RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 BOLA1Q9Y3E2 137 aa17.23■□□□□ 0.35
USP48-204ENST00000400301 CACNG2Q9Y698 323 aa17.23■□□□□ 0.35
USP48-204ENST00000400301 CPEP16870 476 aa17.22■□□□□ 0.35
USP48-204ENST00000400301 ZNF24P17028 368 aa17.22■□□□□ 0.35
USP48-204ENST00000400301 MAT1AQ00266 395 aaKnown RBP17.22■□□□□ 0.35
USP48-204ENST00000400301 ZNF322Q6U7Q0 402 aaPredicted RBP17.22■□□□□ 0.35
USP48-204ENST00000400301 METAP1DQ6UB28 335 aaPredicted RBP17.22■□□□□ 0.35
USP48-204ENST00000400301 TMEM151BQ8IW70 566 aa17.22■□□□□ 0.35
USP48-204ENST00000400301 DNAJC5GQ8N7S2 189 aa17.22■□□□□ 0.35
USP48-204ENST00000400301 DAZLQ92904 295 aaKnown RBP17.22■□□□□ 0.35
USP48-204ENST00000400301 NEDD4LQ96PU5 975 aa17.22■□□□□ 0.35
USP48-204ENST00000400301 PLEKHA1Q9HB21 404 aa17.22■□□□□ 0.35
USP48-204ENST00000400301 SEC16AO15027 2179 aa17.22■□□□□ 0.35
USP48-204ENST00000400301 RBBP9O75884 186 aa17.22■□□□□ 0.35
USP48-204ENST00000400301 KRT33AO76009 404 aa17.22■□□□□ 0.35
USP48-204ENST00000400301 LCN1P31025 176 aa17.22■□□□□ 0.35
USP48-204ENST00000400301 CTHP32929 405 aa17.22■□□□□ 0.35
USP48-204ENST00000400301 GRK5P34947 590 aa17.22■□□□□ 0.35
USP48-204ENST00000400301 TSPAN5P62079 268 aa17.22■□□□□ 0.35
USP48-204ENST00000400301 YPEL5P62699 121 aa17.22■□□□□ 0.35
USP48-204ENST00000400301 PPP2CBP62714 309 aa17.22■□□□□ 0.35
USP48-204ENST00000400301 PPP2CAP67775 309 aa17.22■□□□□ 0.35
USP48-204ENST00000400301 MPEG1Q2M385 716 aa17.22■□□□□ 0.35
USP48-204ENST00000400301 BAIAP2L2Q6UXY1 529 aa17.22■□□□□ 0.35
USP48-204ENST00000400301 ETFBKMTQ8IXQ9 262 aa17.22■□□□□ 0.35
USP48-204ENST00000400301 THAP3Q8WTV1 239 aaPredicted RBP17.22■□□□□ 0.35
USP48-204ENST00000400301 DEDD2Q8WXF8 326 aa17.22■□□□□ 0.35
USP48-204ENST00000400301 SEC61A2Q9H9S3 476 aa17.22■□□□□ 0.35
USP48-204ENST00000400301 PCBP4P57723 403 aaKnown RBP17.22■□□□□ 0.35
USP48-204ENST00000400301 SERTAD2Q14140 314 aa17.22■□□□□ 0.35
USP48-204ENST00000400301 NSDHLQ15738 373 aa17.22■□□□□ 0.35
USP48-204ENST00000400301 TCTE1Q5JU00 501 aa17.22■□□□□ 0.35
USP48-204ENST00000400301 C12orf73Q69YU5 71 aa17.22■□□□□ 0.35
USP48-204ENST00000400301 CEP76Q8TAP6 659 aa17.22■□□□□ 0.35
USP48-204ENST00000400301 GHSRQ92847 366 aa17.22■□□□□ 0.35
USP48-204ENST00000400301 HYLS1Q96M11 299 aa17.22■□□□□ 0.35
USP48-204ENST00000400301 NECTIN4Q96NY8 510 aa17.22■□□□□ 0.35
USP48-204ENST00000400301 PRDM7Q9NQW5 492 aa17.22■□□□□ 0.35
USP48-204ENST00000400301 GPATCH2Q9NW75 528 aa17.22■□□□□ 0.35
USP48-204ENST00000400301 POLHQ9Y253 713 aa17.22■□□□□ 0.35
USP48-204ENST00000400301 ZC3H12DA2A288 527 aaKnown RBP17.21■□□□□ 0.35
USP48-204ENST00000400301 H3BQ06 376 aaPredicted RBP17.21■□□□□ 0.35
USP48-204ENST00000400301 NID1P14543 1247 aa17.21■□□□□ 0.35
USP48-204ENST00000400301 HTR2BP41595 481 aa17.21■□□□□ 0.35
USP48-204ENST00000400301 RAB38P57729 211 aa17.21■□□□□ 0.35
USP48-204ENST00000400301 PSMA6P60900 246 aaKnown RBP17.21■□□□□ 0.35
USP48-204ENST00000400301 CDC20Q12834 499 aa17.21■□□□□ 0.35
USP48-204ENST00000400301 KCTD18Q6PI47 426 aaPredicted RBP17.21■□□□□ 0.35
USP48-204ENST00000400301 PEG10Q86TG7 708 aaKnown RBP17.21■□□□□ 0.35
USP48-204ENST00000400301 SERPINA12Q8IW75 414 aa17.21■□□□□ 0.35
USP48-204ENST00000400301 SDR16C5Q8N3Y7 309 aa17.21■□□□□ 0.35
USP48-204ENST00000400301 SUN5Q8TC36 379 aa17.21■□□□□ 0.35
USP48-204ENST00000400301 GPN3Q9UHW5 284 aaPredicted RBP17.21■□□□□ 0.35
USP48-204ENST00000400301 TBX19O60806 448 aa17.21■□□□□ 0.35
USP48-204ENST00000400301 AP2S1P53680 142 aaPredicted RBP17.21■□□□□ 0.35
USP48-204ENST00000400301 TMED4Q7Z7H5 227 aa17.21■□□□□ 0.35
USP48-204ENST00000400301 PAQR7Q86WK9 346 aa17.21■□□□□ 0.35
USP48-204ENST00000400301 MSLNLQ96KJ4 702 aa17.21■□□□□ 0.35
USP48-204ENST00000400301 MYADMQ96S97 322 aa17.21■□□□□ 0.35
USP48-204ENST00000400301 RANBP3Q9H6Z4 567 aaPredicted RBP17.21■□□□□ 0.35
USP48-204ENST00000400301 KLRF1Q9NZS2 232 aa17.21■□□□□ 0.35
USP48-204ENST00000400301 PPIEQ9UNP9 301 aaKnown RBP17.21■□□□□ 0.35
USP48-204ENST00000400301 C19orf53Q9UNZ5 99 aaPredicted RBP17.21■□□□□ 0.35
USP48-204ENST00000400301 SBF1O95248 1867 aa17.21■□□□□ 0.35
USP48-204ENST00000400301 FMO6PO60774 539 aa17.21■□□□□ 0.35
USP48-204ENST00000400301 EGFP01133 1207 aa17.21■□□□□ 0.35
USP48-204ENST00000400301 C1orf189Q5VU69 101 aa17.21■□□□□ 0.35
USP48-204ENST00000400301 BBS1Q8NFJ9 593 aa17.21■□□□□ 0.35
USP48-204ENST00000400301 RSPRY1Q96DX4 576 aa17.21■□□□□ 0.35
USP48-204ENST00000400301 KATNB1Q9BVA0 655 aa17.21■□□□□ 0.35
USP48-204ENST00000400301 ACTR6Q9GZN1 396 aa17.21■□□□□ 0.35
USP48-204ENST00000400301 HOXD1Q9GZZ0 328 aa17.21■□□□□ 0.35
USP48-204ENST00000400301 ASB6Q9NWX5 421 aa17.21■□□□□ 0.35
USP48-204ENST00000400301 CBLCQ9ULV8 474 aa17.21■□□□□ 0.35
USP48-204ENST00000400301 FXYD6-FXYD2A0A087WZ82 144 aa17.2■□□□□ 0.34
USP48-204ENST00000400301 CDHR4A6H8M9 788 aa17.2■□□□□ 0.34
USP48-204ENST00000400301 TVP23AA6NH52 213 aa17.2■□□□□ 0.34
USP48-204ENST00000400301 L7N2F9 121 aa17.2■□□□□ 0.34
USP48-204ENST00000400301 HBMQ6B0K9 141 aa17.2■□□□□ 0.34
USP48-204ENST00000400301 ZNF613Q6PF04 617 aa17.2■□□□□ 0.34
USP48-204ENST00000400301 OR8S1Q8NH09 359 aa17.2■□□□□ 0.34
USP48-204ENST00000400301 LRRC20Q8TCA0 184 aa17.2■□□□□ 0.34
USP48-204ENST00000400301 LRRC3BQ96PB8 259 aa17.2■□□□□ 0.34
USP48-204ENST00000400301 FXYD6Q9H0Q3 95 aa17.2■□□□□ 0.34
USP48-204ENST00000400301 SIRT3Q9NTG7 399 aaPredicted RBP17.2■□□□□ 0.34
USP48-204ENST00000400301 COPZ2Q9P299 210 aa17.2■□□□□ 0.34
USP48-204ENST00000400301 PFDN2Q9UHV9 154 aa17.2■□□□□ 0.34
USP48-204ENST00000400301 ZNF638Q14966 1978 aaKnown RBP17.2■□□□□ 0.34
USP48-204ENST00000400301 NYNRINQ9P2P1 1898 aaKnown RBP17.2■□□□□ 0.34
USP48-204ENST00000400301 I3L521 148 aa17.2■□□□□ 0.34
USP48-204ENST00000400301 FGF17O60258 216 aa17.2■□□□□ 0.34
USP48-204ENST00000400301 PGCP20142 388 aa17.2■□□□□ 0.34
USP48-204ENST00000400301 PXNP49023 591 aaPredicted RBP17.2■□□□□ 0.34
USP48-204ENST00000400301 MRPS21P82921 87 aaKnown RBP17.2■□□□□ 0.34
USP48-204ENST00000400301 MESP2Q0VG99 397 aa17.2■□□□□ 0.34
USP48-204ENST00000400301 ZG16BQ96DA0 208 aa17.2■□□□□ 0.34
USP48-204ENST00000400301 ADOQ96SZ5 270 aa17.2■□□□□ 0.34
USP48-204ENST00000400301 OR10A4Q9H209 315 aa17.2■□□□□ 0.34
USP48-204ENST00000400301 EXO5Q9H790 373 aa17.2■□□□□ 0.34
USP48-204ENST00000400301 SLC25A19Q9HC21 320 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms