RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 DUSP7Q16829 419 aa10.78□□□□□ -0.68
VPS13D-204ENST00000469054 GLIPR1L2Q4G1C9 344 aa10.78□□□□□ -0.68
VPS13D-204ENST00000469054 RTL6Q6ICC9 239 aa10.78□□□□□ -0.68
VPS13D-204ENST00000469054 TMEM211Q6ICI0 200 aa10.78□□□□□ -0.68
VPS13D-204ENST00000469054 C16orf89Q6UX73 402 aa10.78□□□□□ -0.68
VPS13D-204ENST00000469054 MEIOBQ8N635 442 aa10.78□□□□□ -0.68
VPS13D-204ENST00000469054 SLC26A7Q8TE54 656 aa10.78□□□□□ -0.68
VPS13D-204ENST00000469054 SMPDL3BQ92485 455 aa10.78□□□□□ -0.68
VPS13D-204ENST00000469054 TAMM41Q96BW9 452 aa10.78□□□□□ -0.68
VPS13D-204ENST00000469054 SLC13A4Q9UKG4 626 aa10.78□□□□□ -0.68
VPS13D-204ENST00000469054 ZNF407Q9C0G0 2248 aa10.78□□□□□ -0.68
VPS13D-204ENST00000469054 ZGRF1Q86YA3 2104 aa10.78□□□□□ -0.68
VPS13D-204ENST00000469054 CLEC18AA5D8T8 446 aa10.77□□□□□ -0.69
VPS13D-204ENST00000469054 H0Y3Z8 333 aa10.77□□□□□ -0.69
VPS13D-204ENST00000469054 SYT5O00445 386 aa10.77□□□□□ -0.69
VPS13D-204ENST00000469054 SEC14L5O43304 696 aa10.77□□□□□ -0.69
VPS13D-204ENST00000469054 FRS3O43559 492 aa10.77□□□□□ -0.69
VPS13D-204ENST00000469054 AGFG2O95081 481 aa10.77□□□□□ -0.69
VPS13D-204ENST00000469054 LGI1O95970 557 aa10.77□□□□□ -0.69
VPS13D-204ENST00000469054 IFNA14P01570 189 aa10.77□□□□□ -0.69
VPS13D-204ENST00000469054 C8BP07358 591 aa10.77□□□□□ -0.69
VPS13D-204ENST00000469054 GP1BBP13224 206 aa10.77□□□□□ -0.69
VPS13D-204ENST00000469054 PRG2P13727 222 aa10.77□□□□□ -0.69
VPS13D-204ENST00000469054 IL11P20809 199 aa10.77□□□□□ -0.69
VPS13D-204ENST00000469054 ME2P23368 584 aa10.77□□□□□ -0.69
VPS13D-204ENST00000469054 KDELR2P33947 212 aa10.77□□□□□ -0.69
VPS13D-204ENST00000469054 CPOXP36551 454 aa10.77□□□□□ -0.69
VPS13D-204ENST00000469054 SLC1A3P43003 542 aa10.77□□□□□ -0.69
VPS13D-204ENST00000469054 KCNJ5P48544 419 aa10.77□□□□□ -0.69
VPS13D-204ENST00000469054 SUCLG1P53597 346 aaKnown RBP10.77□□□□□ -0.69
VPS13D-204ENST00000469054 CRYBA2P53672 197 aa10.77□□□□□ -0.69
VPS13D-204ENST00000469054 CLDN15P56746 228 aa10.77□□□□□ -0.69
VPS13D-204ENST00000469054 CLDN20P56880 219 aa10.77□□□□□ -0.69
VPS13D-204ENST00000469054 COPZ1P61923 177 aa10.77□□□□□ -0.69
VPS13D-204ENST00000469054 MERTKQ12866 999 aa10.77□□□□□ -0.69
VPS13D-204ENST00000469054 SELENBP1Q13228 472 aa10.77□□□□□ -0.69
VPS13D-204ENST00000469054 ACSF3Q4G176 576 aaPredicted RBP10.77□□□□□ -0.69
VPS13D-204ENST00000469054 C1orf185Q5T7R7 199 aa10.77□□□□□ -0.69
VPS13D-204ENST00000469054 MTFR2Q6P444 385 aa10.77□□□□□ -0.69
VPS13D-204ENST00000469054 CLEC18BQ6UXF7 455 aa10.77□□□□□ -0.69
VPS13D-204ENST00000469054 B3GNT6Q6ZMB0 384 aa10.77□□□□□ -0.69
VPS13D-204ENST00000469054 PLEKHM3Q6ZWE6 761 aa10.77□□□□□ -0.69
VPS13D-204ENST00000469054 GRINAQ7Z429 371 aa10.77□□□□□ -0.69
VPS13D-204ENST00000469054 COMTD1Q86VU5 262 aa10.77□□□□□ -0.69
VPS13D-204ENST00000469054 UBQLNLQ8IYU4 475 aa10.77□□□□□ -0.69
VPS13D-204ENST00000469054 DEFB107AQ8IZN7 70 aa10.77□□□□□ -0.69
VPS13D-204ENST00000469054 LILRA2Q8N149 483 aa10.77□□□□□ -0.69
VPS13D-204ENST00000469054 RPRMLQ8N4K4 120 aa10.77□□□□□ -0.69
VPS13D-204ENST00000469054 CLEC18CQ8NCF0 446 aa10.77□□□□□ -0.69
VPS13D-204ENST00000469054 RBM15BQ8NDT2 890 aaKnown RBP10.77□□□□□ -0.69
VPS13D-204ENST00000469054 TNIP2Q8NFZ5 429 aa10.77□□□□□ -0.69
VPS13D-204ENST00000469054 PHF10Q8WUB8 498 aaKnown RBP10.77□□□□□ -0.69
VPS13D-204ENST00000469054 RASSF5Q8WWW0 418 aa10.77□□□□□ -0.69
VPS13D-204ENST00000469054 CCDC120Q96HB5 630 aa10.77□□□□□ -0.69
VPS13D-204ENST00000469054 DMRTA2Q96SC8 542 aa10.77□□□□□ -0.69
VPS13D-204ENST00000469054 CDRT15Q96T59 188 aa10.77□□□□□ -0.69
VPS13D-204ENST00000469054 KCTD14Q9BQ13 255 aaPredicted RBP10.77□□□□□ -0.69
VPS13D-204ENST00000469054 TUBA1CQ9BQE3 449 aa10.77□□□□□ -0.69
VPS13D-204ENST00000469054 KLHL28Q9NXS3 571 aa10.77□□□□□ -0.69
VPS13D-204ENST00000469054 FAM215AQ9Y5M1 114 aa10.77□□□□□ -0.69
VPS13D-204ENST00000469054 NCKAP5O14513 1909 aa10.76□□□□□ -0.69
VPS13D-204ENST00000469054 DNAJC13O75165 2243 aa10.76□□□□□ -0.69
VPS13D-204ENST00000469054 GJE1A6NN92 205 aa10.76□□□□□ -0.69
VPS13D-204ENST00000469054 H0YC42 278 aa10.76□□□□□ -0.69
VPS13D-204ENST00000469054 CXCR6O00574 342 aa10.76□□□□□ -0.69
VPS13D-204ENST00000469054 UBOX5O94941 541 aa10.76□□□□□ -0.69
VPS13D-204ENST00000469054 OPN1LWP04000 364 aa10.76□□□□□ -0.69
VPS13D-204ENST00000469054 FESP07332 822 aa10.76□□□□□ -0.69
VPS13D-204ENST00000469054 CD247P20963 164 aa10.76□□□□□ -0.69
VPS13D-204ENST00000469054 APOBEC1P41238 236 aaKnown RBP10.76□□□□□ -0.69
VPS13D-204ENST00000469054 HTR3AP46098 478 aa10.76□□□□□ -0.69
VPS13D-204ENST00000469054 TPD52P55327 224 aaPredicted RBP10.76□□□□□ -0.69
VPS13D-204ENST00000469054 PER3P56645 1201 aa10.76□□□□□ -0.69
VPS13D-204ENST00000469054 RPS3AP61247 264 aaKnown RBP10.76□□□□□ -0.69
VPS13D-204ENST00000469054 HOXC5Q00444 222 aa10.76□□□□□ -0.69
VPS13D-204ENST00000469054 TMEM176BQ3YBM2 270 aaPredicted RBP10.76□□□□□ -0.69
VPS13D-204ENST00000469054 SAMD4BQ5PRF9 694 aaKnown RBP10.76□□□□□ -0.69
VPS13D-204ENST00000469054 NSUN5P2Q63ZY6 315 aa10.76□□□□□ -0.69
VPS13D-204ENST00000469054 WBP2NLQ6ICG8 309 aa10.76□□□□□ -0.69
VPS13D-204ENST00000469054 RPTNQ6XPR3 784 aa10.76□□□□□ -0.69
VPS13D-204ENST00000469054 RINLQ6ZS11 566 aa10.76□□□□□ -0.69
VPS13D-204ENST00000469054 ESPNLQ6ZVH7 1005 aa10.76□□□□□ -0.69
VPS13D-204ENST00000469054 NCCRP1Q6ZVX7 275 aaPredicted RBP10.76□□□□□ -0.69
VPS13D-204ENST00000469054 CHMP1BQ7LBR1 199 aa10.76□□□□□ -0.69
VPS13D-204ENST00000469054 ADGRE4PQ86SQ3 457 aa10.76□□□□□ -0.69
VPS13D-204ENST00000469054 GGNQ86UU5 652 aa10.76□□□□□ -0.69
VPS13D-204ENST00000469054 ADGRG3Q86Y34 549 aa10.76□□□□□ -0.69
VPS13D-204ENST00000469054 CADM2Q8N3J6 435 aa10.76□□□□□ -0.69
VPS13D-204ENST00000469054 MARVELD2Q8N4S9 558 aa10.76□□□□□ -0.69
VPS13D-204ENST00000469054 GPR32P1Q8NGA4 272 aa10.76□□□□□ -0.69
VPS13D-204ENST00000469054 FIG4Q92562 907 aa10.76□□□□□ -0.69
VPS13D-204ENST00000469054 ADGRG7Q96K78 797 aa10.76□□□□□ -0.69
VPS13D-204ENST00000469054 KLHL15Q96M94 604 aa10.76□□□□□ -0.69
VPS13D-204ENST00000469054 ARHGDIGQ99819 225 aa10.76□□□□□ -0.69
VPS13D-204ENST00000469054 WFDC6Q9BQY6 131 aa10.76□□□□□ -0.69
VPS13D-204ENST00000469054 TTYH2Q9BSA4 534 aa10.76□□□□□ -0.69
VPS13D-204ENST00000469054 ADAM19Q9H013 955 aa10.76□□□□□ -0.69
VPS13D-204ENST00000469054 TMEM185BQ9H7F4 350 aa10.76□□□□□ -0.69
VPS13D-204ENST00000469054 EVA1AQ9H8M9 152 aa10.76□□□□□ -0.69
VPS13D-204ENST00000469054 CALHM2Q9HA72 323 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms