RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 PTHLHP12272 177 aa12.38□□□□□ -0.43
VPS54-203ENST00000409558 MYL9P24844 172 aa12.38□□□□□ -0.43
VPS54-203ENST00000409558 HOXD12P35452 270 aa12.38□□□□□ -0.43
VPS54-203ENST00000409558 QPRTQ15274 297 aa12.38□□□□□ -0.43
VPS54-203ENST00000409558 AGAP6Q5VW22 663 aa12.38□□□□□ -0.43
VPS54-203ENST00000409558 ZNF655Q8N720 491 aaPredicted RBP12.38□□□□□ -0.43
VPS54-203ENST00000409558 OR5J2Q8NH18 312 aa12.38□□□□□ -0.43
VPS54-203ENST00000409558 PHOSPHO1Q8TCT1 267 aa12.38□□□□□ -0.43
VPS54-203ENST00000409558 SFXN5Q8TD22 340 aa12.38□□□□□ -0.43
VPS54-203ENST00000409558 AGAP4Q96P64 663 aa12.38□□□□□ -0.43
VPS54-203ENST00000409558 ORAI3Q9BRQ5 295 aa12.38□□□□□ -0.43
VPS54-203ENST00000409558 HEATR5AQ86XA9 2040 aa12.38□□□□□ -0.43
VPS54-203ENST00000409558 CENPXA8MT69 81 aa12.38□□□□□ -0.43
VPS54-203ENST00000409558 GPANK1O95872 356 aa12.38□□□□□ -0.43
VPS54-203ENST00000409558 PLGP00747 810 aaPredicted RBP12.38□□□□□ -0.43
VPS54-203ENST00000409558 HLA-DPB1P04440 258 aa12.38□□□□□ -0.43
VPS54-203ENST00000409558 SYPP08247 313 aa12.38□□□□□ -0.43
VPS54-203ENST00000409558 RAB15P59190 212 aa12.38□□□□□ -0.43
VPS54-203ENST00000409558 ZNHIT3Q15649 155 aaPredicted RBP12.38□□□□□ -0.43
VPS54-203ENST00000409558 PTP4A1Q93096 173 aa12.38□□□□□ -0.43
VPS54-203ENST00000409558 RASD2Q96D21 266 aa12.38□□□□□ -0.43
VPS54-203ENST00000409558 SLC38A3Q99624 504 aa12.38□□□□□ -0.43
VPS54-203ENST00000409558 ARHGDIGQ99819 225 aa12.38□□□□□ -0.43
VPS54-203ENST00000409558 ARHGAP9Q9BRR9 750 aa12.38□□□□□ -0.43
VPS54-203ENST00000409558 ARRDC5A6NEK1 342 aa12.38□□□□□ -0.43
VPS54-203ENST00000409558 CPNE3O75131 537 aaKnown RBP12.38□□□□□ -0.43
VPS54-203ENST00000409558 CD3GP09693 182 aa12.38□□□□□ -0.43
VPS54-203ENST00000409558 FXYD6P3P58550 94 aa12.38□□□□□ -0.43
VPS54-203ENST00000409558 C3orf38Q5JPI3 329 aa12.38□□□□□ -0.43
VPS54-203ENST00000409558 ZNF322Q6U7Q0 402 aaPredicted RBP12.38□□□□□ -0.43
VPS54-203ENST00000409558 DNAJC5GQ8N7S2 189 aa12.38□□□□□ -0.43
VPS54-203ENST00000409558 ZDHHC1Q8WTX9 485 aa12.38□□□□□ -0.43
VPS54-203ENST00000409558 SNX33Q8WV41 574 aa12.38□□□□□ -0.43
VPS54-203ENST00000409558 DHRS1Q96LJ7 313 aa12.38□□□□□ -0.43
VPS54-203ENST00000409558 RMI1Q9H9A7 625 aa12.38□□□□□ -0.43
VPS54-203ENST00000409558 B3GAT2Q9NPZ5 323 aa12.38□□□□□ -0.43
VPS54-203ENST00000409558 FLRT3Q9NZU0 649 aa12.38□□□□□ -0.43
VPS54-203ENST00000409558 CDHR4A6H8M9 788 aa12.37□□□□□ -0.43
VPS54-203ENST00000409558 C2orf72A6NCS6 295 aa12.37□□□□□ -0.43
VPS54-203ENST00000409558 HCN1O60741 890 aa12.37□□□□□ -0.43
VPS54-203ENST00000409558 NDUFS1P28331 727 aa12.37□□□□□ -0.43
VPS54-203ENST00000409558 PRKAR1BP31321 381 aa12.37□□□□□ -0.43
VPS54-203ENST00000409558 KIR2DL3P43628 341 aa12.37□□□□□ -0.43
VPS54-203ENST00000409558 VASPP50552 380 aaPredicted RBP12.37□□□□□ -0.43
VPS54-203ENST00000409558 SFSWAPQ12872 951 aaKnown RBP12.37□□□□□ -0.43
VPS54-203ENST00000409558 KIR2DS3Q14952 304 aa12.37□□□□□ -0.43
VPS54-203ENST00000409558 SLC25A35Q3KQZ1 300 aa12.37□□□□□ -0.43
VPS54-203ENST00000409558 TTLL10Q6ZVT0 673 aa12.37□□□□□ -0.43
VPS54-203ENST00000409558 PRSS45Q7RTY3 260 aa12.37□□□□□ -0.43
VPS54-203ENST00000409558 SLC44A3Q8N4M1 653 aa12.37□□□□□ -0.43
VPS54-203ENST00000409558 ZNF321PQ8N8H1 164 aa12.37□□□□□ -0.43
VPS54-203ENST00000409558 ZNF671Q8TAW3 534 aa12.37□□□□□ -0.43
VPS54-203ENST00000409558 LMAN2LQ9H0V9 348 aa12.37□□□□□ -0.43
VPS54-203ENST00000409558 PIGUQ9H490 435 aa12.37□□□□□ -0.43
VPS54-203ENST00000409558 EXOSC1Q9Y3B2 195 aaKnown RBP12.37□□□□□ -0.43
VPS54-203ENST00000409558 TVP23AA6NH52 213 aa12.37□□□□□ -0.43
VPS54-203ENST00000409558 C11orf98E9PRG8 122 aa12.37□□□□□ -0.43
VPS54-203ENST00000409558 CSTAP01040 98 aa12.37□□□□□ -0.43
VPS54-203ENST00000409558 IGKV1D-16P01601 117 aa12.37□□□□□ -0.43
VPS54-203ENST00000409558 NGFRP08138 427 aa12.37□□□□□ -0.43
VPS54-203ENST00000409558 SNRPBP14678 240 aaKnown RBP12.37□□□□□ -0.43
VPS54-203ENST00000409558 FPR3P25089 353 aa12.37□□□□□ -0.43
VPS54-203ENST00000409558 UBXN2BQ14CS0 331 aa12.37□□□□□ -0.43
VPS54-203ENST00000409558 MLC1Q15049 377 aa12.37□□□□□ -0.43
VPS54-203ENST00000409558 ZSWIM7Q19AV6 140 aa12.37□□□□□ -0.43
VPS54-203ENST00000409558 TMEM201Q5SNT2 666 aa12.37□□□□□ -0.43
VPS54-203ENST00000409558 AADACL4Q5VUY2 407 aa12.37□□□□□ -0.43
VPS54-203ENST00000409558 ZNF511Q8NB15 262 aa12.37□□□□□ -0.43
VPS54-203ENST00000409558 OR5W2Q8NH69 310 aa12.37□□□□□ -0.43
VPS54-203ENST00000409558 ZPLD1Q8TCW7 415 aa12.37□□□□□ -0.43
VPS54-203ENST00000409558 PCNPQ8WW12 178 aaKnown RBP12.37□□□□□ -0.43
VPS54-203ENST00000409558 SENP5Q96HI0 755 aaPredicted RBP12.37□□□□□ -0.43
VPS54-203ENST00000409558 DZANK1Q9NVP4 752 aa12.37□□□□□ -0.43
VPS54-203ENST00000409558 IL20Q9NYY1 176 aa12.37□□□□□ -0.43
VPS54-203ENST00000409558 GPR89AB7ZAQ6 455 aa12.37□□□□□ -0.43
VPS54-203ENST00000409558 GPR89BP0CG08 455 aa12.37□□□□□ -0.43
VPS54-203ENST00000409558 ELK1P19419 428 aa12.37□□□□□ -0.43
VPS54-203ENST00000409558 STAT5AP42229 794 aa12.37□□□□□ -0.43
VPS54-203ENST00000409558 TIGD4Q8IY51 512 aa12.37□□□□□ -0.43
VPS54-203ENST00000409558 OR2L13Q8N349 312 aa12.37□□□□□ -0.43
VPS54-203ENST00000409558 MINDY2Q8NBR6 621 aa12.37□□□□□ -0.43
VPS54-203ENST00000409558 RCBTB1Q8NDN9 531 aa12.37□□□□□ -0.43
VPS54-203ENST00000409558 SLC25A36Q96CQ1 311 aa12.37□□□□□ -0.43
VPS54-203ENST00000409558 MRPL38Q96DV4 380 aaKnown RBP12.37□□□□□ -0.43
VPS54-203ENST00000409558 PRSS27Q9BQR3 290 aa12.37□□□□□ -0.43
VPS54-203ENST00000409558 TBX19O60806 448 aa12.36□□□□□ -0.43
VPS54-203ENST00000409558 NID1P14543 1247 aa12.36□□□□□ -0.43
VPS54-203ENST00000409558 NR2C2APQ86WQ0 139 aa12.36□□□□□ -0.43
VPS54-203ENST00000409558 MCATQ8IVS2 390 aaKnown RBP12.36□□□□□ -0.43
VPS54-203ENST00000409558 SMPDL3BQ92485 455 aa12.36□□□□□ -0.43
VPS54-203ENST00000409558 TEAD3Q99594 435 aa12.36□□□□□ -0.43
VPS54-203ENST00000409558 KLHDC3Q9BQ90 382 aa12.36□□□□□ -0.43
VPS54-203ENST00000409558 PILRAQ9UKJ1 303 aa12.36□□□□□ -0.43
VPS54-203ENST00000409558 A0A1B0GTH9 108 aa12.36□□□□□ -0.43
VPS54-203ENST00000409558 GTPBP1O00178 669 aaKnown RBP12.36□□□□□ -0.43
VPS54-203ENST00000409558 LANCL1O43813 399 aa12.36□□□□□ -0.43
VPS54-203ENST00000409558 HIST1H1CP16403 213 aaKnown RBP12.36□□□□□ -0.43
VPS54-203ENST00000409558 AHCYP23526 432 aa12.36□□□□□ -0.43
VPS54-203ENST00000409558 HTR3AP46098 478 aa12.36□□□□□ -0.43
VPS54-203ENST00000409558 DECR1Q16698 335 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms