RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 UTP15Q8TED0 518 aaKnown RBP3.5□□□□□ -1.85
USP54-217ENST00000498213 GRK7Q8WTQ7 553 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 SLC5A11Q8WWX8 675 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 TANKQ92844 425 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 ERP27Q96DN0 273 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 WDR34Q96EX3 536 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 VPS39Q96JC1 886 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 C16orf45Q96MC5 204 aaPredicted RBP3.5□□□□□ -1.85
USP54-217ENST00000498213 NPAS1Q99742 590 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 NPAS2Q99743 824 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 LRRC1Q9BTT6 524 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 TBCDQ9BTW9 1192 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 ACAT2Q9BWD1 397 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 CADM1Q9BY67 442 aaKnown RBP3.5□□□□□ -1.85
USP54-217ENST00000498213 TTTY12Q9BZ98 90 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 DEFB127Q9H1M4 99 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 RHBGQ9H310 441 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 Q9N2J8 555 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 SH2D2AQ9NP31 389 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 TMEM160Q9NX00 188 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 ZNF226Q9NYT6 803 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 FBXO5Q9UKT4 447 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 ACAD8Q9UKU7 415 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 DHDHQ9UQ10 334 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 KLHL20Q9Y2M5 609 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 FAM215AQ9Y5M1 114 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 SNX8Q9Y5X2 465 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 DNAJC13O75165 2243 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 ROS1P08922 2347 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 TRBV11-1A0A0K0K1C0 115 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 ZCWPW2A0A1B0GU75 182 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 LRIT2A6NDA9 550 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 HMX3A6NHT5 357 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 SGK494L7N484 410 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 CCL22O00626 93 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 ACOX3O15254 700 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 PIN1P1O15428 100 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 P2RX6O15547 441 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 OR1F1O43749 312 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 NIPSNAP2O75323 286 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 GUCY1B2O75343 617 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 RDH16O75452 317 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 MYO1DO94832 1006 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 C1QAP02745 245 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 PRB2P02812 416 aaPredicted RBP3.49□□□□□ -1.85
USP54-217ENST00000498213 HPNP05981 417 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 CPN1P15169 458 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 PSMB5P28074 263 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 CASP2P42575 452 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 MARCKSL1P49006 195 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 FNTAP49354 379 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 RPS6KA3P51812 740 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 CDH12P55289 794 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 ATP6V0D1P61421 351 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 PHEXP78562 749 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 BASP1P80723 227 aaKnown RBP3.49□□□□□ -1.85
USP54-217ENST00000498213 IGLV3-21P80748 117 aaPredicted RBP3.49□□□□□ -1.85
USP54-217ENST00000498213 MRPS22P82650 360 aaKnown RBP3.49□□□□□ -1.85
USP54-217ENST00000498213 MAT1AQ00266 395 aaKnown RBP3.49□□□□□ -1.85
USP54-217ENST00000498213 PLIN5Q00G26 463 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 FOXO1Q12778 655 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 STX4Q12846 297 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 KCNJ11Q14654 390 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 HIST2H2ACQ16777 129 aaPredicted RBP3.49□□□□□ -1.85
USP54-217ENST00000498213 ZNF791Q3KP31 576 aaPredicted RBP3.49□□□□□ -1.85
USP54-217ENST00000498213 DEFB134Q4QY38 66 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 CCDC38Q502W7 563 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 PIGGQ5H8A4 983 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 SPANXN3Q5MJ09 141 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 HIST2H2AA3Q6FI13 130 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 FAM45BPQ6NSW5 357 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 ENPP6Q6UWR7 440 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 CCBE1Q6UXH8 406 aaPredicted RBP3.49□□□□□ -1.85
USP54-217ENST00000498213 FAM47EQ6ZV65 393 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 LANCL3Q6ZV70 420 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 PLEKHM3Q6ZWE6 761 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 CREB3L2Q70SY1 520 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 GSTA5Q7RTV2 222 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 ZNF367Q7RTV3 350 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 TBC1D1Q86TI0 1168 aaPredicted RBP3.49□□□□□ -1.85
USP54-217ENST00000498213 LDB1Q86U70 411 aaPredicted RBP3.49□□□□□ -1.85
USP54-217ENST00000498213 NR2C2APQ86WQ0 139 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 ST13P4Q8IZP2 240 aaPredicted RBP3.49□□□□□ -1.85
USP54-217ENST00000498213 KRT222Q8N1A0 295 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 ZCCHC7Q8N3Z6 543 aaKnown RBP3.49□□□□□ -1.85
USP54-217ENST00000498213 NEIL3Q8TAT5 605 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 FAM45AQ8TCE6 357 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 LKAAEAR1Q8TD35 194 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 SPACA9Q96E40 222 aaPredicted RBP3.49□□□□□ -1.85
USP54-217ENST00000498213 PIK3IP1Q96FE7 263 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 RBM18Q96H35 190 aaKnown RBP3.49□□□□□ -1.85
USP54-217ENST00000498213 ZNF597Q96LX8 424 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 SERPINB12Q96P63 405 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 FRG2BQ96QU4 278 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 RASL10BQ96S79 203 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 WDR12Q9GZL7 423 aaKnown RBP3.49□□□□□ -1.85
USP54-217ENST00000498213 KLHL31Q9H511 634 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 PRTFDC1Q9NRG1 225 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 ZNF701Q9NV72 531 aaPredicted RBP3.49□□□□□ -1.85
USP54-217ENST00000498213 PAQR5Q9NXK6 330 aaPredicted RBP3.49□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms