RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 EXO5Q9H790 373 aa13.89□□□□□ -0.19
LSM1-203ENST00000520755 PTGES2Q9H7Z7 377 aa13.89□□□□□ -0.19
LSM1-203ENST00000520755 HHATLQ9HCP6 504 aa13.89□□□□□ -0.19
LSM1-203ENST00000520755 CCM2LQ9NUG4 571 aaPredicted RBP13.89□□□□□ -0.19
LSM1-203ENST00000520755 QPCTLQ9NXS2 382 aa13.89□□□□□ -0.19
LSM1-203ENST00000520755 KLHL28Q9NXS3 571 aa13.89□□□□□ -0.19
LSM1-203ENST00000520755 NDUFAF4Q9P032 175 aa13.89□□□□□ -0.19
LSM1-203ENST00000520755 TESQ9UGI8 421 aaKnown RBP13.89□□□□□ -0.19
LSM1-203ENST00000520755 SLC13A4Q9UKG4 626 aa13.89□□□□□ -0.19
LSM1-203ENST00000520755 SLC9A8Q9Y2E8 581 aa13.89□□□□□ -0.19
LSM1-203ENST00000520755 CFAP46Q8IYW2 2715 aa13.89□□□□□ -0.19
LSM1-203ENST00000520755 ZNF407Q9C0G0 2248 aa13.88□□□□□ -0.19
LSM1-203ENST00000520755 PYCARD-AS1I3L0S3 204 aa13.88□□□□□ -0.19
LSM1-203ENST00000520755 FAAHO00519 579 aa13.88□□□□□ -0.19
LSM1-203ENST00000520755 FFAR1O14842 300 aa13.88□□□□□ -0.19
LSM1-203ENST00000520755 ZNHIT1O43257 154 aa13.88□□□□□ -0.19
LSM1-203ENST00000520755 FKBP6O75344 327 aa13.88□□□□□ -0.19
LSM1-203ENST00000520755 DIRAS1O95057 198 aa13.88□□□□□ -0.19
LSM1-203ENST00000520755 THY1P04216 161 aa13.88□□□□□ -0.19
LSM1-203ENST00000520755 IFNW1P05000 195 aa13.88□□□□□ -0.19
LSM1-203ENST00000520755 HPNP05981 417 aa13.88□□□□□ -0.19
LSM1-203ENST00000520755 RAP2AP10114 183 aa13.88□□□□□ -0.19
LSM1-203ENST00000520755 DPP4P27487 766 aa13.88□□□□□ -0.19
LSM1-203ENST00000520755 SLC7A1P30825 629 aa13.88□□□□□ -0.19
LSM1-203ENST00000520755 RYKP34925 604 aa13.88□□□□□ -0.19
LSM1-203ENST00000520755 WIPI1Q5MNZ9 446 aaPredicted RBP13.88□□□□□ -0.19
LSM1-203ENST00000520755 ARSKQ6UWY0 536 aa13.88□□□□□ -0.19
LSM1-203ENST00000520755 DEF8Q6ZN54 512 aa13.88□□□□□ -0.19
LSM1-203ENST00000520755 ZNF550Q7Z398 422 aa13.88□□□□□ -0.19
LSM1-203ENST00000520755 YRDCQ86U90 279 aaKnown RBP13.88□□□□□ -0.19
LSM1-203ENST00000520755 ATCAYQ86WG3 371 aa13.88□□□□□ -0.19
LSM1-203ENST00000520755 ZDHHC21Q8IVQ6 265 aa13.88□□□□□ -0.19
LSM1-203ENST00000520755 ZNF440Q8IYI8 595 aa13.88□□□□□ -0.19
LSM1-203ENST00000520755 GHDCQ8N2G8 530 aa13.88□□□□□ -0.19
LSM1-203ENST00000520755 FAM83FQ8NEG4 500 aaPredicted RBP13.88□□□□□ -0.19
LSM1-203ENST00000520755 OR14L1PQ8NHC6 308 aa13.88□□□□□ -0.19
LSM1-203ENST00000520755 C1GALT1C1Q96EU7 318 aa13.88□□□□□ -0.19
LSM1-203ENST00000520755 DTNBP1Q96EV8 351 aa13.88□□□□□ -0.19
LSM1-203ENST00000520755 EVA1AQ9H8M9 152 aa13.88□□□□□ -0.19
LSM1-203ENST00000520755 IL1RAPQ9NPH3 570 aa13.88□□□□□ -0.19
LSM1-203ENST00000520755 CTPS2Q9NRF8 586 aa13.88□□□□□ -0.19
LSM1-203ENST00000520755 ACAD8Q9UKU7 415 aa13.88□□□□□ -0.19
LSM1-203ENST00000520755 A4GNTQ9UNA3 340 aa13.88□□□□□ -0.19
LSM1-203ENST00000520755 AURKCQ9UQB9 309 aa13.88□□□□□ -0.19
LSM1-203ENST00000520755 ENPP4Q9Y6X5 453 aa13.88□□□□□ -0.19
LSM1-203ENST00000520755 TRGV5A0A0B4J1U4 118 aa13.87□□□□□ -0.19
LSM1-203ENST00000520755 A0A1B0GTH9 108 aa13.87□□□□□ -0.19
LSM1-203ENST00000520755 CPSF4LA6NMK7 179 aaKnown RBP13.87□□□□□ -0.19
LSM1-203ENST00000520755 FMO6PO60774 539 aa13.87□□□□□ -0.19
LSM1-203ENST00000520755 KRT36O76013 467 aa13.87□□□□□ -0.19
LSM1-203ENST00000520755 LYPD3O95274 346 aa13.87□□□□□ -0.19
LSM1-203ENST00000520755 NUDT14O95848 222 aa13.87□□□□□ -0.19
LSM1-203ENST00000520755 FABP3P05413 133 aa13.87□□□□□ -0.19
LSM1-203ENST00000520755 LINGO3P0C6S8 592 aa13.87□□□□□ -0.19
LSM1-203ENST00000520755 MSX1P28360 303 aa13.87□□□□□ -0.19
LSM1-203ENST00000520755 SRD5A2P31213 254 aa13.87□□□□□ -0.19
LSM1-203ENST00000520755 YAP1P46937 504 aaKnown RBP13.87□□□□□ -0.19
LSM1-203ENST00000520755 DSCR4P56555 118 aaPredicted RBP13.87□□□□□ -0.19
LSM1-203ENST00000520755 FOXK1P85037 733 aa13.87□□□□□ -0.19
LSM1-203ENST00000520755 CHRNB3Q05901 458 aa13.87□□□□□ -0.19
LSM1-203ENST00000520755 MRPL49Q13405 166 aaKnown RBP13.87□□□□□ -0.19
LSM1-203ENST00000520755 CBFBQ13951 182 aa13.87□□□□□ -0.19
LSM1-203ENST00000520755 QPRTQ15274 297 aa13.87□□□□□ -0.19
LSM1-203ENST00000520755 PLPPR5Q32ZL2 321 aa13.87□□□□□ -0.19
LSM1-203ENST00000520755 FAM98BQ52LJ0 330 aaKnown RBP13.87□□□□□ -0.19
LSM1-203ENST00000520755 TRILQ7L0X0 811 aa13.87□□□□□ -0.19
LSM1-203ENST00000520755 PIWIL3Q7Z3Z3 882 aaKnown RBP13.87□□□□□ -0.19
LSM1-203ENST00000520755 ST6GALNAC3Q8NDV1 305 aa13.87□□□□□ -0.19
LSM1-203ENST00000520755 POP5Q969H6 163 aaKnown RBP13.87□□□□□ -0.19
LSM1-203ENST00000520755 ZNF300Q96RE9 604 aaPredicted RBP13.87□□□□□ -0.19
LSM1-203ENST00000520755 MCHR1Q99705 422 aa13.87□□□□□ -0.19
LSM1-203ENST00000520755 OR2B2Q9GZK3 357 aa13.87□□□□□ -0.19
LSM1-203ENST00000520755 MED17Q9NVC6 651 aa13.87□□□□□ -0.19
LSM1-203ENST00000520755 TAS2R10Q9NYW0 307 aa13.87□□□□□ -0.19
LSM1-203ENST00000520755 VDAC3Q9Y277 283 aa13.87□□□□□ -0.19
LSM1-203ENST00000520755 RPH3AQ9Y2J0 694 aaPredicted RBP13.87□□□□□ -0.19
LSM1-203ENST00000520755 RRP15Q9Y3B9 282 aaKnown RBP13.87□□□□□ -0.19
LSM1-203ENST00000520755 DNAJC13O75165 2243 aa13.87□□□□□ -0.19
LSM1-203ENST00000520755 GTF3C1Q12789 2109 aa13.87□□□□□ -0.19
LSM1-203ENST00000520755 A0A1B0GWA3 101 aa13.86□□□□□ -0.19
LSM1-203ENST00000520755 SHISA8B8ZZ34 492 aa13.86□□□□□ -0.19
LSM1-203ENST00000520755 FAM47E-STBD1D6RA91 191 aa13.86□□□□□ -0.19
LSM1-203ENST00000520755 ETV2O00321 342 aaPredicted RBP13.86□□□□□ -0.19
LSM1-203ENST00000520755 TIPRLO75663 272 aa13.86□□□□□ -0.19
LSM1-203ENST00000520755 NTN1O95631 604 aa13.86□□□□□ -0.19
LSM1-203ENST00000520755 IGHG3P01860 377 aa13.86□□□□□ -0.19
LSM1-203ENST00000520755 HK1P19367 917 aa13.86□□□□□ -0.19
LSM1-203ENST00000520755 SLC6A8P48029 635 aa13.86□□□□□ -0.19
LSM1-203ENST00000520755 DLX5P56178 289 aa13.86□□□□□ -0.19
LSM1-203ENST00000520755 FOXF1Q12946 379 aa13.86□□□□□ -0.19
LSM1-203ENST00000520755 GANABQ14697 944 aaKnown RBP13.86□□□□□ -0.19
LSM1-203ENST00000520755 ENTPD8Q5MY95 495 aa13.86□□□□□ -0.19
LSM1-203ENST00000520755 RANBP3LQ86VV4 465 aaPredicted RBP13.86□□□□□ -0.19
LSM1-203ENST00000520755 LSMEM1Q8N8F7 131 aa13.86□□□□□ -0.19
LSM1-203ENST00000520755 GALNT11Q8NCW6 608 aa13.86□□□□□ -0.19
LSM1-203ENST00000520755 POC1BQ8TC44 478 aa13.86□□□□□ -0.19
LSM1-203ENST00000520755 PRRC1Q96M27 445 aa13.86□□□□□ -0.19
LSM1-203ENST00000520755 ZNF559Q9BR84 538 aa13.86□□□□□ -0.19
LSM1-203ENST00000520755 CHID1Q9BWS9 393 aa13.86□□□□□ -0.19
LSM1-203ENST00000520755 ACKR4Q9NPB9 350 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms