RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 CCDC185Q8N715 623 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 ZNF781Q8N8C0 355 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 OR10J5Q8NHC4 309 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 NCOA7Q8NI08 942 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 DNAJA4Q8WW22 397 aaPredicted RBP3.03□□□□□ -1.92
CD44-217ENST00000525348 RASSF5Q8WWW0 418 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 PRCCQ92733 491 aaPredicted RBP3.03□□□□□ -1.92
CD44-217ENST00000525348 YIPF5Q969M3 257 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 PCDHB18PQ96TA0 734 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 PSMB7Q99436 277 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 GON7Q9BXV9 100 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 NAT10Q9H0A0 1025 aaKnown RBP3.03□□□□□ -1.92
CD44-217ENST00000525348 DDX47Q9H0S4 455 aaKnown RBP3.03□□□□□ -1.92
CD44-217ENST00000525348 OPN3Q9H1Y3 402 aaPredicted RBP3.03□□□□□ -1.92
CD44-217ENST00000525348 OR51V1Q9H2C8 321 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 ASB8Q9H765 288 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 MCCC2Q9HCC0 563 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP3.03□□□□□ -1.92
CD44-217ENST00000525348 C19orf12Q9NSK7 152 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 AGPAT5Q9NUQ2 364 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 RAB20Q9NX57 234 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 CMTM6Q9NX76 183 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 THUMPD1Q9NXG2 353 aaKnown RBP3.03□□□□□ -1.92
CD44-217ENST00000525348 COA4Q9NYJ1 87 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 CTSFQ9UBX1 484 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 ZNF346Q9UL40 294 aaKnown RBP3.03□□□□□ -1.92
CD44-217ENST00000525348 PLLPQ9Y342 182 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 DHRS7Q9Y394 339 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 PUS1Q9Y606 427 aaKnown RBP eCLIP3.03□□□□□ -1.92
CD44-217ENST00000525348 USH1CQ9Y6N9 552 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 PREX2Q70Z35 1606 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 SYCP2Q9BX26 1530 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 MED14O60244 1454 aa3.03□□□□□ -1.93
CD44-217ENST00000525348 MLH3Q9UHC1 1453 aa3.03□□□□□ -1.93
CD44-217ENST00000525348 PSME4Q14997 1843 aa3.03□□□□□ -1.93
CD44-217ENST00000525348 CDC42BPAQ5VT25 1732 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 UBR1Q8IWV7 1749 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 KDM5AP29375 1690 aaKnown RBP3.02□□□□□ -1.93
CD44-217ENST00000525348 SALL1Q9NSC2 1324 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 RNF103-CHMP3A0A140T963 221 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 IQCMA0A1B0GVH7 501 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 SYCE3A1L190 88 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 ZNF716A6NP11 495 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 C2orf74A8MZ97 194 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 NPIPA3F8WFD2 350 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 FOXE1O00358 373 aaPredicted RBP3.02□□□□□ -1.93
CD44-217ENST00000525348 CCRL2O00421 344 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 ANGPT2O15123 496 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 AKR7A2O43488 359 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 MED7O43513 233 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 OR6B1O95007 311 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 CCNB2O95067 398 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 MFN2O95140 757 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 SEMA4FO95754 770 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 LGI1O95970 557 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 PDGFBP01127 241 aaPredicted RBP3.02□□□□□ -1.93
CD44-217ENST00000525348 C9P02748 559 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 GP1BAP07359 652 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 FAM228BP0C875 321 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 ZNF735P0CB33 412 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 DBTP11182 482 aaKnown RBP3.02□□□□□ -1.93
CD44-217ENST00000525348 CCDC130P13994 396 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 TNNI3P19429 210 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 NCF2P19878 526 aaPredicted RBP3.02□□□□□ -1.93
CD44-217ENST00000525348 PTPN6P29350 595 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 CCND2P30279 289 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 TIA1P31483 386 aaKnown RBP eCLIP3.02□□□□□ -1.93
CD44-217ENST00000525348 PHBP35232 272 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 ATP5C1P36542 298 aaKnown RBP3.02□□□□□ -1.93
CD44-217ENST00000525348 HSPA9P38646 679 aaKnown RBP3.02□□□□□ -1.93
CD44-217ENST00000525348 MDH1P40925 334 aaKnown RBP3.02□□□□□ -1.93
CD44-217ENST00000525348 SLC1A3P43003 542 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 GPR4P46093 362 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 RAP1GDS1P52306 607 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 CRYBB1P53674 252 aaPredicted RBP3.02□□□□□ -1.93
CD44-217ENST00000525348 ACTBP60709 375 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 ACTR3P61158 418 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 ACTA2P62736 377 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 ACTG1P63261 375 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 ACTG2P63267 376 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 ACTC1P68032 377 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 ACTA1P68133 377 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 YWHAHQ04917 246 aaPredicted RBP3.02□□□□□ -1.93
CD44-217ENST00000525348 SLC3A1Q07837 685 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 PIGHQ14442 188 aaPredicted RBP3.02□□□□□ -1.93
CD44-217ENST00000525348 PDK2Q15119 407 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 DUSP7Q16829 419 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 TPD52L1Q16890 204 aaPredicted RBP3.02□□□□□ -1.93
CD44-217ENST00000525348 TYSND1Q2T9J0 566 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 ACTBL2Q562R1 376 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 PRAMEF20Q5VT98 475 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 AGAP7PQ5VUJ5 663 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 SLX4IPQ5VYV7 408 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 TXNRD3NBQ6F5E7 133 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 NIPAL1Q6NVV3 410 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 C3orf33Q6P1S2 294 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 DHRS4L2Q6PKH6 230 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 NIPA1Q7RTP0 329 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 BHLHA15Q7RTS1 189 aaPredicted RBP3.02□□□□□ -1.93
CD44-217ENST00000525348 EFL1Q7Z2Z2 1120 aaKnown RBP3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms