RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 TBL1XR1Q9BZK7 514 aa6.33□□□□□ -1.4
LIMA1-202ENST00000394943 TRIM15Q9C019 465 aa6.33□□□□□ -1.4
LIMA1-202ENST00000394943 AMBRA1Q9C0C7 1298 aa6.33□□□□□ -1.4
LIMA1-202ENST00000394943 FAM107BQ9H098 131 aa6.33□□□□□ -1.4
LIMA1-202ENST00000394943 COQ10BQ9H8M1 238 aa6.33□□□□□ -1.4
LIMA1-202ENST00000394943 GMPR2Q9P2T1 348 aaKnown RBP6.33□□□□□ -1.4
LIMA1-202ENST00000394943 POMPQ9Y244 141 aa6.33□□□□□ -1.4
LIMA1-202ENST00000394943 A6NL46 340 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 M0QX08 132 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 CSTAP01040 98 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 RHCEP18577 417 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 SESN3P58005 492 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 SLC10A1Q14973 349 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 RTL6Q6ICC9 239 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 DNAJC14Q6Y2X3 702 aaPredicted RBP6.32□□□□□ -1.4
LIMA1-202ENST00000394943 TMEM45BQ96B21 275 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 OSBPL10Q9BXB5 764 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 DSN1Q9H410 356 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 PTGES2Q9H7Z7 377 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 NDUFAF4Q9P032 175 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 LIPGQ9Y5X9 500 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 ENPP4Q9Y6X5 453 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 PCNX3Q9H6A9 2034 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 LOC400499M0QZD8 3231 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 AP3D1O14617 1153 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 BMP7P18075 431 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 CA7P43166 264 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 ACTR3P61158 418 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 HPCAP84074 193 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 ALDH6A1Q02252 535 aaKnown RBP6.32□□□□□ -1.4
LIMA1-202ENST00000394943 COL9A2Q14055 689 aaPredicted RBP6.32□□□□□ -1.4
LIMA1-202ENST00000394943 ULK3Q6PHR2 472 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 CLDN22Q8N7P3 220 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 PNPT1Q8TCS8 783 aaKnown RBP6.32□□□□□ -1.4
LIMA1-202ENST00000394943 DUSP19Q8WTR2 217 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 MAGED4Q96JG8 741 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 HS6ST2Q96MM7 605 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 ZNF347Q96SE7 839 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 GPX7Q96SL4 187 aaPredicted RBP6.32□□□□□ -1.4
LIMA1-202ENST00000394943 TIMP4Q99727 224 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 GLRX2Q9NS18 164 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 ING1Q9UK53 422 aaPredicted RBP6.32□□□□□ -1.4
LIMA1-202ENST00000394943 SEC16AO15027 2179 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 PTPRQQ9UMZ3 2332 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 WISP1O95388 367 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 BGLAPP02818 100 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 GABRA1P14867 456 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 MAGEA5P43359 124 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 PRKCDQ05655 676 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 CCNIQ14094 377 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 QPRTQ15274 297 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 SF3B4Q15427 424 aaKnown RBP eCLIP6.32□□□□□ -1.4
LIMA1-202ENST00000394943 IFI44LQ53G44 452 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 FAM180AQ6UWF9 173 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 ESPNLQ6ZVH7 1005 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 SEM1Q6ZVN7 128 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 LINC00471Q8N535 108 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 SCAIQ8N9R8 606 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 FAM13CQ8NE31 585 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 ANKK1Q8NFD2 765 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 MFSD8Q8NHS3 518 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 FBXO30Q8TB52 745 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 ZNF300Q96RE9 604 aaPredicted RBP6.32□□□□□ -1.4
LIMA1-202ENST00000394943 EPYCQ99645 322 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 BCO1Q9HAY6 547 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 ADPRHL2Q9NX46 363 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 TAS2R10Q9NYW0 307 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 KLHL13Q9P2N7 655 aa6.32□□□□□ -1.4
LIMA1-202ENST00000394943 OR2M5A3KFT3 312 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 GJE1A6NN92 205 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 ZNF724A8MTY0 619 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 EBAG9O00559 213 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 SS18L1O75177 396 aaPredicted RBP6.31□□□□□ -1.4
LIMA1-202ENST00000394943 ZNF24P17028 368 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 GPR68Q15743 365 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 C3orf33Q6P1S2 294 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 ARHGAP11AQ6P4F7 1023 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 AAGABQ6PD74 315 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 ARSKQ6UWY0 536 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 LRRC75AQ8NAA5 344 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 OR6T1Q8NGN1 323 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 JADE3Q92613 823 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 SF3B5Q9BWJ5 86 aaKnown RBP6.31□□□□□ -1.4
LIMA1-202ENST00000394943 TRIM8Q9BZR9 551 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.31□□□□□ -1.4
LIMA1-202ENST00000394943 AGPAT4Q9NRZ5 378 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 KLRF1Q9NZS2 232 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 TRGV5A0A0B4J1U4 118 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 TMEM72A0PK05 275 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 TRAPPC13A5PLN9 417 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 E9PLN8 166 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 MT-ATP6P00846 226 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 UQCRBP14927 111 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 HK1P19367 917 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 DPP4P27487 766 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 OR1Q1Q15612 314 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 NNATQ16517 81 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 TMPRSS11FQ6ZWK6 438 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 ZNF627Q7L945 461 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 SLC46A3Q7Z3Q1 461 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms