ -0.61
AP003559.1-201ENST00000540906 TMPRSS11FQ6ZWK6 438 aa11.21□□□□□ -0.61
AP003559.1-201ENST00000540906 RAB11FIP2Q7L804 512 aa11.21□□□□□ -0.61
AP003559.1-201ENST00000540906 ATG4DQ86TL0 474 aaPredicted RBP11.21□□□□□ -0.61
AP003559.1-201ENST00000540906 ZNF527Q8NB42 609 aa11.21□□□□□ -0.61
AP003559.1-201ENST00000540906 C17orf47Q8NEP4 570 aa11.21□□□□□ -0.61
AP003559.1-201ENST00000540906 IPCEF1Q8WWN9 437 aaPredicted RBP11.21□□□□□ -0.61
AP003559.1-201ENST00000540906 VMP1Q96GC9 406 aa11.21□□□□□ -0.61
AP003559.1-201ENST00000540906 ZNF582Q96NG8 517 aaPredicted RBP11.21□□□□□ -0.61
AP003559.1-201ENST00000540906 LPAR4Q99677 370 aa11.21□□□□□ -0.61
AP003559.1-201ENST00000540906 CMKLR1Q99788 373 aa11.21□□□□□ -0.61
AP003559.1-201ENST00000540906 UBQLN3Q9H347 655 aa11.21□□□□□ -0.61
AP003559.1-201ENST00000540906 EVA1AQ9H8M9 152 aa11.21□□□□□ -0.61
AP003559.1-201ENST00000540906 WDR54Q9H977 334 aa11.21□□□□□ -0.61
AP003559.1-201ENST00000540906 MCCC2Q9HCC0 563 aa11.21□□□□□ -0.61
AP003559.1-201ENST00000540906 HHATLQ9HCP6 504 aa11.21□□□□□ -0.61
AP003559.1-201ENST00000540906 CLN6Q9NWW5 311 aa11.21□□□□□ -0.61
AP003559.1-201ENST00000540906 SIGLEC7Q9Y286 467 aa11.21□□□□□ -0.61
AP003559.1-201ENST00000540906 NPFFR2Q9Y5X5 522 aa11.21□□□□□ -0.61
AP003559.1-201ENST00000540906 SDK2Q58EX2 2172 aa11.21□□□□□ -0.62
AP003559.1-201ENST00000540906 A0A087WUJ7 227 aa11.21□□□□□ -0.62
AP003559.1-201ENST00000540906 ZNF99A8MXY4 864 aaPredicted RBP11.21□□□□□ -0.62
AP003559.1-201ENST00000540906 C9orf172C9J069 976 aa11.21□□□□□ -0.62
AP003559.1-201ENST00000540906 ALG1L2C9J202 215 aa11.21□□□□□ -0.62
AP003559.1-201ENST00000540906 GTPBP1O00178 669 aaKnown RBP11.21□□□□□ -0.62
AP003559.1-201ENST00000540906 SURF4O15260 269 aa11.21□□□□□ -0.62
AP003559.1-201ENST00000540906 PTP4A3O75365 173 aa11.21□□□□□ -0.62
AP003559.1-201ENST00000540906 CSO75390 466 aaKnown RBP11.21□□□□□ -0.62
AP003559.1-201ENST00000540906 APOL3O95236 402 aa11.21□□□□□ -0.62
AP003559.1-201ENST00000540906 ATE1O95260 518 aa11.21□□□□□ -0.62
AP003559.1-201ENST00000540906 PTHP01270 115 aa11.21□□□□□ -0.62
AP003559.1-201ENST00000540906 KLK3P07288 261 aaPredicted RBP11.21□□□□□ -0.62
AP003559.1-201ENST00000540906 TGM1P22735 817 aa11.21□□□□□ -0.62
AP003559.1-201ENST00000540906 DCKP27707 260 aa11.21□□□□□ -0.62
AP003559.1-201ENST00000540906 EVI2BP34910 448 aa11.21□□□□□ -0.62
AP003559.1-201ENST00000540906 NBL1P41271 181 aa11.21□□□□□ -0.62
AP003559.1-201ENST00000540906 DHRS13Q6UX07 377 aa11.21□□□□□ -0.62
AP003559.1-201ENST00000540906 SLC46A3Q7Z3Q1 461 aa11.21□□□□□ -0.62
AP003559.1-201ENST00000540906 MARCH9Q86YJ5 346 aa11.21□□□□□ -0.62
AP003559.1-201ENST00000540906 C7orf57Q8NEG2 295 aa11.21□□□□□ -0.62
AP003559.1-201ENST00000540906 BBS1Q8NFJ9 593 aa11.21□□□□□ -0.62
AP003559.1-201ENST00000540906 OR8J1Q8NGP2 316 aa11.21□□□□□ -0.62
AP003559.1-201ENST00000540906 OR51A7Q8NH64 312 aa11.21□□□□□ -0.62
AP003559.1-201ENST00000540906 FANK1Q8TC84 345 aa11.21□□□□□ -0.62
AP003559.1-201ENST00000540906 BRIX1Q8TDN6 353 aaKnown RBP11.21□□□□□ -0.62
AP003559.1-201ENST00000540906 HGDQ93099 445 aa11.21□□□□□ -0.62
AP003559.1-201ENST00000540906 TP53INP1Q96A56 240 aa11.21□□□□□ -0.62
AP003559.1-201ENST00000540906 C12orf43Q96C57 262 aaKnown RBP11.21□□□□□ -0.62
AP003559.1-201ENST00000540906 LRR1Q96L50 414 aa11.21□□□□□ -0.62
AP003559.1-201ENST00000540906 HS6ST2Q96MM7 605 aa11.21□□□□□ -0.62
AP003559.1-201ENST00000540906 DEPDC7Q96QD5 511 aa11.21□□□□□ -0.62
AP003559.1-201ENST00000540906 TNFRSF13CQ96RJ3 184 aa11.21□□□□□ -0.62
AP003559.1-201ENST00000540906 NPAS1Q99742 590 aa11.21□□□□□ -0.62
AP003559.1-201ENST00000540906 LAT2Q9GZY6 243 aa11.21□□□□□ -0.62
AP003559.1-201ENST00000540906 EXOSC3Q9NQT5 275 aaKnown RBP11.21□□□□□ -0.62
AP003559.1-201ENST00000540906 FOXJ2Q9P0K8 574 aa11.21□□□□□ -0.62
AP003559.1-201ENST00000540906 RPS6KB2Q9UBS0 482 aa11.21□□□□□ -0.62
AP003559.1-201ENST00000540906 GPN3Q9UHW5 284 aaPredicted RBP11.21□□□□□ -0.62
AP003559.1-201ENST00000540906 MRTO4Q9UKD2 239 aaKnown RBP11.21□□□□□ -0.62
AP003559.1-201ENST00000540906 ICAM5Q9UMF0 924 aa11.21□□□□□ -0.62
AP003559.1-201ENST00000540906 HS3ST3B1Q9Y662 390 aa11.21□□□□□ -0.62
AP003559.1-201ENST00000540906 LOC102723996A0A087X1L8 192 aa11.2□□□□□ -0.62
AP003559.1-201ENST00000540906 EFCAB9A8MZ26 197 aa11.2□□□□□ -0.62
AP003559.1-201ENST00000540906 M0R082 166 aa11.2□□□□□ -0.62
AP003559.1-201ENST00000540906 BHLHE40O14503 412 aa11.2□□□□□ -0.62
AP003559.1-201ENST00000540906 MPZL2O60487 215 aa11.2□□□□□ -0.62
AP003559.1-201ENST00000540906 PPM1BO75688 479 aa11.2□□□□□ -0.62
AP003559.1-201ENST00000540906 COX6A1P12074 109 aa11.2□□□□□ -0.62
AP003559.1-201ENST00000540906 NHLH1Q02575 133 aa11.2□□□□□ -0.62
AP003559.1-201ENST00000540906 OCLNQ16625 522 aa11.2□□□□□ -0.62
AP003559.1-201ENST00000540906 ZSWIM7Q19AV6 140 aa11.2□□□□□ -0.62
AP003559.1-201ENST00000540906 FCRLBQ6BAA4 426 aa11.2□□□□□ -0.62
AP003559.1-201ENST00000540906 SLC16A12Q6ZSM3 486 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms