RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 TMEM114B3SHH9 223 aa11.98□□□□□ -0.49
SS18-204ENST00000539244 ZNF264O43296 627 aa11.98□□□□□ -0.49
SS18-204ENST00000539244 H6PDO95479 791 aa11.98□□□□□ -0.49
SS18-204ENST00000539244 FAM153BP0C7A2 387 aa11.98□□□□□ -0.49
SS18-204ENST00000539244 FAM157CP0CG43 387 aa11.98□□□□□ -0.49
SS18-204ENST00000539244 LAMP1P11279 417 aa11.98□□□□□ -0.49
SS18-204ENST00000539244 DSCR9P59020 149 aa11.98□□□□□ -0.49
SS18-204ENST00000539244 IRX1P78414 480 aaPredicted RBP11.98□□□□□ -0.49
SS18-204ENST00000539244 CBFBQ13951 182 aa11.98□□□□□ -0.49
SS18-204ENST00000539244 PCLAFQ15004 111 aa11.98□□□□□ -0.49
SS18-204ENST00000539244 PDK3Q15120 406 aa11.98□□□□□ -0.49
SS18-204ENST00000539244 NDUFAF6Q330K2 333 aa11.98□□□□□ -0.49
SS18-204ENST00000539244 ELOA3BQ3SY89 546 aa11.98□□□□□ -0.49
SS18-204ENST00000539244 FAM153CQ494X1 144 aa11.98□□□□□ -0.49
SS18-204ENST00000539244 GALNTL6Q49A17 601 aa11.98□□□□□ -0.49
SS18-204ENST00000539244 ABLIM2Q6H8Q1 611 aa11.98□□□□□ -0.49
SS18-204ENST00000539244 GALNT5Q7Z7M9 940 aa11.98□□□□□ -0.49
SS18-204ENST00000539244 C10orf107Q8IVU9 208 aa11.98□□□□□ -0.49
SS18-204ENST00000539244 ZNF433Q8N7K0 673 aaPredicted RBP11.98□□□□□ -0.49
SS18-204ENST00000539244 ATP6V1C2Q8NEY4 427 aa11.98□□□□□ -0.49
SS18-204ENST00000539244 ELOA3Q8NG57 546 aa11.98□□□□□ -0.49
SS18-204ENST00000539244 OR7A2PQ8NGA2 310 aa11.98□□□□□ -0.49
SS18-204ENST00000539244 ST8SIA1Q92185 356 aa11.98□□□□□ -0.49
SS18-204ENST00000539244 ARL8AQ96BM9 186 aa11.98□□□□□ -0.49
SS18-204ENST00000539244 MOAP1Q96BY2 351 aa11.98□□□□□ -0.49
SS18-204ENST00000539244 ADAD1Q96M93 576 aaKnown RBP11.98□□□□□ -0.49
SS18-204ENST00000539244 NMUR2Q9GZQ4 415 aa11.98□□□□□ -0.49
SS18-204ENST00000539244 C12orf65Q9H3J6 166 aaKnown RBP11.98□□□□□ -0.49
SS18-204ENST00000539244 PPCSQ9HAB8 311 aa11.98□□□□□ -0.49
SS18-204ENST00000539244 CBLN4Q9NTU7 201 aa11.98□□□□□ -0.49
SS18-204ENST00000539244 CDC42EP3Q9UKI2 254 aa11.98□□□□□ -0.49
SS18-204ENST00000539244 FAF1Q9UNN5 650 aaPredicted RBP11.98□□□□□ -0.49
SS18-204ENST00000539244 MGAT4BQ9UQ53 548 aa11.98□□□□□ -0.49
SS18-204ENST00000539244 FIS1Q9Y3D6 152 aa11.98□□□□□ -0.49
SS18-204ENST00000539244 COPEO14579 308 aa11.97□□□□□ -0.49
SS18-204ENST00000539244 SSX4O60224 188 aa11.97□□□□□ -0.49
SS18-204ENST00000539244 GPRIN2O60269 458 aa11.97□□□□□ -0.49
SS18-204ENST00000539244 TRIM13O60858 407 aa11.97□□□□□ -0.49
SS18-204ENST00000539244 LYPLA1O75608 230 aaPredicted RBP11.97□□□□□ -0.49
SS18-204ENST00000539244 UBL4AP11441 157 aa11.97□□□□□ -0.49
SS18-204ENST00000539244 PTAFRP25105 342 aa11.97□□□□□ -0.49
SS18-204ENST00000539244 MAPK1P28482 360 aa11.97□□□□□ -0.49
SS18-204ENST00000539244 TTKP33981 857 aa11.97□□□□□ -0.49
SS18-204ENST00000539244 RNF144AP50876 292 aaPredicted RBP11.97□□□□□ -0.49
SS18-204ENST00000539244 NUDT6P53370 316 aa11.97□□□□□ -0.49
SS18-204ENST00000539244 VLDLRP98155 873 aa11.97□□□□□ -0.49
SS18-204ENST00000539244 LOXL1Q08397 574 aaPredicted RBP11.97□□□□□ -0.49
SS18-204ENST00000539244 SKP2Q13309 424 aa11.97□□□□□ -0.49
SS18-204ENST00000539244 TP53BP2Q13625 1128 aa11.97□□□□□ -0.49
SS18-204ENST00000539244 TMEM249Q2WGJ8 235 aa11.97□□□□□ -0.49
SS18-204ENST00000539244 LSM12Q3MHD2 195 aaKnown RBP11.97□□□□□ -0.49
SS18-204ENST00000539244 TIGD2Q4W5G0 525 aa11.97□□□□□ -0.49
SS18-204ENST00000539244 XKR7Q5GH72 579 aa11.97□□□□□ -0.49
SS18-204ENST00000539244 TMEM108Q6UXF1 575 aa11.97□□□□□ -0.49
SS18-204ENST00000539244 TMPPEQ6ZT21 453 aa11.97□□□□□ -0.49
SS18-204ENST00000539244 CCDC63Q8NA47 563 aa11.97□□□□□ -0.49
SS18-204ENST00000539244 TWIST2Q8WVJ9 160 aa11.97□□□□□ -0.49
SS18-204ENST00000539244 COQ8BQ96D53 544 aa11.97□□□□□ -0.49
SS18-204ENST00000539244 OR5B2Q96R09 309 aa11.97□□□□□ -0.49
SS18-204ENST00000539244 TNFRSF13CQ96RJ3 184 aa11.97□□□□□ -0.49
SS18-204ENST00000539244 SDF2Q99470 211 aa11.97□□□□□ -0.49
SS18-204ENST00000539244 DHRS9Q9BPW9 319 aa11.97□□□□□ -0.49
SS18-204ENST00000539244 CACNG6Q9BXT2 260 aa11.97□□□□□ -0.49
SS18-204ENST00000539244 LAT2Q9GZY6 243 aa11.97□□□□□ -0.49
SS18-204ENST00000539244 ATAD3AQ9NVI7 634 aa11.97□□□□□ -0.49
SS18-204ENST00000539244 FAM234BA2RU67 622 aa11.96□□□□□ -0.49
SS18-204ENST00000539244 SERINC4A6NH21 518 aa11.96□□□□□ -0.49
SS18-204ENST00000539244 TMEM233B4DJY2 109 aa11.96□□□□□ -0.49
SS18-204ENST00000539244 C9JVG2 144 aa11.96□□□□□ -0.49
SS18-204ENST00000539244 E7EQL1 145 aa11.96□□□□□ -0.49
SS18-204ENST00000539244 PIP5K1BO14986 540 aa11.96□□□□□ -0.49
SS18-204ENST00000539244 C6orf47O95873 294 aa11.96□□□□□ -0.49
SS18-204ENST00000539244 AK1P00568 194 aa11.96□□□□□ -0.49
SS18-204ENST00000539244 F12P00748 615 aaPredicted RBP11.96□□□□□ -0.49
SS18-204ENST00000539244 SLC25A16P16260 332 aa11.96□□□□□ -0.49
SS18-204ENST00000539244 KRT4P19013 534 aa11.96□□□□□ -0.49
SS18-204ENST00000539244 DIO1P49895 249 aa11.96□□□□□ -0.49
SS18-204ENST00000539244 SESN3P58005 492 aa11.96□□□□□ -0.49
SS18-204ENST00000539244 CSNK2A1P68400 391 aaPredicted RBP11.96□□□□□ -0.49
SS18-204ENST00000539244 ZNF141Q15928 474 aa11.96□□□□□ -0.49
SS18-204ENST00000539244 PDZK1Q5T2W1 519 aa11.96□□□□□ -0.49
SS18-204ENST00000539244 FBXW9Q5XUX1 488 aa11.96□□□□□ -0.49
SS18-204ENST00000539244 CLEC2AQ6UVW9 174 aa11.96□□□□□ -0.49
SS18-204ENST00000539244 MTDHQ86UE4 582 aaKnown RBP11.96□□□□□ -0.49
SS18-204ENST00000539244 DDIASQ8IXT1 998 aa11.96□□□□□ -0.49
SS18-204ENST00000539244 ZNF100Q8IYN0 542 aa11.96□□□□□ -0.49
SS18-204ENST00000539244 TMCO5AQ8N6Q1 288 aa11.96□□□□□ -0.49
SS18-204ENST00000539244 ZNF614Q8N883 585 aa11.96□□□□□ -0.49
SS18-204ENST00000539244 RFWD2Q8NHY2 731 aa11.96□□□□□ -0.49
SS18-204ENST00000539244 SLC25A43Q8WUT9 341 aaPredicted RBP11.96□□□□□ -0.49
SS18-204ENST00000539244 TMEM234Q8WY98 164 aa11.96□□□□□ -0.49
SS18-204ENST00000539244 ZNF775Q96BV0 537 aaPredicted RBP11.96□□□□□ -0.49
SS18-204ENST00000539244 PPP3R2Q96LZ3 170 aa11.96□□□□□ -0.49
SS18-204ENST00000539244 OR7D2Q96RA2 312 aa11.96□□□□□ -0.49
SS18-204ENST00000539244 THUMPD3Q9BV44 507 aaKnown RBP11.96□□□□□ -0.49
SS18-204ENST00000539244 QRSL1Q9H0R6 528 aaKnown RBP11.96□□□□□ -0.49
SS18-204ENST00000539244 EMC3Q9P0I2 261 aa11.96□□□□□ -0.49
SS18-204ENST00000539244 TRAF6Q9Y4K3 522 aa11.96□□□□□ -0.49
SS18-204ENST00000539244 SLC25A15Q9Y619 301 aa11.96□□□□□ -0.49
SS18-204ENST00000539244 SVEP1Q4LDE5 3571 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms