RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 HMGN3Q15651 99 aa6.22□□□□□ -1.41
USP28-207ENST00000538475 EIF2S3LQ2VIR3 472 aaKnown RBP6.22□□□□□ -1.41
USP28-207ENST00000538475 FAM74A3Q4VXF1 159 aa6.22□□□□□ -1.41
USP28-207ENST00000538475 ACSM5Q6NUN0 579 aa6.22□□□□□ -1.41
USP28-207ENST00000538475 FUT10Q6P4F1 479 aa6.22□□□□□ -1.41
USP28-207ENST00000538475 FIP1L1Q6UN15 594 aaKnown RBP6.22□□□□□ -1.41
USP28-207ENST00000538475 DNM1P46Q6ZS02 220 aa6.22□□□□□ -1.41
USP28-207ENST00000538475 KRT77Q7Z794 578 aa6.22□□□□□ -1.41
USP28-207ENST00000538475 SPATA2LQ8IUW3 424 aaPredicted RBP6.22□□□□□ -1.41
USP28-207ENST00000538475 LILRB2Q8N423 598 aa6.22□□□□□ -1.41
USP28-207ENST00000538475 KCNRGQ8N5I3 272 aa6.22□□□□□ -1.41
USP28-207ENST00000538475 C15orf54Q8N8G6 183 aa6.22□□□□□ -1.41
USP28-207ENST00000538475 DNAAF1Q8NEP3 725 aa6.22□□□□□ -1.41
USP28-207ENST00000538475 BEST4Q8NFU0 473 aa6.22□□□□□ -1.41
USP28-207ENST00000538475 OR4F15Q8NGB8 312 aa6.22□□□□□ -1.41
USP28-207ENST00000538475 OR10K1Q8NGX5 313 aa6.22□□□□□ -1.41
USP28-207ENST00000538475 BRIX1Q8TDN6 353 aaKnown RBP6.22□□□□□ -1.41
USP28-207ENST00000538475 OR5P2Q8WZ92 322 aa6.22□□□□□ -1.41
USP28-207ENST00000538475 ST8SIA2Q92186 375 aa6.22□□□□□ -1.41
USP28-207ENST00000538475 MAL2Q969L2 176 aa6.22□□□□□ -1.41
USP28-207ENST00000538475 UBE2E3Q969T4 207 aa6.22□□□□□ -1.41
USP28-207ENST00000538475 PPCDCQ96CD2 204 aa6.22□□□□□ -1.41
USP28-207ENST00000538475 MRPL48Q96GC5 212 aaKnown RBP6.22□□□□□ -1.41
USP28-207ENST00000538475 PRRC1Q96M27 445 aa6.22□□□□□ -1.41
USP28-207ENST00000538475 TMED9Q9BVK6 235 aa6.22□□□□□ -1.41
USP28-207ENST00000538475 FNDC11Q9BVV2 318 aa6.22□□□□□ -1.41
USP28-207ENST00000538475 SEC11CQ9BY50 192 aa6.22□□□□□ -1.41
USP28-207ENST00000538475 MS4A7Q9GZW8 240 aaPredicted RBP6.22□□□□□ -1.41
USP28-207ENST00000538475 OPA3Q9H6K4 179 aa6.22□□□□□ -1.41
USP28-207ENST00000538475 TUBA4BQ9H853 241 aa6.22□□□□□ -1.41
USP28-207ENST00000538475 TBC1D17Q9HA65 648 aa6.22□□□□□ -1.41
USP28-207ENST00000538475 BARX1Q9HBU1 254 aaPredicted RBP6.22□□□□□ -1.41
USP28-207ENST00000538475 NOX3Q9HBY0 568 aa6.22□□□□□ -1.41
USP28-207ENST00000538475 BCL2L10Q9HD36 194 aa6.22□□□□□ -1.41
USP28-207ENST00000538475 HRASLSQ9HDD0 168 aa6.22□□□□□ -1.41
USP28-207ENST00000538475 KRCC1Q9NPI7 259 aaPredicted RBP6.22□□□□□ -1.41
USP28-207ENST00000538475 ACSS1Q9NUB1 689 aaPredicted RBP6.22□□□□□ -1.41
USP28-207ENST00000538475 C14orf105Q9NVL8 296 aa6.22□□□□□ -1.41
USP28-207ENST00000538475 KLHL9Q9P2J3 617 aa6.22□□□□□ -1.41
USP28-207ENST00000538475 PIN4Q9Y237 131 aaKnown RBP6.22□□□□□ -1.41
USP28-207ENST00000538475 PLEKHA6Q9Y2H5 1048 aa6.22□□□□□ -1.41
USP28-207ENST00000538475 YARS2Q9Y2Z4 477 aaKnown RBP6.22□□□□□ -1.41
USP28-207ENST00000538475 PLXND1Q9Y4D7 1925 aa6.22□□□□□ -1.41
USP28-207ENST00000538475 PLXNA2O75051 1894 aa6.22□□□□□ -1.41
USP28-207ENST00000538475 IGLV3-16A0A075B6K0 115 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 C17orf113A0A1B0GUU1 675 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 A0A1W2PQH9 124 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 SHISA3A0PJX4 238 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 C2orf78A6NCI8 922 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 ARGFXA6NJG6 315 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 SLC9B1P1A6NJY1 282 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 ACOD1A6NK06 481 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 LINC00587B1AMM8 73 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 ACOT7O00154 380 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 LGALS8O00214 317 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 PRRG1O14668 218 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 EIF4E2O60573 245 aaKnown RBP6.21□□□□□ -1.42
USP28-207ENST00000538475 DNAJB6O75190 326 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 KDM4BO94953 1096 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 PAK4O96013 591 aaPredicted RBP6.21□□□□□ -1.42
USP28-207ENST00000538475 IGHV2-70P01814 119 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 OPN1SWP03999 348 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 HRGP04196 525 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 ACAA1P09110 424 aaPredicted RBP6.21□□□□□ -1.42
USP28-207ENST00000538475 ZDHHC11BP0C7U3 371 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 PIRTP0C851 137 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 SLC2A1P11166 492 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 SRFP11831 508 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 EPCAMP16422 314 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 ZNF3P17036 446 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 TACR2P21452 398 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 PAICSP22234 425 aaKnown RBP6.21□□□□□ -1.42
USP28-207ENST00000538475 MMP11P24347 488 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 ACADLP28330 430 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 PPP2R1BP30154 601 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 ACVRL1P37023 503 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 HSD17B2P37059 387 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 PGDP52209 483 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 HCCSP53701 268 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 CAV3P56539 151 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 ERVK-25P63136 954 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 ACTC1P68032 377 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 ACTA1P68133 377 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 RAE1P78406 368 aaKnown RBP6.21□□□□□ -1.42
USP28-207ENST00000538475 FAM189BP81408 668 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 NAAAQ02083 359 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 BCL2L1Q07817 233 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 DSC1Q08554 894 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 GANABQ14697 944 aaKnown RBP6.21□□□□□ -1.42
USP28-207ENST00000538475 MLC1Q15049 377 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 RBMS2Q15434 407 aaKnown RBP6.21□□□□□ -1.42
USP28-207ENST00000538475 SMAD2Q15796 467 aaKnown RBP6.21□□□□□ -1.42
USP28-207ENST00000538475 TAF12Q16514 161 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 UPP1Q16831 310 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 ZSWIM7Q19AV6 140 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 PAN3Q58A45 887 aaKnown RBP6.21□□□□□ -1.42
USP28-207ENST00000538475 LDLRAD1Q5T700 205 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 VASNQ6EMK4 673 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 FAM71E1Q6IPT2 247 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 RPL13AP3Q6NVV1 102 aa6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms