RNA–Protein interactions for RNA: ENST00000414829.2

LIMS1-206, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-206ENST00000414829 SYNGR4O95473 234 aa13.2□□□□□ -0.3
LIMS1-206ENST00000414829 CLDN14O95500 239 aa13.2□□□□□ -0.3
LIMS1-206ENST00000414829 NTN1O95631 604 aa13.2□□□□□ -0.3
LIMS1-206ENST00000414829 CRHP06850 196 aa13.2□□□□□ -0.3
LIMS1-206ENST00000414829 CD1EP15812 388 aa13.2□□□□□ -0.3
LIMS1-206ENST00000414829 STARP49675 285 aa13.2□□□□□ -0.3
LIMS1-206ENST00000414829 CLK1P49759 484 aaKnown RBP13.2□□□□□ -0.3
LIMS1-206ENST00000414829 RNF144AP50876 292 aaPredicted RBP13.2□□□□□ -0.3
LIMS1-206ENST00000414829 PCBP3P57721 371 aaKnown RBP13.2□□□□□ -0.3
LIMS1-206ENST00000414829 NUP107P57740 925 aa13.2□□□□□ -0.3
LIMS1-206ENST00000414829 SESN3P58005 492 aa13.2□□□□□ -0.3
LIMS1-206ENST00000414829 MERTKQ12866 999 aa13.2□□□□□ -0.3
LIMS1-206ENST00000414829 EPS8Q12929 822 aa13.2□□□□□ -0.3
LIMS1-206ENST00000414829 VEZF1Q14119 521 aa13.2□□□□□ -0.3
LIMS1-206ENST00000414829 ADRM1Q16186 407 aa13.2□□□□□ -0.3
LIMS1-206ENST00000414829 SGCBQ16585 318 aa13.2□□□□□ -0.3
LIMS1-206ENST00000414829 VMACQ2NL98 169 aa13.2□□□□□ -0.3
LIMS1-206ENST00000414829 SLC25A35Q3KQZ1 300 aa13.2□□□□□ -0.3
LIMS1-206ENST00000414829 RTL6Q6ICC9 239 aa13.2□□□□□ -0.3
LIMS1-206ENST00000414829 ZNF836Q6ZNA1 936 aa13.2□□□□□ -0.3
LIMS1-206ENST00000414829 MAMDC2Q7Z304 686 aaPredicted RBP13.2□□□□□ -0.3
LIMS1-206ENST00000414829 ADGRE4PQ86SQ3 457 aa13.2□□□□□ -0.3
LIMS1-206ENST00000414829 VRK2Q86Y07 508 aa13.2□□□□□ -0.3
LIMS1-206ENST00000414829 LILRA2Q8N149 483 aa13.2□□□□□ -0.3
LIMS1-206ENST00000414829 TNIP2Q8NFZ5 429 aa13.2□□□□□ -0.3
LIMS1-206ENST00000414829 OR2V1Q8NHB1 315 aa13.2□□□□□ -0.3
LIMS1-206ENST00000414829 CNOT9Q92600 299 aaKnown RBP13.2□□□□□ -0.3
LIMS1-206ENST00000414829 CPNE4Q96A23 557 aaPredicted RBP13.2□□□□□ -0.3
LIMS1-206ENST00000414829 SLC39A3Q9BRY0 314 aa13.2□□□□□ -0.3
LIMS1-206ENST00000414829 PINK1Q9BXM7 581 aa13.2□□□□□ -0.3
LIMS1-206ENST00000414829 CHST11Q9NPF2 352 aa13.2□□□□□ -0.3
LIMS1-206ENST00000414829 NUP214P35658 2090 aaPredicted RBP13.2□□□□□ -0.3
LIMS1-206ENST00000414829 GCN1Q92616 2671 aaKnown RBP13.19□□□□□ -0.3
LIMS1-206ENST00000414829 HIVEP3Q5T1R4 2406 aa13.19□□□□□ -0.3
LIMS1-206ENST00000414829 CLDN24A6NM45 220 aa13.19□□□□□ -0.3
LIMS1-206ENST00000414829 SYT5O00445 386 aa13.19□□□□□ -0.3
LIMS1-206ENST00000414829 EIF1AYO14602 144 aaKnown RBP13.19□□□□□ -0.3
LIMS1-206ENST00000414829 IL18BPO95998 194 aa13.19□□□□□ -0.3
LIMS1-206ENST00000414829 RYKP34925 604 aa13.19□□□□□ -0.3
LIMS1-206ENST00000414829 SLC1A3P43003 542 aa13.19□□□□□ -0.3
LIMS1-206ENST00000414829 POLR2HP52434 150 aaKnown RBP13.19□□□□□ -0.3
LIMS1-206ENST00000414829 RABL3Q5HYI8 236 aa13.19□□□□□ -0.3
LIMS1-206ENST00000414829 PLEKHM3Q6ZWE6 761 aa13.19□□□□□ -0.3
LIMS1-206ENST00000414829 PTOV1Q86YD1 416 aa13.19□□□□□ -0.3
LIMS1-206ENST00000414829 ZZZ3Q8IYH5 903 aa13.19□□□□□ -0.3
LIMS1-206ENST00000414829 MARVELD2Q8N4S9 558 aa13.19□□□□□ -0.3
LIMS1-206ENST00000414829 OR2T12Q8NG77 320 aa13.19□□□□□ -0.3
LIMS1-206ENST00000414829 OR5M1Q8NGP8 315 aa13.19□□□□□ -0.3
LIMS1-206ENST00000414829 SLC26A7Q8TE54 656 aa13.19□□□□□ -0.3
LIMS1-206ENST00000414829 PSMG3-AS1Q96PY0 264 aa13.19□□□□□ -0.3
LIMS1-206ENST00000414829 SFXN3Q9BWM7 321 aa13.19□□□□□ -0.3
LIMS1-206ENST00000414829 SPAG4Q9NPE6 437 aa13.19□□□□□ -0.3
LIMS1-206ENST00000414829 CLCF1Q9UBD9 225 aa13.19□□□□□ -0.3
LIMS1-206ENST00000414829 ZNF629Q9UEG4 869 aaPredicted RBP13.19□□□□□ -0.3
LIMS1-206ENST00000414829 TESQ9UGI8 421 aaKnown RBP13.19□□□□□ -0.3
LIMS1-206ENST00000414829 CHRNA9Q9UGM1 479 aa13.19□□□□□ -0.3
LIMS1-206ENST00000414829 TAGLN3Q9UI15 199 aa13.19□□□□□ -0.3
LIMS1-206ENST00000414829 LRRK2Q5S007 2527 aa13.19□□□□□ -0.3
LIMS1-206ENST00000414829 ZGRF1Q86YA3 2104 aa13.19□□□□□ -0.3
LIMS1-206ENST00000414829 DOPEY1Q5JWR5 2465 aa13.19□□□□□ -0.3
LIMS1-206ENST00000414829 NINQ8N4C6 2090 aa13.19□□□□□ -0.3
LIMS1-206ENST00000414829 C8BP07358 591 aa13.18□□□□□ -0.3
LIMS1-206ENST00000414829 AQP1P29972 269 aa13.18□□□□□ -0.3
LIMS1-206ENST00000414829 CEACAM8P31997 349 aaPredicted RBP13.18□□□□□ -0.3
LIMS1-206ENST00000414829 OPRM1P35372 400 aa13.18□□□□□ -0.3
LIMS1-206ENST00000414829 EIF1AXP47813 144 aaKnown RBP13.18□□□□□ -0.3
LIMS1-206ENST00000414829 IDH2P48735 452 aaKnown RBP13.18□□□□□ -0.3
LIMS1-206ENST00000414829 CLDN15P56746 228 aa13.18□□□□□ -0.3
LIMS1-206ENST00000414829 CLDN20P56880 219 aa13.18□□□□□ -0.3
LIMS1-206ENST00000414829 CSNK2A1P68400 391 aaPredicted RBP13.18□□□□□ -0.3
LIMS1-206ENST00000414829 SELPLGQ14242 412 aa13.18□□□□□ -0.3
LIMS1-206ENST00000414829 TOMM34Q15785 309 aaPredicted RBP13.18□□□□□ -0.3
LIMS1-206ENST00000414829 HBMQ6B0K9 141 aa13.18□□□□□ -0.3
LIMS1-206ENST00000414829 GTF2IRD2BQ6EKJ0 949 aa13.18□□□□□ -0.3
LIMS1-206ENST00000414829 WBP2NLQ6ICG8 309 aa13.18□□□□□ -0.3
LIMS1-206ENST00000414829 CCDC80Q76M96 950 aa13.18□□□□□ -0.3
LIMS1-206ENST00000414829 HMGN2P46Q86SG4 172 aa13.18□□□□□ -0.3
LIMS1-206ENST00000414829 GTF2IRD2Q86UP8 949 aa13.18□□□□□ -0.3
LIMS1-206ENST00000414829 GGNQ86UU5 652 aa13.18□□□□□ -0.3
LIMS1-206ENST00000414829 RANBP3LQ86VV4 465 aaPredicted RBP13.18□□□□□ -0.3
LIMS1-206ENST00000414829 CALHM3Q86XJ0 350 aa13.18□□□□□ -0.3
LIMS1-206ENST00000414829 TREML1Q86YW5 311 aa13.18□□□□□ -0.3
LIMS1-206ENST00000414829 C10orf111Q8N326 155 aa13.18□□□□□ -0.3
LIMS1-206ENST00000414829 OR10D3Q8NH80 312 aa13.18□□□□□ -0.3
LIMS1-206ENST00000414829 POC1BQ8TC44 478 aa13.18□□□□□ -0.3
LIMS1-206ENST00000414829 DDIT4LQ96D03 193 aa13.18□□□□□ -0.3
LIMS1-206ENST00000414829 ZHX1-C8orf76Q96EF9 292 aa13.18□□□□□ -0.3
LIMS1-206ENST00000414829 PRRG4Q9BZD6 226 aa13.18□□□□□ -0.3
LIMS1-206ENST00000414829 GLRX2Q9NS18 164 aa13.18□□□□□ -0.3
LIMS1-206ENST00000414829 RLIMQ9NVW2 624 aa13.18□□□□□ -0.3
LIMS1-206ENST00000414829 SELENONQ9NZV5 590 aa13.18□□□□□ -0.3
LIMS1-206ENST00000414829 RPS6KB2Q9UBS0 482 aa13.18□□□□□ -0.3
LIMS1-206ENST00000414829 RNF6Q9Y252 685 aa13.18□□□□□ -0.3
LIMS1-206ENST00000414829 HDGFL3Q9Y3E1 203 aa13.18□□□□□ -0.3
LIMS1-206ENST00000414829 ZNF407Q9C0G0 2248 aa13.17□□□□□ -0.3
LIMS1-206ENST00000414829 ELOVL7A1L3X0 281 aa13.17□□□□□ -0.3
LIMS1-206ENST00000414829 SHISA8B8ZZ34 492 aa13.17□□□□□ -0.3
LIMS1-206ENST00000414829 ZNF208O43345 1280 aa13.17□□□□□ -0.3
LIMS1-206ENST00000414829 DNPH1O43598 174 aa13.17□□□□□ -0.3
LIMS1-206ENST00000414829 MFN2O95140 757 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms