RNA–Protein interactions for RNA: ENST00000522353.2

PCDHA3-201, Transcript of protocadherin alpha 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA3, Length 5,260 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3-201ENST00000522353 PTGS2P35354 604 aa15.18■□□□□ 0.02
PCDHA3-201ENST00000522353 SLC5A12Q1EHB4 618 aa15.18■□□□□ 0.02
PCDHA3-201ENST00000522353 WDR53Q7Z5U6 358 aaPredicted RBP15.18■□□□□ 0.02
PCDHA3-201ENST00000522353 DHRS4Q9BTZ2 278 aa15.18■□□□□ 0.02
PCDHA3-201ENST00000522353 TP63Q9H3D4 680 aaPredicted RBP15.18■□□□□ 0.02
PCDHA3-201ENST00000522353 PRDM9Q9NQV7 894 aa15.18■□□□□ 0.02
PCDHA3-201ENST00000522353 DCDC2BA2VCK2 349 aa15.18■□□□□ 0.02
PCDHA3-201ENST00000522353 GABBR2O75899 941 aa15.18■□□□□ 0.02
PCDHA3-201ENST00000522353 MAFAQ8NHW3 353 aaPredicted RBP15.18■□□□□ 0.02
PCDHA3-201ENST00000522353 UBTD2Q8WUN7 234 aa15.18■□□□□ 0.02
PCDHA3-201ENST00000522353 C16orf58Q96GQ5 468 aa15.18■□□□□ 0.02
PCDHA3-201ENST00000522353 EGLN2Q96KS0 407 aa15.18■□□□□ 0.02
PCDHA3-201ENST00000522353 IP6K3Q96PC2 410 aa15.18■□□□□ 0.02
PCDHA3-201ENST00000522353 SORT1Q99523 831 aa15.18■□□□□ 0.02
PCDHA3-201ENST00000522353 PLEKHJ1Q9NW61 149 aa15.18■□□□□ 0.02
PCDHA3-201ENST00000522353 PCP4L1A6NKN8 68 aa15.17■□□□□ 0.02
PCDHA3-201ENST00000522353 SHISA7A6NL88 538 aa15.17■□□□□ 0.02
PCDHA3-201ENST00000522353 CTNSO60931 367 aa15.17■□□□□ 0.02
PCDHA3-201ENST00000522353 CDK2P24941 298 aa15.17■□□□□ 0.02
PCDHA3-201ENST00000522353 CCL11P51671 97 aa15.17■□□□□ 0.02
PCDHA3-201ENST00000522353 RBM39Q14498 530 aaKnown RBP15.17■□□□□ 0.02
PCDHA3-201ENST00000522353 BEST3Q8N1M1 668 aa15.17■□□□□ 0.02
PCDHA3-201ENST00000522353 CD300LFQ8TDQ1 290 aa15.17■□□□□ 0.02
PCDHA3-201ENST00000522353 DUSP19Q8WTR2 217 aa15.17■□□□□ 0.02
PCDHA3-201ENST00000522353 PIGQQ9BRB3 760 aa15.17■□□□□ 0.02
PCDHA3-201ENST00000522353 ZDHHC5Q9C0B5 715 aa15.17■□□□□ 0.02
PCDHA3-201ENST00000522353 GORASP2Q9H8Y8 452 aa15.17■□□□□ 0.02
PCDHA3-201ENST00000522353 SLC35E2P0CK97 266 aa15.17■□□□□ 0.02
PCDHA3-201ENST00000522353 ATP1B3P54709 279 aa15.17■□□□□ 0.02
PCDHA3-201ENST00000522353 HBA1P69905 142 aa15.17■□□□□ 0.02
PCDHA3-201ENST00000522353 NKAIN2Q5VXU1 208 aa15.17■□□□□ 0.02
PCDHA3-201ENST00000522353 OR11L1Q8NGX0 322 aa15.17■□□□□ 0.02
PCDHA3-201ENST00000522353 ZNF285Q96NJ3 590 aa15.17■□□□□ 0.02
PCDHA3-201ENST00000522353 OR51B6Q9H340 312 aa15.17■□□□□ 0.02
PCDHA3-201ENST00000522353 KIR3DX1Q9H7L2 352 aa15.17■□□□□ 0.02
PCDHA3-201ENST00000522353 ZNF223Q9UK11 482 aaPredicted RBP15.17■□□□□ 0.02
PCDHA3-201ENST00000522353 NARSO43776 548 aaKnown RBP15.17■□□□□ 0.02
PCDHA3-201ENST00000522353 NUDT21O43809 227 aaKnown RBP15.17■□□□□ 0.02
PCDHA3-201ENST00000522353 AMY2AP04746 511 aa15.17■□□□□ 0.02
PCDHA3-201ENST00000522353 ITGB2P05107 769 aa15.17■□□□□ 0.02
PCDHA3-201ENST00000522353 PBX2P40425 430 aa15.17■□□□□ 0.02
PCDHA3-201ENST00000522353 CYB561P49447 251 aa15.17■□□□□ 0.02
PCDHA3-201ENST00000522353 HOXC5Q00444 222 aa15.17■□□□□ 0.02
PCDHA3-201ENST00000522353 GPR50Q13585 617 aa15.17■□□□□ 0.02
PCDHA3-201ENST00000522353 SYPL1Q16563 259 aa15.17■□□□□ 0.02
PCDHA3-201ENST00000522353 MRPL2Q5T653 305 aaKnown RBP15.17■□□□□ 0.02
PCDHA3-201ENST00000522353 KCTD11Q693B1 232 aa15.17■□□□□ 0.02
PCDHA3-201ENST00000522353 RFLNAQ6ZTI6 216 aa15.17■□□□□ 0.02
PCDHA3-201ENST00000522353 VRK2Q86Y07 508 aa15.17■□□□□ 0.02
PCDHA3-201ENST00000522353 SPIN2AQ99865 258 aa15.17■□□□□ 0.02
PCDHA3-201ENST00000522353 VRK1Q99986 396 aaPredicted RBP15.17■□□□□ 0.02
PCDHA3-201ENST00000522353 SPIN2BQ9BPZ2 258 aa15.17■□□□□ 0.02
PCDHA3-201ENST00000522353 MS4A8Q9BY19 250 aa15.17■□□□□ 0.02
PCDHA3-201ENST00000522353 RGPD5Q99666 1765 aa15.17■□□□□ 0.02
PCDHA3-201ENST00000522353 EIF1BO60739 113 aaKnown RBP15.17■□□□□ 0.02
PCDHA3-201ENST00000522353 ARAFP10398 606 aa15.17■□□□□ 0.02
PCDHA3-201ENST00000522353 ADH6P28332 368 aa15.17■□□□□ 0.02
PCDHA3-201ENST00000522353 RPS5P46782 204 aaKnown RBP15.17■□□□□ 0.02
PCDHA3-201ENST00000522353 PIP5KL1Q5T9C9 394 aa15.17■□□□□ 0.02
PCDHA3-201ENST00000522353 RNF113BQ8IZP6 322 aaKnown RBP15.17■□□□□ 0.02
PCDHA3-201ENST00000522353 SPEM1Q8N4L4 309 aa15.17■□□□□ 0.02
PCDHA3-201ENST00000522353 GDPD1Q8N9F7 314 aa15.17■□□□□ 0.02
PCDHA3-201ENST00000522353 SLC37A2Q8TED4 501 aa15.17■□□□□ 0.02
PCDHA3-201ENST00000522353 ALOX12BO75342 701 aa15.16■□□□□ 0.02
PCDHA3-201ENST00000522353 IFNA1P01562 189 aa15.16■□□□□ 0.02
PCDHA3-201ENST00000522353 CCR5P51681 352 aa15.16■□□□□ 0.02
PCDHA3-201ENST00000522353 ADARB1P78563 741 aaKnown RBP15.16■□□□□ 0.02
PCDHA3-201ENST00000522353 RAB40BQ12829 278 aa15.16■□□□□ 0.02
PCDHA3-201ENST00000522353 OR7G1Q8NGA0 311 aa15.16■□□□□ 0.02
PCDHA3-201ENST00000522353 ASB17Q8WXJ9 295 aa15.16■□□□□ 0.02
PCDHA3-201ENST00000522353 FOXRED1Q96CU9 486 aaPredicted RBP15.16■□□□□ 0.02
PCDHA3-201ENST00000522353 UBXN10Q96LJ8 280 aa15.16■□□□□ 0.02
PCDHA3-201ENST00000522353 SLC6A17Q9H1V8 727 aa15.16■□□□□ 0.02
PCDHA3-201ENST00000522353 C6orf106Q9H6K1 298 aaPredicted RBP15.16■□□□□ 0.02
PCDHA3-201ENST00000522353 UBQLN2Q9UHD9 624 aa15.16■□□□□ 0.02
PCDHA3-201ENST00000522353 EDARQ9UNE0 448 aa15.16■□□□□ 0.02
PCDHA3-201ENST00000522353 FAM230AA0A1W2PPH8 454 aa15.16■□□□□ 0.02
PCDHA3-201ENST00000522353 CYB5BO43169 146 aa15.16■□□□□ 0.02
PCDHA3-201ENST00000522353 RGS6P49758 472 aa15.16■□□□□ 0.02
PCDHA3-201ENST00000522353 MS4A2Q01362 244 aa15.16■□□□□ 0.02
PCDHA3-201ENST00000522353 EIF2S3LQ2VIR3 472 aaKnown RBP15.16■□□□□ 0.02
PCDHA3-201ENST00000522353 CCBE1Q6UXH8 406 aaPredicted RBP15.16■□□□□ 0.02
PCDHA3-201ENST00000522353 GSG1LQ6UXU4 331 aa15.16■□□□□ 0.02
PCDHA3-201ENST00000522353 FAM160A2Q8N612 972 aaPredicted RBP15.16■□□□□ 0.02
PCDHA3-201ENST00000522353 L3MBTL4Q8NA19 623 aa15.16■□□□□ 0.02
PCDHA3-201ENST00000522353 OR5W2Q8NH69 310 aa15.16■□□□□ 0.02
PCDHA3-201ENST00000522353 SAP130Q9H0E3 1048 aa15.16■□□□□ 0.02
PCDHA3-201ENST00000522353 INPP5EQ9NRR6 644 aa15.16■□□□□ 0.02
PCDHA3-201ENST00000522353 NOSIPQ9Y314 301 aaKnown RBP15.16■□□□□ 0.02
PCDHA3-201ENST00000522353 SERINC4A6NH21 518 aa15.16■□□□□ 0.02
PCDHA3-201ENST00000522353 PPP5CP53041 499 aa15.16■□□□□ 0.02
PCDHA3-201ENST00000522353 OR1D5P58170 312 aa15.16■□□□□ 0.02
PCDHA3-201ENST00000522353 AFMIDQ63HM1 303 aa15.16■□□□□ 0.02
PCDHA3-201ENST00000522353 ZNF322Q6U7Q0 402 aaPredicted RBP15.16■□□□□ 0.02
PCDHA3-201ENST00000522353 CBLL1Q75N03 491 aa15.16■□□□□ 0.02
PCDHA3-201ENST00000522353 OR1E3Q8WZA6 343 aa15.16■□□□□ 0.02
PCDHA3-201ENST00000522353 CTRCQ99895 268 aa15.16■□□□□ 0.02
PCDHA3-201ENST00000522353 VN1R3Q9BXE9 311 aa15.16■□□□□ 0.02
PCDHA3-201ENST00000522353 NXF5Q9H1B4 397 aaKnown RBP15.16■□□□□ 0.02
PCDHA3-201ENST00000522353 TVP23AA6NH52 213 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms