RNA–Protein interactions for RNA: ENST00000464493.5

SQSTM1-205, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-205ENST00000464493 PIF1Q9H611 641 aa13.08□□□□□ -0.32
SQSTM1-205ENST00000464493 ACER3Q9NUN7 267 aa13.08□□□□□ -0.32
SQSTM1-205ENST00000464493 CHST2Q9Y4C5 530 aa13.08□□□□□ -0.32
SQSTM1-205ENST00000464493 SPTAN1Q13813 2472 aaKnown RBP13.07□□□□□ -0.32
SQSTM1-205ENST00000464493 CFAP73A6NFT4 308 aa13.07□□□□□ -0.32
SQSTM1-205ENST00000464493 AP3D1O14617 1153 aa13.07□□□□□ -0.32
SQSTM1-205ENST00000464493 EFNA2O43921 213 aa13.07□□□□□ -0.32
SQSTM1-205ENST00000464493 GKN3PP0CG01 181 aa13.07□□□□□ -0.32
SQSTM1-205ENST00000464493 UQCRBP14927 111 aa13.07□□□□□ -0.32
SQSTM1-205ENST00000464493 IL11P20809 199 aa13.07□□□□□ -0.32
SQSTM1-205ENST00000464493 PRKAR1BP31321 381 aa13.07□□□□□ -0.32
SQSTM1-205ENST00000464493 PCGF2P35227 344 aa13.07□□□□□ -0.32
SQSTM1-205ENST00000464493 TIMP3P35625 211 aa13.07□□□□□ -0.32
SQSTM1-205ENST00000464493 IDH2P48735 452 aaKnown RBP13.07□□□□□ -0.32
SQSTM1-205ENST00000464493 NUDT2P50583 147 aa13.07□□□□□ -0.32
SQSTM1-205ENST00000464493 DLX5P56178 289 aa13.07□□□□□ -0.32
SQSTM1-205ENST00000464493 RPS3AP61247 264 aaKnown RBP13.07□□□□□ -0.32
SQSTM1-205ENST00000464493 MERTKQ12866 999 aa13.07□□□□□ -0.32
SQSTM1-205ENST00000464493 VMACQ2NL98 169 aa13.07□□□□□ -0.32
SQSTM1-205ENST00000464493 RIPPLY2Q5TAB7 128 aa13.07□□□□□ -0.32
SQSTM1-205ENST00000464493 HACD2Q6Y1H2 254 aa13.07□□□□□ -0.32
SQSTM1-205ENST00000464493 ARPINQ7Z6K5 226 aa13.07□□□□□ -0.32
SQSTM1-205ENST00000464493 ADGRE4PQ86SQ3 457 aa13.07□□□□□ -0.32
SQSTM1-205ENST00000464493 CALHM3Q86XJ0 350 aa13.07□□□□□ -0.32
SQSTM1-205ENST00000464493 SDCCAG3Q96C92 435 aa13.07□□□□□ -0.32
SQSTM1-205ENST00000464493 ZNF583Q96ND8 569 aa13.07□□□□□ -0.32
SQSTM1-205ENST00000464493 UCN2Q96RP3 112 aa13.07□□□□□ -0.32
SQSTM1-205ENST00000464493 HOPXQ9BPY8 73 aaPredicted RBP13.07□□□□□ -0.32
SQSTM1-205ENST00000464493 GPATCH1Q9BRR8 931 aaKnown RBP13.07□□□□□ -0.32
SQSTM1-205ENST00000464493 TMEM185BQ9H7F4 350 aa13.07□□□□□ -0.32
SQSTM1-205ENST00000464493 PRDM4Q9UKN5 801 aa13.07□□□□□ -0.32
SQSTM1-205ENST00000464493 RNF6Q9Y252 685 aa13.07□□□□□ -0.32
SQSTM1-205ENST00000464493 AP3M1Q9Y2T2 418 aa13.07□□□□□ -0.32
SQSTM1-205ENST00000464493 A0A0G2JNJ9 132 aa13.06□□□□□ -0.32
SQSTM1-205ENST00000464493 MBD3L4A6NDZ8 208 aaPredicted RBP13.06□□□□□ -0.32
SQSTM1-205ENST00000464493 MBD3L3A6NE82 208 aaPredicted RBP13.06□□□□□ -0.32
SQSTM1-205ENST00000464493 PRORSD1PA6NEY8 169 aa13.06□□□□□ -0.32
SQSTM1-205ENST00000464493 MBD3L5A6NJ08 208 aaPredicted RBP13.06□□□□□ -0.32
SQSTM1-205ENST00000464493 GJE1A6NN92 205 aa13.06□□□□□ -0.32
SQSTM1-205ENST00000464493 M0QX08 132 aa13.06□□□□□ -0.32
SQSTM1-205ENST00000464493 FAAHO00519 579 aa13.06□□□□□ -0.32
SQSTM1-205ENST00000464493 EIF1AYO14602 144 aaKnown RBP13.06□□□□□ -0.32
SQSTM1-205ENST00000464493 ADAMDEC1O15204 470 aa13.06□□□□□ -0.32
SQSTM1-205ENST00000464493 TOXO94900 526 aa13.06□□□□□ -0.32
SQSTM1-205ENST00000464493 IL2RAP01589 272 aa13.06□□□□□ -0.32
SQSTM1-205ENST00000464493 GP1BBP13224 206 aa13.06□□□□□ -0.32
SQSTM1-205ENST00000464493 CEACAM8P31997 349 aaPredicted RBP13.06□□□□□ -0.32
SQSTM1-205ENST00000464493 APOBEC1P41238 236 aaKnown RBP13.06□□□□□ -0.32
SQSTM1-205ENST00000464493 ACAA2P42765 397 aaKnown RBP13.06□□□□□ -0.32
SQSTM1-205ENST00000464493 PCBP3P57721 371 aaKnown RBP13.06□□□□□ -0.32
SQSTM1-205ENST00000464493 EPS8Q12929 822 aa13.06□□□□□ -0.32
SQSTM1-205ENST00000464493 SELENBP1Q13228 472 aa13.06□□□□□ -0.32
SQSTM1-205ENST00000464493 SGCBQ16585 318 aa13.06□□□□□ -0.32
SQSTM1-205ENST00000464493 INTS11Q5TA45 600 aaKnown RBP13.06□□□□□ -0.32
SQSTM1-205ENST00000464493 ESPNLQ6ZVH7 1005 aa13.06□□□□□ -0.32
SQSTM1-205ENST00000464493 PLEKHM3Q6ZWE6 761 aa13.06□□□□□ -0.32
SQSTM1-205ENST00000464493 ZNF550Q7Z398 422 aa13.06□□□□□ -0.32
SQSTM1-205ENST00000464493 GRINAQ7Z429 371 aa13.06□□□□□ -0.32
SQSTM1-205ENST00000464493 ARMC8Q8IUR7 673 aa13.06□□□□□ -0.32
SQSTM1-205ENST00000464493 CCDC71Q8IV32 467 aaPredicted RBP13.06□□□□□ -0.32
SQSTM1-205ENST00000464493 CCDC197Q8NCU1 140 aa13.06□□□□□ -0.32
SQSTM1-205ENST00000464493 ATP6V1C2Q8NEY4 427 aa13.06□□□□□ -0.32
SQSTM1-205ENST00000464493 BHLHE22Q8NFJ8 381 aaPredicted RBP13.06□□□□□ -0.32
SQSTM1-205ENST00000464493 TNIP2Q8NFZ5 429 aa13.06□□□□□ -0.32
SQSTM1-205ENST00000464493 MBD3L2Q8NHZ7 208 aaPredicted RBP13.06□□□□□ -0.32
SQSTM1-205ENST00000464493 ASB5Q8WWX0 329 aa13.06□□□□□ -0.32
SQSTM1-205ENST00000464493 REXO5Q96IC2 774 aaKnown RBP13.06□□□□□ -0.32
SQSTM1-205ENST00000464493 RSPO3Q9BXY4 272 aaPredicted RBP13.06□□□□□ -0.32
SQSTM1-205ENST00000464493 SERINC1Q9NRX5 453 aa13.06□□□□□ -0.32
SQSTM1-205ENST00000464493 CLCF1Q9UBD9 225 aa13.06□□□□□ -0.32
SQSTM1-205ENST00000464493 Q9UFV3 132 aa13.06□□□□□ -0.32
SQSTM1-205ENST00000464493 KIAA1549Q9HCM3 1950 aa13.06□□□□□ -0.32
SQSTM1-205ENST00000464493 ICE1Q9Y2F5 2266 aa13.06□□□□□ -0.32
SQSTM1-205ENST00000464493 PTPN13Q12923 2485 aa13.05□□□□□ -0.32
SQSTM1-205ENST00000464493 A0A0J9YW62 118 aa13.05□□□□□ -0.32
SQSTM1-205ENST00000464493 A1L4Q6 167 aa13.05□□□□□ -0.32
SQSTM1-205ENST00000464493 CCT8L1PA6NM43 557 aa13.05□□□□□ -0.32
SQSTM1-205ENST00000464493 HSPB2A8KAH6 182 aa13.05□□□□□ -0.32
SQSTM1-205ENST00000464493 TPST1O60507 370 aa13.05□□□□□ -0.32
SQSTM1-205ENST00000464493 GCM2O75603 506 aaPredicted RBP13.05□□□□□ -0.32
SQSTM1-205ENST00000464493 MFN2O95140 757 aa13.05□□□□□ -0.32
SQSTM1-205ENST00000464493 CLDN14O95500 239 aa13.05□□□□□ -0.32
SQSTM1-205ENST00000464493 CHRNB4P30926 498 aa13.05□□□□□ -0.32
SQSTM1-205ENST00000464493 SFTPDP35247 375 aa13.05□□□□□ -0.32
SQSTM1-205ENST00000464493 SLC1A3P43003 542 aa13.05□□□□□ -0.32
SQSTM1-205ENST00000464493 EIF1AXP47813 144 aaKnown RBP13.05□□□□□ -0.32
SQSTM1-205ENST00000464493 COPZ1P61923 177 aa13.05□□□□□ -0.32
SQSTM1-205ENST00000464493 DMTNQ08495 405 aa13.05□□□□□ -0.32
SQSTM1-205ENST00000464493 HSPB2Q16082 182 aa13.05□□□□□ -0.32
SQSTM1-205ENST00000464493 CTU2Q2VPK5 515 aaKnown RBP13.05□□□□□ -0.32
SQSTM1-205ENST00000464493 TMEM176BQ3YBM2 270 aaPredicted RBP13.05□□□□□ -0.32
SQSTM1-205ENST00000464493 PDSS1Q5T2R2 415 aa13.05□□□□□ -0.32
SQSTM1-205ENST00000464493 C8orf82Q6P1X6 216 aaPredicted RBP13.05□□□□□ -0.32
SQSTM1-205ENST00000464493 ERICH5Q6P6B1 374 aa13.05□□□□□ -0.32
SQSTM1-205ENST00000464493 POMZP3Q6PJE2 187 aa13.05□□□□□ -0.32
SQSTM1-205ENST00000464493 DHRS4L2Q6PKH6 230 aa13.05□□□□□ -0.32
SQSTM1-205ENST00000464493 PLXDC2Q6UX71 529 aa13.05□□□□□ -0.32
SQSTM1-205ENST00000464493 PATL1Q86TB9 770 aaKnown RBP13.05□□□□□ -0.32
SQSTM1-205ENST00000464493 SLC15A3Q8IY34 581 aa13.05□□□□□ -0.32
SQSTM1-205ENST00000464493 C9orf106Q8NAJ2 232 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms