RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 NEIL3Q8TAT5 605 aa13.76□□□□□ -0.21
NPHP4-205ENST00000466897 WFDC6Q9BQY6 131 aa13.76□□□□□ -0.21
NPHP4-205ENST00000466897 UGT2B28Q9BY64 529 aa13.76□□□□□ -0.21
NPHP4-205ENST00000466897 ADAM19Q9H013 955 aa13.76□□□□□ -0.21
NPHP4-205ENST00000466897 VDAC3Q9Y277 283 aa13.76□□□□□ -0.21
NPHP4-205ENST00000466897 SPTA1P02549 2419 aa13.76□□□□□ -0.21
NPHP4-205ENST00000466897 MPDZO75970 2070 aa13.76□□□□□ -0.21
NPHP4-205ENST00000466897 KIAA1549Q9HCM3 1950 aa13.76□□□□□ -0.21
NPHP4-205ENST00000466897 TRGV5A0A0B4J1U4 118 aa13.75□□□□□ -0.21
NPHP4-205ENST00000466897 TCRBV3S1A0A5B6 114 aa13.75□□□□□ -0.21
NPHP4-205ENST00000466897 OR14I1A6ND48 311 aa13.75□□□□□ -0.21
NPHP4-205ENST00000466897 AQP7O14520 342 aa13.75□□□□□ -0.21
NPHP4-205ENST00000466897 RRP9O43818 475 aaKnown RBP13.75□□□□□ -0.21
NPHP4-205ENST00000466897 GMFGO60234 142 aa13.75□□□□□ -0.21
NPHP4-205ENST00000466897 TPST2O60704 377 aa13.75□□□□□ -0.21
NPHP4-205ENST00000466897 ACTL6AO96019 429 aa13.75□□□□□ -0.21
NPHP4-205ENST00000466897 GPIP06744 558 aa13.75□□□□□ -0.21
NPHP4-205ENST00000466897 CELA3AP09093 270 aa13.75□□□□□ -0.21
NPHP4-205ENST00000466897 GP1BBP13224 206 aa13.75□□□□□ -0.21
NPHP4-205ENST00000466897 NQO1P15559 274 aaKnown RBP13.75□□□□□ -0.21
NPHP4-205ENST00000466897 FKBP2P26885 142 aaKnown RBP13.75□□□□□ -0.21
NPHP4-205ENST00000466897 HTR2AP28223 471 aa13.75□□□□□ -0.21
NPHP4-205ENST00000466897 GCKP35557 465 aa13.75□□□□□ -0.21
NPHP4-205ENST00000466897 APOBEC1P41238 236 aaKnown RBP13.75□□□□□ -0.21
NPHP4-205ENST00000466897 FOXF1Q12946 379 aa13.75□□□□□ -0.21
NPHP4-205ENST00000466897 TOMM20Q15388 145 aa13.75□□□□□ -0.21
NPHP4-205ENST00000466897 C1orf146Q5VVC0 180 aa13.75□□□□□ -0.21
NPHP4-205ENST00000466897 AAGABQ6PD74 315 aa13.75□□□□□ -0.21
NPHP4-205ENST00000466897 ENPP6Q6UWR7 440 aa13.75□□□□□ -0.21
NPHP4-205ENST00000466897 FAM86B1Q8N7N1 296 aa13.75□□□□□ -0.21
NPHP4-205ENST00000466897 DNAJA4Q8WW22 397 aaPredicted RBP13.75□□□□□ -0.21
NPHP4-205ENST00000466897 ZNF524Q96C55 264 aa13.75□□□□□ -0.21
NPHP4-205ENST00000466897 C7orf34Q96L11 122 aa13.75□□□□□ -0.21
NPHP4-205ENST00000466897 MCHR1Q99705 422 aa13.75□□□□□ -0.21
NPHP4-205ENST00000466897 TMEM27Q9HBJ8 222 aa13.75□□□□□ -0.21
NPHP4-205ENST00000466897 IL1RAPQ9NPH3 570 aa13.75□□□□□ -0.21
NPHP4-205ENST00000466897 ASF1BQ9NVP2 202 aa13.75□□□□□ -0.21
NPHP4-205ENST00000466897 A0A0B4J2E0 115 aa13.74□□□□□ -0.21
NPHP4-205ENST00000466897 A0A1B0GX12 115 aa13.74□□□□□ -0.21
NPHP4-205ENST00000466897 OR2M5A3KFT3 312 aa13.74□□□□□ -0.21
NPHP4-205ENST00000466897 NPIPA5E9PKD4 350 aa13.74□□□□□ -0.21
NPHP4-205ENST00000466897 THRBP10828 461 aa13.74□□□□□ -0.21
NPHP4-205ENST00000466897 EDN3P14138 238 aa13.74□□□□□ -0.21
NPHP4-205ENST00000466897 ITGA2P17301 1181 aa13.74□□□□□ -0.21
NPHP4-205ENST00000466897 TNFRSF1BP20333 461 aa13.74□□□□□ -0.21
NPHP4-205ENST00000466897 MAGEA2P43356 314 aa13.74□□□□□ -0.21
NPHP4-205ENST00000466897 OR1E2P47887 323 aa13.74□□□□□ -0.21
NPHP4-205ENST00000466897 POLR2HP52434 150 aaKnown RBP13.74□□□□□ -0.21
NPHP4-205ENST00000466897 GTF3C1Q12789 2109 aa13.74□□□□□ -0.21
NPHP4-205ENST00000466897 SELENBP1Q13228 472 aa13.74□□□□□ -0.21
NPHP4-205ENST00000466897 FAM98BQ52LJ0 330 aaKnown RBP13.74□□□□□ -0.21
NPHP4-205ENST00000466897 PRR30Q53SZ7 412 aaPredicted RBP13.74□□□□□ -0.21
NPHP4-205ENST00000466897 WIPI1Q5MNZ9 446 aaPredicted RBP13.74□□□□□ -0.21
NPHP4-205ENST00000466897 RAET1LQ5VY80 246 aa13.74□□□□□ -0.21
NPHP4-205ENST00000466897 ARHGAP11AQ6P4F7 1023 aa13.74□□□□□ -0.21
NPHP4-205ENST00000466897 ULK3Q6PHR2 472 aa13.74□□□□□ -0.21
NPHP4-205ENST00000466897 PLEKHM3Q6ZWE6 761 aa13.74□□□□□ -0.21
NPHP4-205ENST00000466897 PIWIL3Q7Z3Z3 882 aaKnown RBP13.74□□□□□ -0.21
NPHP4-205ENST00000466897 YRDCQ86U90 279 aaKnown RBP13.74□□□□□ -0.21
NPHP4-205ENST00000466897 GHDCQ8N2G8 530 aa13.74□□□□□ -0.21
NPHP4-205ENST00000466897 OR10Q1Q8NGQ4 319 aa13.74□□□□□ -0.21
NPHP4-205ENST00000466897 VANGL1Q8TAA9 524 aaPredicted RBP13.74□□□□□ -0.21
NPHP4-205ENST00000466897 POC1BQ8TC44 478 aa13.74□□□□□ -0.21
NPHP4-205ENST00000466897 CPT1CQ8TCG5 803 aa13.74□□□□□ -0.21
NPHP4-205ENST00000466897 PRRC1Q96M27 445 aa13.74□□□□□ -0.21
NPHP4-205ENST00000466897 AMBRA1Q9C0C7 1298 aa13.74□□□□□ -0.21
NPHP4-205ENST00000466897 DEFB127Q9H1M4 99 aa13.74□□□□□ -0.21
NPHP4-205ENST00000466897 ACAD8Q9UKU7 415 aa13.74□□□□□ -0.21
NPHP4-205ENST00000466897 NPIPA1Q9UND3 350 aa13.74□□□□□ -0.21
NPHP4-205ENST00000466897 LIPGQ9Y5X9 500 aa13.74□□□□□ -0.21
NPHP4-205ENST00000466897 AP4B1Q9Y6B7 739 aa13.74□□□□□ -0.21
NPHP4-205ENST00000466897 ENPP4Q9Y6X5 453 aa13.74□□□□□ -0.21
NPHP4-205ENST00000466897 KALRNO60229 2985 aa13.74□□□□□ -0.21
NPHP4-205ENST00000466897 A0A1B0GWA3 101 aa13.73□□□□□ -0.21
NPHP4-205ENST00000466897 DHRS12A0PJE2 317 aa13.73□□□□□ -0.21
NPHP4-205ENST00000466897 TRAPPC13A5PLN9 417 aa13.73□□□□□ -0.21
NPHP4-205ENST00000466897 SEMA7AO75326 666 aa13.73□□□□□ -0.21
NPHP4-205ENST00000466897 OR5F1O95221 314 aa13.73□□□□□ -0.21
NPHP4-205ENST00000466897 PNMTP11086 282 aa13.73□□□□□ -0.21
NPHP4-205ENST00000466897 ACTR3P61158 418 aa13.73□□□□□ -0.21
NPHP4-205ENST00000466897 HOXC5Q00444 222 aa13.73□□□□□ -0.21
NPHP4-205ENST00000466897 OR1Q1Q15612 314 aa13.73□□□□□ -0.21
NPHP4-205ENST00000466897 BCL2A1Q16548 175 aa13.73□□□□□ -0.21
NPHP4-205ENST00000466897 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.73□□□□□ -0.21
NPHP4-205ENST00000466897 IQCCQ4KMZ1 466 aa13.73□□□□□ -0.21
NPHP4-205ENST00000466897 ENTPD8Q5MY95 495 aa13.73□□□□□ -0.21
NPHP4-205ENST00000466897 VASNQ6EMK4 673 aa13.73□□□□□ -0.21
NPHP4-205ENST00000466897 C3orf33Q6P1S2 294 aa13.73□□□□□ -0.21
NPHP4-205ENST00000466897 ATG4DQ86TL0 474 aaPredicted RBP13.73□□□□□ -0.21
NPHP4-205ENST00000466897 RBM45Q8IUH3 476 aaKnown RBP13.73□□□□□ -0.21
NPHP4-205ENST00000466897 ADGRG5Q8IZF4 528 aa13.73□□□□□ -0.21
NPHP4-205ENST00000466897 CADM2Q8N3J6 435 aa13.73□□□□□ -0.21
NPHP4-205ENST00000466897 ADAMTS16Q8TE57 1224 aa13.73□□□□□ -0.21
NPHP4-205ENST00000466897 SLC25A43Q8WUT9 341 aaPredicted RBP13.73□□□□□ -0.21
NPHP4-205ENST00000466897 C3orf49Q96BT1 292 aa13.73□□□□□ -0.21
NPHP4-205ENST00000466897 SLC47A1Q96FL8 570 aa13.73□□□□□ -0.21
NPHP4-205ENST00000466897 DUS3LQ96G46 650 aaKnown RBP13.73□□□□□ -0.21
NPHP4-205ENST00000466897 SFXN2Q96NB2 322 aa13.73□□□□□ -0.21
NPHP4-205ENST00000466897 ZNF300Q96RE9 604 aaPredicted RBP13.73□□□□□ -0.21
NPHP4-205ENST00000466897 SLC6A15Q9H2J7 730 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms