RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 PSMA8Q8TAA3 256 aa18.63■□□□□ 0.57
SQSTM1-210ENST00000506042 APH1AQ96BI3 265 aa18.63■□□□□ 0.57
SQSTM1-210ENST00000506042 BHLHE41Q9C0J9 482 aaPredicted RBP18.63■□□□□ 0.57
SQSTM1-210ENST00000506042 COQ10BQ9H8M1 238 aa18.63■□□□□ 0.57
SQSTM1-210ENST00000506042 SIRT3Q9NTG7 399 aaPredicted RBP18.63■□□□□ 0.57
SQSTM1-210ENST00000506042 PTGDR2Q9Y5Y4 395 aa18.63■□□□□ 0.57
SQSTM1-210ENST00000506042 USF3Q68DE3 2245 aa18.62■□□□□ 0.57
SQSTM1-210ENST00000506042 CSPG4Q6UVK1 2322 aa18.62■□□□□ 0.57
SQSTM1-210ENST00000506042 OR5H1A6NKK0 313 aa18.62■□□□□ 0.57
SQSTM1-210ENST00000506042 SMIM23A6NLE4 172 aa18.62■□□□□ 0.57
SQSTM1-210ENST00000506042 DNPH1O43598 174 aa18.62■□□□□ 0.57
SQSTM1-210ENST00000506042 ADAM11O75078 769 aa18.62■□□□□ 0.57
SQSTM1-210ENST00000506042 CSTAP01040 98 aa18.62■□□□□ 0.57
SQSTM1-210ENST00000506042 TFPIP10646 304 aa18.62■□□□□ 0.57
SQSTM1-210ENST00000506042 SHC1P29353 583 aa18.62■□□□□ 0.57
SQSTM1-210ENST00000506042 PDK3Q15120 406 aa18.62■□□□□ 0.57
SQSTM1-210ENST00000506042 PGGHGQ32M88 737 aa18.62■□□□□ 0.57
SQSTM1-210ENST00000506042 TIGD2Q4W5G0 525 aa18.62■□□□□ 0.57
SQSTM1-210ENST00000506042 EXOSC6Q5RKV6 272 aaKnown RBP18.62■□□□□ 0.57
SQSTM1-210ENST00000506042 FNDC5Q8NAU1 212 aa18.62■□□□□ 0.57
SQSTM1-210ENST00000506042 PIGXQ8TBF5 258 aa18.62■□□□□ 0.57
SQSTM1-210ENST00000506042 LAT2Q9GZY6 243 aa18.62■□□□□ 0.57
SQSTM1-210ENST00000506042 FKRPQ9H9S5 495 aa18.62■□□□□ 0.57
SQSTM1-210ENST00000506042 CBLN4Q9NTU7 201 aa18.62■□□□□ 0.57
SQSTM1-210ENST00000506042 NOSIPQ9Y314 301 aaKnown RBP18.62■□□□□ 0.57
SQSTM1-210ENST00000506042 TLN2Q9Y4G6 2542 aa18.61■□□□□ 0.57
SQSTM1-210ENST00000506042 A0A1W2PNR3 127 aa18.61■□□□□ 0.57
SQSTM1-210ENST00000506042 DPRXA6NFQ7 191 aa18.61■□□□□ 0.57
SQSTM1-210ENST00000506042 SERINC4A6NH21 518 aa18.61■□□□□ 0.57
SQSTM1-210ENST00000506042 PIP5K1BO14986 540 aa18.61■□□□□ 0.57
SQSTM1-210ENST00000506042 COX5AP20674 150 aa18.61■□□□□ 0.57
SQSTM1-210ENST00000506042 EFNA1P20827 205 aaPredicted RBP18.61■□□□□ 0.57
SQSTM1-210ENST00000506042 APOBEC1P41238 236 aaKnown RBP18.61■□□□□ 0.57
SQSTM1-210ENST00000506042 HPCAP84074 193 aa18.61■□□□□ 0.57
SQSTM1-210ENST00000506042 TGFBR3Q03167 851 aa18.61■□□□□ 0.57
SQSTM1-210ENST00000506042 MERTKQ12866 999 aa18.61■□□□□ 0.57
SQSTM1-210ENST00000506042 FBXW9Q5XUX1 488 aa18.61■□□□□ 0.57
SQSTM1-210ENST00000506042 VPS37AQ8NEZ2 397 aa18.61■□□□□ 0.57
SQSTM1-210ENST00000506042 OR7A2PQ8NGA2 310 aa18.61■□□□□ 0.57
SQSTM1-210ENST00000506042 ZNF563Q8TA94 476 aa18.61■□□□□ 0.57
SQSTM1-210ENST00000506042 OR7D2Q96RA2 312 aa18.61■□□□□ 0.57
SQSTM1-210ENST00000506042 DHRS9Q9BPW9 319 aa18.61■□□□□ 0.57
SQSTM1-210ENST00000506042 GATA5Q9BWX5 397 aaPredicted RBP18.61■□□□□ 0.57
SQSTM1-210ENST00000506042 CXorf36Q9H7Y0 433 aa18.61■□□□□ 0.57
SQSTM1-210ENST00000506042 TNFRSF12AQ9NP84 129 aa18.61■□□□□ 0.57
SQSTM1-210ENST00000506042 PARPBPQ9NWS1 579 aa18.61■□□□□ 0.57
SQSTM1-210ENST00000506042 ASB6Q9NWX5 421 aa18.61■□□□□ 0.57
SQSTM1-210ENST00000506042 SLC35A3Q9Y2D2 325 aa18.61■□□□□ 0.57
SQSTM1-210ENST00000506042 PMF1-BGLAPU3KQ54 211 aa18.61■□□□□ 0.57
SQSTM1-210ENST00000506042 IGHV3-15A0A0B4J1V0 119 aa18.6■□□□□ 0.57
SQSTM1-210ENST00000506042 ZNF814B7Z6K7 855 aa18.6■□□□□ 0.57
SQSTM1-210ENST00000506042 PEX11AO75192 247 aa18.6■□□□□ 0.57
SQSTM1-210ENST00000506042 NTN1O95631 604 aa18.6■□□□□ 0.57
SQSTM1-210ENST00000506042 C6orf47O95873 294 aa18.6■□□□□ 0.57
SQSTM1-210ENST00000506042 FAM157CP0CG43 387 aa18.6■□□□□ 0.57
SQSTM1-210ENST00000506042 CLK1P49759 484 aaKnown RBP18.6■□□□□ 0.57
SQSTM1-210ENST00000506042 DIO1P49895 249 aa18.6■□□□□ 0.57
SQSTM1-210ENST00000506042 C21orf58P58505 322 aa18.6■□□□□ 0.57
SQSTM1-210ENST00000506042 KRTAP1-1Q07627 177 aa18.6■□□□□ 0.57
SQSTM1-210ENST00000506042 GPR68Q15743 365 aa18.6■□□□□ 0.57
SQSTM1-210ENST00000506042 FAM153CQ494X1 144 aa18.6■□□□□ 0.57
SQSTM1-210ENST00000506042 SYT14P1Q58G82 188 aa18.6■□□□□ 0.57
SQSTM1-210ENST00000506042 PDZK1Q5T2W1 519 aa18.6■□□□□ 0.57
SQSTM1-210ENST00000506042 ZNF544Q6NX49 715 aa18.6■□□□□ 0.57
SQSTM1-210ENST00000506042 TMPPEQ6ZT21 453 aa18.6■□□□□ 0.57
SQSTM1-210ENST00000506042 MTDHQ86UE4 582 aaKnown RBP18.6■□□□□ 0.57
SQSTM1-210ENST00000506042 RHOXF2Q9BQY4 288 aa18.6■□□□□ 0.57
SQSTM1-210ENST00000506042 THUMPD3Q9BV44 507 aaKnown RBP18.6■□□□□ 0.57
SQSTM1-210ENST00000506042 DUSP26Q9BV47 211 aa18.6■□□□□ 0.57
SQSTM1-210ENST00000506042 BEX2Q9BXY8 128 aa18.6■□□□□ 0.57
SQSTM1-210ENST00000506042 TAS2R16Q9NYV7 291 aa18.6■□□□□ 0.57
SQSTM1-210ENST00000506042 PRSS50Q9UI38 385 aa18.6■□□□□ 0.57
SQSTM1-210ENST00000506042 ROS1P08922 2347 aa18.6■□□□□ 0.57
SQSTM1-210ENST00000506042 NPIPA5A0A0B4J1W7 369 aa18.59■□□□□ 0.57
SQSTM1-210ENST00000506042 NPIPA7E9PJI5 369 aa18.59■□□□□ 0.57
SQSTM1-210ENST00000506042 ETV2O00321 342 aaPredicted RBP18.59■□□□□ 0.57
SQSTM1-210ENST00000506042 SMAD9O15198 467 aaKnown RBP18.59■□□□□ 0.57
SQSTM1-210ENST00000506042 MRPL33O75394 65 aaKnown RBP18.59■□□□□ 0.57
SQSTM1-210ENST00000506042 PGM3O95394 542 aa18.59■□□□□ 0.57
SQSTM1-210ENST00000506042 NPIPA8P0DM63 369 aa18.59■□□□□ 0.57
SQSTM1-210ENST00000506042 LAMP1P11279 417 aa18.59■□□□□ 0.57
SQSTM1-210ENST00000506042 UQCRBP14927 111 aa18.59■□□□□ 0.57
SQSTM1-210ENST00000506042 MATN1P21941 496 aa18.59■□□□□ 0.57
SQSTM1-210ENST00000506042 TTKP33981 857 aa18.59■□□□□ 0.57
SQSTM1-210ENST00000506042 MAGEA8P43361 318 aa18.59■□□□□ 0.57
SQSTM1-210ENST00000506042 FABP6P51161 128 aa18.59■□□□□ 0.57
SQSTM1-210ENST00000506042 PCLAFQ15004 111 aa18.59■□□□□ 0.57
SQSTM1-210ENST00000506042 KLHL24Q6TFL4 600 aa18.59■□□□□ 0.57
SQSTM1-210ENST00000506042 MUC15Q8N387 334 aa18.59■□□□□ 0.57
SQSTM1-210ENST00000506042 RIBC1Q8N443 379 aaPredicted RBP18.59■□□□□ 0.57
SQSTM1-210ENST00000506042 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP18.59■□□□□ 0.571e-6■■■■■ 56.2
SQSTM1-210ENST00000506042 NEUROG1Q92886 237 aa18.59■□□□□ 0.57
SQSTM1-210ENST00000506042 COQ8BQ96D53 544 aa18.59■□□□□ 0.57
SQSTM1-210ENST00000506042 APOPT1Q96IL0 206 aa18.59■□□□□ 0.57
SQSTM1-210ENST00000506042 SLC35G5Q96KT7 338 aa18.59■□□□□ 0.57
SQSTM1-210ENST00000506042 KCNK17Q96T54 332 aa18.59■□□□□ 0.57
SQSTM1-210ENST00000506042 SDF2Q99470 211 aa18.59■□□□□ 0.57
SQSTM1-210ENST00000506042 CACNG6Q9BXT2 260 aa18.59■□□□□ 0.57
SQSTM1-210ENST00000506042 TUBB1Q9H4B7 451 aa18.59■□□□□ 0.57
SQSTM1-210ENST00000506042 POLE3Q9NRF9 147 aa18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms