RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 IL10RAQ13651 578 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 TRAM1Q15629 374 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 RPE65Q16518 533 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 UBE2NLQ5JXB2 153 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 MPP7Q5T2T1 576 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 HENMT1Q5T8I9 393 aaKnown RBP6.3□□□□□ -1.4
VPS39-202ENST00000348544 ZNF697Q5TEC3 545 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 KHDRBS2Q5VWX1 349 aaKnown RBP6.3□□□□□ -1.4
VPS39-202ENST00000348544 OLFML2AQ68BL7 652 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 C22orf39Q6P5X5 142 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 TMEM88Q6PEY1 159 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 Q6ZNB5 142 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 HTR3DQ70Z44 454 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 SLC24A5Q71RS6 500 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 FAM129CQ86XR2 697 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 GID4Q8IVV7 300 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 SERPINA12Q8IW75 414 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 PXT1Q8NFP0 134 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 BCL7CQ8WUZ0 217 aaPredicted RBP6.3□□□□□ -1.4
VPS39-202ENST00000348544 ACOT11Q8WXI4 607 aaPredicted RBP6.3□□□□□ -1.4
VPS39-202ENST00000348544 C16orf58Q96GQ5 468 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 PEX11GQ96HA9 241 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 GINS4Q9BRT9 223 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 PBX4Q9BYU1 374 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 CCDC86Q9H6F5 360 aaKnown RBP6.3□□□□□ -1.4
VPS39-202ENST00000348544 NDRG3Q9UGV2 375 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 MYO10Q9HD67 2058 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 DENND4CQ5VZ89 1909 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 A0A0G2JN53 185 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 TMEM272A0A1B0GTI8 110 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 ANKRD20A5PA0PJZ0 165 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 OR2W5A6NFC9 320 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 SNRPGP15A8MWD9 76 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 LINC00587B1AMM8 73 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 GABARAPH6UMI1 98 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 H7C2Y5 167 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 PYCARD-AS1I3L0S3 204 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 GPR31O00270 319 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 KIAA0355O15063 1070 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 PPM1DO15297 605 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 ZNF254O75437 659 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 CDC123O75794 336 aaPredicted RBP6.29□□□□□ -1.4
VPS39-202ENST00000348544 KRT33AO76009 404 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 AQP8O94778 261 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 NDUFB6O95139 128 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 ZIC2O95409 532 aaPredicted RBP6.29□□□□□ -1.4
VPS39-202ENST00000348544 EOMESO95936 686 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 IL5P05113 134 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 HMGN1P05114 100 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 NT5EP21589 574 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 NOS3P29474 1203 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 PTH2RP49190 550 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 MEOX2P50222 304 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 MECP2P51608 486 aaKnown RBP6.29□□□□□ -1.4
VPS39-202ENST00000348544 NRG3P56975 720 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 RPS11P62280 158 aaKnown RBP eCLIP6.29□□□□□ -1.4
VPS39-202ENST00000348544 SNRPD1P62314 119 aaKnown RBP6.29□□□□□ -1.4
VPS39-202ENST00000348544 ST3GAL3Q11203 375 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 LASP1Q14847 261 aaKnown RBP6.29□□□□□ -1.4
VPS39-202ENST00000348544 DECR1Q16698 335 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 ZNF528Q3MIS6 628 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 ZNF311Q5JNZ3 666 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 PRPF38BQ5VTL8 546 aaKnown RBP6.29□□□□□ -1.4
VPS39-202ENST00000348544 GDF7Q7Z4P5 450 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 TMEM150AQ86TG1 271 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 OR10K1Q8NGX5 313 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 ZNF671Q8TAW3 534 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 BRIX1Q8TDN6 353 aaKnown RBP6.29□□□□□ -1.4
VPS39-202ENST00000348544 PPP1R16AQ96I34 528 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 AMDHD1Q96NU7 426 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 CAMK1GQ96NX5 476 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 TEX12Q9BXU0 123 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 MS4A8Q9BY19 250 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 SLC19A3Q9BZV2 496 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 DNTTIP1Q9H147 329 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 SLC38A1Q9H2H9 487 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 ADGRL4Q9HBW9 690 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 SLC39A1Q9NY26 324 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 MED11Q9P086 117 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 CTSFQ9UBX1 484 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 FBXL4Q9UKA2 621 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 PLCL2Q9UPR0 1127 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 A0A1W2PS29 197 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 NAP1L6A6NFF2 107 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 BHLHE40O14503 412 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 ZNF749O43361 778 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 EIF4E2O60573 245 aaKnown RBP6.29□□□□□ -1.4
VPS39-202ENST00000348544 PRAMEF2O60811 474 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 KHDRBS3O75525 346 aaKnown RBP6.29□□□□□ -1.4
VPS39-202ENST00000348544 HMGN2P05204 90 aaKnown RBP6.29□□□□□ -1.4
VPS39-202ENST00000348544 GLAP06280 429 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 KHKP50053 298 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 RAB13P51153 203 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 DLX5P56178 289 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 DUSP2Q05923 314 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 SCRN3Q0VDG4 424 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 ZNF750Q32MQ0 723 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 FAM209BQ5JX69 171 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 HES5Q5TA89 166 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 FCRLBQ6BAA4 426 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms