RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, human

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF1-208	ENST00000532560	DNAJB12	Q9NXW2	375 aa	Known RBP	13.54	□□□□□ -0.24
CPSF1-208	ENST00000532560	ZNF629	Q9UEG4	869 aa	Predicted RBP	13.54	□□□□□ -0.24
CPSF1-208	ENST00000532560	ZNF175	Q9Y473	711 aa		13.54	□□□□□ -0.24
CPSF1-208	ENST00000532560		A0A0G2JPF8	293 aa		13.53	□□□□□ -0.24
CPSF1-208	ENST00000532560	SLC22A20	A6NK97	555 aa		13.53	□□□□□ -0.24
CPSF1-208	ENST00000532560	BBIP1	A8MTZ0	92 aa		13.53	□□□□□ -0.24
CPSF1-208	ENST00000532560	EVPLL	A8MZ36	301 aa		13.53	□□□□□ -0.24
CPSF1-208	ENST00000532560	HNRNPCL2	B2RXH8	293 aa		13.53	□□□□□ -0.24
CPSF1-208	ENST00000532560	HNRNPCL3	B7ZW38	293 aa		13.53	□□□□□ -0.24
CPSF1-208	ENST00000532560	DVL2	O14641	736 aa		13.53	□□□□□ -0.24
CPSF1-208	ENST00000532560	RCBTB2	O95199	551 aa		13.53	□□□□□ -0.24
CPSF1-208	ENST00000532560	IL18BP	O95998	194 aa		13.53	□□□□□ -0.24
CPSF1-208	ENST00000532560	THBS1	P07996	1170 aa		13.53	□□□□□ -0.24
CPSF1-208	ENST00000532560	HNRNPCL4	P0DMR1	293 aa		13.53	□□□□□ -0.24
CPSF1-208	ENST00000532560	IL7R	P16871	459 aa		13.53	□□□□□ -0.24
CPSF1-208	ENST00000532560	SLC6A8	P48029	635 aa		13.53	□□□□□ -0.24
CPSF1-208	ENST00000532560	SELENBP1	Q13228	472 aa		13.53	□□□□□ -0.24
CPSF1-208	ENST00000532560	NFYC	Q13952	458 aa		13.53	□□□□□ -0.24
CPSF1-208	ENST00000532560	KRT72	Q14CN4	511 aa		13.53	□□□□□ -0.24
CPSF1-208	ENST00000532560	CTU2	Q2VPK5	515 aa	Known RBP	13.53	□□□□□ -0.24
CPSF1-208	ENST00000532560	TRMT5	Q32P41	509 aa	Known RBP	13.53	□□□□□ -0.24
CPSF1-208	ENST00000532560	LIN52	Q52LA3	116 aa		13.53	□□□□□ -0.24
CPSF1-208	ENST00000532560	RUNDC3A	Q59EK9	446 aa		13.53	□□□□□ -0.24
CPSF1-208	ENST00000532560	RPS26P11	Q5JNZ5	115 aa	Predicted RBP	13.53	□□□□□ -0.24
CPSF1-208	ENST00000532560	ESPNL	Q6ZVH7	1005 aa		13.53	□□□□□ -0.24
CPSF1-208	ENST00000532560	LIX1L	Q8IVB5	337 aa		13.53	□□□□□ -0.24
CPSF1-208	ENST00000532560	C10orf111	Q8N326	155 aa		13.53	□□□□□ -0.24
CPSF1-208	ENST00000532560	ACBD4	Q8NC06	268 aa		13.53	□□□□□ -0.24
CPSF1-208	ENST00000532560	TMEM234	Q8WY98	164 aa		13.53	□□□□□ -0.24
CPSF1-208	ENST00000532560	CNOT9	Q92600	299 aa	Known RBP	13.53	□□□□□ -0.24
CPSF1-208	ENST00000532560	ZNF524	Q96C55	264 aa		13.53	□□□□□ -0.24
CPSF1-208	ENST00000532560	PINK1	Q9BXM7	581 aa		13.53	□□□□□ -0.24
CPSF1-208	ENST00000532560	TMEM38A	Q9H6F2	299 aa		13.53	□□□□□ -0.24
CPSF1-208	ENST00000532560	KCNJ16	Q9NPI9	418 aa		13.53	□□□□□ -0.24
CPSF1-208	ENST00000532560	PAQR5	Q9NXK6	330 aa	Predicted RBP	13.53	□□□□□ -0.24
CPSF1-208	ENST00000532560	NKX2-6	A6NCS4	301 aa		13.52	□□□□□ -0.25
CPSF1-208	ENST00000532560	GJE1	A6NN92	205 aa		13.52	□□□□□ -0.25
CPSF1-208	ENST00000532560	C5orf58	C9J3I9	102 aa		13.52	□□□□□ -0.25
CPSF1-208	ENST00000532560	C19orf84	I3L1E1	186 aa		13.52	□□□□□ -0.25
CPSF1-208	ENST00000532560	FAAH	O00519	579 aa		13.52	□□□□□ -0.25
CPSF1-208	ENST00000532560	FBP2	O00757	339 aa		13.52	□□□□□ -0.25
CPSF1-208	ENST00000532560	EIF1AY	O14602	144 aa	Known RBP	13.52	□□□□□ -0.25
CPSF1-208	ENST00000532560	ADAMDEC1	O15204	470 aa		13.52	□□□□□ -0.25
CPSF1-208	ENST00000532560	TGM6	O95932	706 aa		13.52	□□□□□ -0.25
CPSF1-208	ENST00000532560	ETS2	P15036	469 aa		13.52	□□□□□ -0.25
CPSF1-208	ENST00000532560	IL11	P20809	199 aa		13.52	□□□□□ -0.25
CPSF1-208	ENST00000532560	CTSS	P25774	331 aa		13.52	□□□□□ -0.25
CPSF1-208	ENST00000532560	OPRM1	P35372	400 aa		13.52	□□□□□ -0.25
CPSF1-208	ENST00000532560	SESN3	P58005	492 aa		13.52	□□□□□ -0.25
CPSF1-208	ENST00000532560	ZSWIM7	Q19AV6	140 aa		13.52	□□□□□ -0.25
CPSF1-208	ENST00000532560	MRPL2	Q5T653	305 aa	Known RBP	13.52	□□□□□ -0.25
CPSF1-208	ENST00000532560	RNF220	Q5VTB9	566 aa		13.52	□□□□□ -0.25
CPSF1-208	ENST00000532560	POMZP3	Q6PJE2	187 aa		13.52	□□□□□ -0.25
CPSF1-208	ENST00000532560	ZNF836	Q6ZNA1	936 aa		13.52	□□□□□ -0.25
CPSF1-208	ENST00000532560	ZNF440	Q8IYI8	595 aa		13.52	□□□□□ -0.25
CPSF1-208	ENST00000532560	RELL2	Q8NC24	303 aa	Predicted RBP	13.52	□□□□□ -0.25
CPSF1-208	ENST00000532560	OR52P1P	Q8NH57	321 aa		13.52	□□□□□ -0.25
CPSF1-208	ENST00000532560	OR10D3	Q8NH80	312 aa		13.52	□□□□□ -0.25
CPSF1-208	ENST00000532560	ZNF845	Q96IR2	970 aa	Predicted RBP	13.52	□□□□□ -0.25
CPSF1-208	ENST00000532560	KLHL15	Q96M94	604 aa		13.52	□□□□□ -0.25
CPSF1-208	ENST00000532560	SFXN3	Q9BWM7	321 aa		13.52	□□□□□ -0.25
CPSF1-208	ENST00000532560	UCK2	Q9BZX2	261 aa		13.52	□□□□□ -0.25
CPSF1-208	ENST00000532560	TMEM185B	Q9H7F4	350 aa		13.52	□□□□□ -0.25
CPSF1-208	ENST00000532560	CACYBP	Q9HB71	228 aa	Known RBP	13.52	□□□□□ -0.25
CPSF1-208	ENST00000532560	ACER3	Q9NUN7	267 aa		13.52	□□□□□ -0.25
CPSF1-208	ENST00000532560	ZNF443	Q9Y2A4	671 aa	Predicted RBP	13.52	□□□□□ -0.25
CPSF1-208	ENST00000532560	IFT52	Q9Y366	437 aa		13.52	□□□□□ -0.25
CPSF1-208	ENST00000532560	CDHR4	A6H8M9	788 aa		13.51	□□□□□ -0.25
CPSF1-208	ENST00000532560	EFNA2	O43921	213 aa		13.51	□□□□□ -0.25
CPSF1-208	ENST00000532560	ADAM11	O75078	769 aa		13.51	□□□□□ -0.25
CPSF1-208	ENST00000532560	PGM3	O95394	542 aa		13.51	□□□□□ -0.25
CPSF1-208	ENST00000532560	CRH	P06850	196 aa		13.51	□□□□□ -0.25
CPSF1-208	ENST00000532560	TMIGD3	P0DMS9	266 aa	Predicted RBP	13.51	□□□□□ -0.25
CPSF1-208	ENST00000532560	FCGR2A	P12318	317 aa		13.51	□□□□□ -0.25
CPSF1-208	ENST00000532560	IGFBP2	P18065	325 aa		13.51	□□□□□ -0.25
CPSF1-208	ENST00000532560	BMP5	P22003	454 aa		13.51	□□□□□ -0.25
CPSF1-208	ENST00000532560	SHC1	P29353	583 aa		13.51	□□□□□ -0.25
CPSF1-208	ENST00000532560	EIF1AX	P47813	144 aa	Known RBP	13.51	□□□□□ -0.25
CPSF1-208	ENST00000532560	EEF1A1	P68104	462 aa	Known RBP	13.51	□□□□□ -0.25
CPSF1-208	ENST00000532560	CDK6	Q00534	326 aa		13.51	□□□□□ -0.25
CPSF1-208	ENST00000532560	LARS2	Q15031	903 aa	Known RBP	13.51	□□□□□ -0.25
CPSF1-208	ENST00000532560	PON3	Q15166	354 aa		13.51	□□□□□ -0.25
CPSF1-208	ENST00000532560	PDSS1	Q5T2R2	415 aa		13.51	□□□□□ -0.25
CPSF1-208	ENST00000532560	SP5	Q6BEB4	398 aa	Predicted RBP	13.51	□□□□□ -0.25
CPSF1-208	ENST00000532560	ZNF787	Q6DD87	383 aa		13.51	□□□□□ -0.25
CPSF1-208	ENST00000532560	OR2A2	Q6IF42	318 aa		13.51	□□□□□ -0.25
CPSF1-208	ENST00000532560	REEP3	Q6NUK4	255 aa		13.51	□□□□□ -0.25
CPSF1-208	ENST00000532560	C3orf33	Q6P1S2	294 aa		13.51	□□□□□ -0.25
CPSF1-208	ENST00000532560	PLXDC2	Q6UX71	529 aa		13.51	□□□□□ -0.25
CPSF1-208	ENST00000532560	P4HA3	Q7Z4N8	544 aa		13.51	□□□□□ -0.25
CPSF1-208	ENST00000532560	VRK2	Q86Y07	508 aa		13.51	□□□□□ -0.25
CPSF1-208	ENST00000532560	LILRA2	Q8N149	483 aa		13.51	□□□□□ -0.25
CPSF1-208	ENST00000532560	OR2V1	Q8NHB1	315 aa		13.51	□□□□□ -0.25
CPSF1-208	ENST00000532560	NFKBID	Q8NI38	313 aa		13.51	□□□□□ -0.25
CPSF1-208	ENST00000532560	FNDC9	Q8TBE3	224 aa		13.51	□□□□□ -0.25
CPSF1-208	ENST00000532560	FIG4	Q92562	907 aa		13.51	□□□□□ -0.25
CPSF1-208	ENST00000532560	NPDC1	Q9NQX5	325 aa	Predicted RBP	13.51	□□□□□ -0.25
CPSF1-208	ENST00000532560		A0A0J9YW62	118 aa		13.5	□□□□□ -0.25
CPSF1-208	ENST00000532560	FXYD1	O00168	92 aa		13.5	□□□□□ -0.25
CPSF1-208	ENST00000532560	TNFSF11	O14788	317 aa		13.5	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 666 ms