RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 FANCFQ9NPI8 374 aa2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 B3GNT2Q9NY97 397 aa2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 SIGLEC8Q9NYZ4 499 aa2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 AIPL1Q9NZN9 384 aa2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 OR1A1Q9P1Q5 309 aa2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 RNF14Q9UBS8 474 aa2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 ANGPTL2Q9UKU9 493 aa2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 PDE10AQ9Y233 779 aa2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 MRPS33Q9Y291 106 aaKnown RBP2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 KDRP35968 1356 aa2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 FRMPD3Q5JV73 1810 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 NPIPA7E9PJI5 369 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 G3V4G9 280 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 SULT2B1O00204 365 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 PRRG1O14668 218 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 SPAG6O75602 509 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 SERF1AO75920 110 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 ACTL6AO96019 429 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 IGHV3-23P01764 117 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 HSPB1P04792 205 aaKnown RBP2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 H2BFMP0C1H6 154 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 NPIPA8P0DM63 369 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 IGLL1P15814 213 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 GCFC2P16383 781 aaKnown RBP2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 CYP2B6P20813 491 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 VDAC1P21796 283 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 EPHX2P34913 555 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 GCKP35557 465 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 KIR2DS2P43631 304 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 OR3A4PP47883 348 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 HNMTP50135 292 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 ARFIP1P53367 373 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 HSPA2P54652 639 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 AANATQ16613 207 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 ISXQ2M1V0 245 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 TP53I3Q53FA7 332 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 CFAP157Q5JU67 520 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 C10orf120Q5SQS8 335 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 C9orf129Q5T035 196 aaKnown RBP2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 ATF7IP2Q5U623 682 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 METTL11BQ5VVY1 283 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 TTC23Q5W5X9 447 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 FRA10AC1Q70Z53 315 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 MOB1BQ7L9L4 216 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 PPP1R42Q7Z4L9 355 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 ZNF683Q8IZ20 524 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 CEND1Q8N111 149 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 FAM133AQ8N9E0 248 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 SYT14Q8NB59 555 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 OR10A7Q8NGE5 316 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 OR52M1Q8NGK5 317 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 OR1F12Q8NHA8 337 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 TRMT10AQ8TBZ6 339 aaKnown RBP2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 RLN3Q8WXF3 142 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 PELI1Q96FA3 418 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 MS4A14Q96JA4 679 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 C7orf34Q96L11 122 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 MCHR1Q99705 422 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 EDEM2Q9BV94 578 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 GORASP2Q9H8Y8 452 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 RAB18Q9NP72 206 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 LCMT1Q9UIC8 334 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 NPIPA1Q9UND3 350 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 SCML2Q9UQR0 700 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 MRPS7Q9Y2R9 242 aaKnown RBP2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 MAB21L2Q9Y586 359 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 MAD1L1Q9Y6D9 718 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 ATAD2BQ9ULI0 1458 aa2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 RAI1Q7Z5J4 1906 aaPredicted RBP2.05□□□□□ -2.08
CCDC88A-212ENST00000474059 A0A1B0GWB2 263 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 METTL21EPA6NDL7 271 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 EPOPA6NHQ4 379 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 RSPH10B2B2RC85 870 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 KIF2AO00139 706 aaPredicted RBP2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 ARPC3O15145 178 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 RS1O15537 224 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 TPST2O60704 377 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 UGT2B17O75795 530 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 LRATO95237 230 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 GNA14O95837 355 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 ALOX5P09917 674 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 OR8U8P0C7N1 319 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 RSPH10BP0C881 870 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 CD1EP15812 388 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 POLR2EP19388 210 aaKnown RBP2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 CD80P33681 288 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 PRPHP41219 470 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 P2RY1P47900 373 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 DIO3P55073 304 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 RIPPLY3P57055 190 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 RPS8P62241 208 aaKnown RBP2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 SPIBQ01892 262 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 OC90Q02509 493 aaPredicted RBP2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 LRRC36Q1X8D7 754 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 LIPNQ5VXI9 398 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 ATL3Q6DD88 541 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 DNM1P46Q6ZS02 220 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 FAM43BQ6ZT52 329 aaPredicted RBP2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 MOB3BQ86TA1 216 aa2.04□□□□□ -2.08
CCDC88A-212ENST00000474059 TPRA1Q86W33 373 aa2.04□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms