RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 ANKRD49Q8WVL7 239 aa2.94□□□□□ -1.94
HMGB1P28-201ENST00000507778 NEIL2Q969S2 332 aa2.94□□□□□ -1.94
HMGB1P28-201ENST00000507778 PELI1Q96FA3 418 aa2.94□□□□□ -1.94
HMGB1P28-201ENST00000507778 MAGEB18Q96M61 343 aa2.94□□□□□ -1.94
HMGB1P28-201ENST00000507778 IL4I1Q96RQ9 567 aa2.94□□□□□ -1.94
HMGB1P28-201ENST00000507778 SLC35A5Q9BS91 424 aa2.94□□□□□ -1.94
HMGB1P28-201ENST00000507778 CRACR2AQ9BSW2 395 aa2.94□□□□□ -1.94
HMGB1P28-201ENST00000507778 CNPY3Q9BT09 278 aa2.94□□□□□ -1.94
HMGB1P28-201ENST00000507778 SPATA16Q9BXB7 569 aa2.94□□□□□ -1.94
HMGB1P28-201ENST00000507778 SRXN1Q9BYN0 137 aa2.94□□□□□ -1.94
HMGB1P28-201ENST00000507778 RHBGQ9H310 441 aa2.94□□□□□ -1.94
HMGB1P28-201ENST00000507778 PTGES2Q9H7Z7 377 aa2.94□□□□□ -1.94
HMGB1P28-201ENST00000507778 GORASP2Q9H8Y8 452 aa2.94□□□□□ -1.94
HMGB1P28-201ENST00000507778 ISG20L2Q9H9L3 353 aaKnown RBP2.94□□□□□ -1.94
HMGB1P28-201ENST00000507778 NUDT15Q9NV35 164 aa2.94□□□□□ -1.94
HMGB1P28-201ENST00000507778 SIGLEC8Q9NYZ4 499 aa2.94□□□□□ -1.94
HMGB1P28-201ENST00000507778 IL36GQ9NZH8 169 aa2.94□□□□□ -1.94
HMGB1P28-201ENST00000507778 C6orf203Q9P0P8 240 aaPredicted RBP2.94□□□□□ -1.94
HMGB1P28-201ENST00000507778 TMEM9Q9P0T7 183 aa2.94□□□□□ -1.94
HMGB1P28-201ENST00000507778 PCSK1NQ9UHG2 260 aa2.94□□□□□ -1.94
HMGB1P28-201ENST00000507778 RASD1Q9Y272 281 aa2.94□□□□□ -1.94
HMGB1P28-201ENST00000507778 GON4LQ3T8J9 2241 aa2.94□□□□□ -1.94
HMGB1P28-201ENST00000507778 TNRQ92752 1358 aa2.94□□□□□ -1.94
HMGB1P28-201ENST00000507778 IGHV7-81A0A0B4J1V7 117 aa2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 METTL21EPA6NDL7 271 aa2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 TUBAL3A6NHL2 446 aa2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 ZFP92A6NM28 416 aa2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 KIF2AO00139 706 aaPredicted RBP2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 PRRG1O14668 218 aa2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 ARPC3O15145 178 aa2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 PRKYO43930 277 aa2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 MTX2O75431 263 aa2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 SPAG6O75602 509 aa2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 LALBAP00709 142 aa2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 PNMTP11086 282 aa2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 ZNF44P15621 663 aa2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 POLR2EP19388 210 aaKnown RBP2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 GLRA2P23416 452 aa2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 LAP3P28838 519 aa2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 YWHABP31946 246 aaKnown RBP2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 P2RY1P47900 373 aa2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 TDO2P48775 406 aa2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 PRKXP51817 358 aa2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 HNRNPA3P51991 378 aaKnown RBP2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 PLK1P53350 603 aa2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 HSPA2P54652 639 aa2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 RIPPLY3P57055 190 aa2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 CHRNB3Q05901 458 aa2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 ELAVL3Q14576 367 aaKnown RBP2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 GANABQ14697 944 aaKnown RBP2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 KYAT1Q16773 422 aa2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 TRIM16LQ309B1 348 aa2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 TP53I3Q53FA7 332 aa2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 SPATA46Q5T0L3 261 aa2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 HSD17B13Q7Z5P4 300 aaPredicted RBP2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 LCA5Q86VQ0 697 aa2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 PPP1R27Q86WC6 154 aa2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 SKA3Q8IX90 412 aa2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 TBC1D21Q8IYX1 336 aa2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 CEND1Q8N111 149 aa2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 TMEM123Q8N131 208 aa2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 ATP6V0D2Q8N8Y2 350 aa2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 MRPS31Q92665 395 aaKnown RBP2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 EMG1Q92979 244 aaKnown RBP2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 NIPSNAP3BQ9BS92 247 aa2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 YTHDF1Q9BYJ9 559 aaKnown RBP2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 NMUR2Q9GZQ4 415 aa2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 PIPOXQ9P0Z9 390 aa2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 UBQLN1Q9UMX0 589 aaKnown RBP2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 ERVW-1Q9UQF0 538 aa2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 AK6Q9Y3D8 172 aaKnown RBP2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 KIF25-AS1Q9Y6Z4 181 aa2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 CLSPNQ9HAW4 1339 aa2.93□□□□□ -1.94
HMGB1P28-201ENST00000507778 IGHV1OR15-1A0A075B7D0 117 aa2.92□□□□□ -1.94
HMGB1P28-201ENST00000507778 A0A1B0GVY2 172 aa2.92□□□□□ -1.94
HMGB1P28-201ENST00000507778 LRP5LA4QPB2 252 aa2.92□□□□□ -1.94
HMGB1P28-201ENST00000507778 TAPBPO15533 448 aa2.92□□□□□ -1.94
HMGB1P28-201ENST00000507778 SLITRK3O94933 977 aa2.92□□□□□ -1.94
HMGB1P28-201ENST00000507778 HSMCR30P0CW71 290 aa2.92□□□□□ -1.94
HMGB1P28-201ENST00000507778 IMPDH1P20839 514 aa2.92□□□□□ -1.94
HMGB1P28-201ENST00000507778 MMP11P24347 488 aa2.92□□□□□ -1.94
HMGB1P28-201ENST00000507778 FGF9P31371 208 aaPredicted RBP2.92□□□□□ -1.94
HMGB1P28-201ENST00000507778 GBX2P52951 348 aaPredicted RBP2.92□□□□□ -1.94
HMGB1P28-201ENST00000507778 MAP2K1Q02750 393 aaPredicted RBP2.92□□□□□ -1.94
HMGB1P28-201ENST00000507778 GPM6BQ13491 265 aa2.92□□□□□ -1.94
HMGB1P28-201ENST00000507778 SLC25A52Q3SY17 297 aa2.92□□□□□ -1.94
HMGB1P28-201ENST00000507778 LCE3CQ5T5A8 94 aa2.92□□□□□ -1.94
HMGB1P28-201ENST00000507778 BEND3Q5T5X7 828 aa2.92□□□□□ -1.94
HMGB1P28-201ENST00000507778 TPGS2Q68CL5 300 aa2.92□□□□□ -1.94
HMGB1P28-201ENST00000507778 WDR74Q6RFH5 385 aaPredicted RBP2.92□□□□□ -1.94
HMGB1P28-201ENST00000507778 CCDC80Q76M96 950 aa2.92□□□□□ -1.94
HMGB1P28-201ENST00000507778 ARCQ7LC44 396 aa2.92□□□□□ -1.94
HMGB1P28-201ENST00000507778 TMEM179BQ7Z7N9 219 aa2.92□□□□□ -1.94
HMGB1P28-201ENST00000507778 ZNF589Q86UQ0 364 aaPredicted RBP2.92□□□□□ -1.94
HMGB1P28-201ENST00000507778 CCDC50Q8IVM0 306 aa2.92□□□□□ -1.94
HMGB1P28-201ENST00000507778 SVOPLQ8N434 492 aa2.92□□□□□ -1.94
HMGB1P28-201ENST00000507778 FAM133AQ8N9E0 248 aa2.92□□□□□ -1.94
HMGB1P28-201ENST00000507778 OR9A1PQ8NGU1 263 aa2.92□□□□□ -1.94
HMGB1P28-201ENST00000507778 FBXO30Q8TB52 745 aa2.92□□□□□ -1.94
HMGB1P28-201ENST00000507778 PAQR8Q8TEZ7 354 aa2.92□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms