RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 GP1BBP13224 206 aa20.07■□□□□ 0.8
SDC3-202ENST00000339394 EIF1P41567 113 aaKnown RBP20.07■□□□□ 0.8
SDC3-202ENST00000339394 ERFP50548 548 aa20.07■□□□□ 0.8
SDC3-202ENST00000339394 B3GALT5-AS1P59052 145 aa20.07■□□□□ 0.8
SDC3-202ENST00000339394 SLC25A53Q5H9E4 307 aa20.07■□□□□ 0.8
SDC3-202ENST00000339394 WBP2NLQ6ICG8 309 aa20.07■□□□□ 0.8
SDC3-202ENST00000339394 SPATA24Q86W54 205 aa20.07■□□□□ 0.8
SDC3-202ENST00000339394 GTPBP8Q8N3Z3 284 aaPredicted RBP20.07■□□□□ 0.8
SDC3-202ENST00000339394 CPT1CQ8TCG5 803 aa20.07■□□□□ 0.8
SDC3-202ENST00000339394 MRGPRX4Q96LA9 322 aa20.07■□□□□ 0.8
SDC3-202ENST00000339394 GPR137Q96N19 417 aa20.07■□□□□ 0.8
SDC3-202ENST00000339394 RAB3IPQ96QF0 476 aaPredicted RBP20.07■□□□□ 0.8
SDC3-202ENST00000339394 PIGQQ9BRB3 760 aa20.07■□□□□ 0.8
SDC3-202ENST00000339394 TRIM2Q9C040 744 aa20.07■□□□□ 0.8
SDC3-202ENST00000339394 PLSCR2Q9NRY7 297 aa20.07■□□□□ 0.8
SDC3-202ENST00000339394 SLC6A5Q9Y345 797 aa20.07■□□□□ 0.8
SDC3-202ENST00000339394 TRGV5A0A0B4J1U4 118 aa20.06■□□□□ 0.8
SDC3-202ENST00000339394 OR2M5A3KFT3 312 aa20.06■□□□□ 0.8
SDC3-202ENST00000339394 C7orf72A4D263 438 aa20.06■□□□□ 0.8
SDC3-202ENST00000339394 ANKRD65E5RJM6 399 aa20.06■□□□□ 0.8
SDC3-202ENST00000339394 SEMG1P04279 462 aa20.06■□□□□ 0.8
SDC3-202ENST00000339394 PSMA4P25789 261 aaKnown RBP20.06■□□□□ 0.8
SDC3-202ENST00000339394 ADH6P28332 368 aa20.06■□□□□ 0.8
SDC3-202ENST00000339394 TDGF1P3P51864 188 aa20.06■□□□□ 0.8
SDC3-202ENST00000339394 GFRA1P56159 465 aa20.06■□□□□ 0.8
SDC3-202ENST00000339394 DLX5P56178 289 aa20.06■□□□□ 0.8
SDC3-202ENST00000339394 OR1Q1Q15612 314 aa20.06■□□□□ 0.8
SDC3-202ENST00000339394 SOWAHCQ53LP3 525 aaPredicted RBP20.06■□□□□ 0.8
SDC3-202ENST00000339394 KRTCAP3Q53RY4 240 aa20.06■□□□□ 0.8
SDC3-202ENST00000339394 DEF8Q6ZN54 512 aa20.06■□□□□ 0.8
SDC3-202ENST00000339394 TRILQ7L0X0 811 aa20.06■□□□□ 0.8
SDC3-202ENST00000339394 TSPYL5Q86VY4 417 aaPredicted RBP20.06■□□□□ 0.8
SDC3-202ENST00000339394 NEIL3Q8TAT5 605 aa20.06■□□□□ 0.8
SDC3-202ENST00000339394 PHF10Q8WUB8 498 aaKnown RBP20.06■□□□□ 0.8
SDC3-202ENST00000339394 POP5Q969H6 163 aaKnown RBP20.06■□□□□ 0.8
SDC3-202ENST00000339394 C7orf34Q96L11 122 aa20.06■□□□□ 0.8
SDC3-202ENST00000339394 SEPHS2Q99611 448 aa20.06■□□□□ 0.8
SDC3-202ENST00000339394 ADAM19Q9H013 955 aa20.06■□□□□ 0.8
SDC3-202ENST00000339394 TMEM27Q9HBJ8 222 aa20.06■□□□□ 0.8
SDC3-202ENST00000339394 CTPS2Q9NRF8 586 aa20.06■□□□□ 0.8
SDC3-202ENST00000339394 SUSD5O60279 629 aa20.05■□□□□ 0.8
SDC3-202ENST00000339394 HCN1O60741 890 aa20.05■□□□□ 0.8
SDC3-202ENST00000339394 ZNF17P17021 662 aa20.05■□□□□ 0.8
SDC3-202ENST00000339394 ENTPD8Q5MY95 495 aa20.05■□□□□ 0.8
SDC3-202ENST00000339394 GRINAQ7Z429 371 aa20.05■□□□□ 0.8
SDC3-202ENST00000339394 TSEN54Q7Z6J9 526 aaKnown RBP20.05■□□□□ 0.8
SDC3-202ENST00000339394 SFXN2Q96NB2 322 aa20.05■□□□□ 0.8
SDC3-202ENST00000339394 UGT2B28Q9BY64 529 aa20.05■□□□□ 0.8
SDC3-202ENST00000339394 CPSF4LA6NMK7 179 aaKnown RBP20.04■□□□□ 0.8
SDC3-202ENST00000339394 TACR3P29371 465 aa20.04■□□□□ 0.8
SDC3-202ENST00000339394 VLDLRP98155 873 aa20.04■□□□□ 0.8
SDC3-202ENST00000339394 HSF1Q00613 529 aa20.04■□□□□ 0.8
SDC3-202ENST00000339394 MERTKQ12866 999 aa20.04■□□□□ 0.8
SDC3-202ENST00000339394 PLEKHM3Q6ZWE6 761 aa20.04■□□□□ 0.8
SDC3-202ENST00000339394 ADAMTS16Q8TE57 1224 aa20.04■□□□□ 0.8
SDC3-202ENST00000339394 CANT1Q8WVQ1 401 aa20.04■□□□□ 0.8
SDC3-202ENST00000339394 C3orf49Q96BT1 292 aa20.04■□□□□ 0.8
SDC3-202ENST00000339394 SLC47A1Q96FL8 570 aa20.04■□□□□ 0.8
SDC3-202ENST00000339394 EXO5Q9H790 373 aa20.04■□□□□ 0.8
SDC3-202ENST00000339394 IL1RAPQ9NPH3 570 aa20.04■□□□□ 0.8
SDC3-202ENST00000339394 RALYQ9UKM9 306 aaKnown RBP20.04■□□□□ 0.8
SDC3-202ENST00000339394 ZNF337Q9Y3M9 751 aa20.04■□□□□ 0.8
SDC3-202ENST00000339394 CFAP46Q8IYW2 2715 aa20.04■□□□□ 0.8
SDC3-202ENST00000339394 CHD6Q8TD26 2715 aa20.04■□□□□ 0.8
SDC3-202ENST00000339394 A0A1B0GVC2 190 aa20.04■□□□□ 0.8
SDC3-202ENST00000339394 A0A1B0GWA3 101 aa20.04■□□□□ 0.8
SDC3-202ENST00000339394 TCRBV3S1A0A5B6 114 aa20.04■□□□□ 0.8
SDC3-202ENST00000339394 DHRS12A0PJE2 317 aa20.04■□□□□ 0.8
SDC3-202ENST00000339394 RRP9O43818 475 aaKnown RBP20.04■□□□□ 0.8
SDC3-202ENST00000339394 EFNA2O43921 213 aa20.04■□□□□ 0.8
SDC3-202ENST00000339394 IL11P20809 199 aa20.04■□□□□ 0.8
SDC3-202ENST00000339394 HTR3AP46098 478 aa20.04■□□□□ 0.8
SDC3-202ENST00000339394 YAP1P46937 504 aaKnown RBP20.04■□□□□ 0.8
SDC3-202ENST00000339394 PIN1Q13526 163 aaPredicted RBP20.04■□□□□ 0.8
SDC3-202ENST00000339394 ARHGAP11AQ6P4F7 1023 aa20.04■□□□□ 0.8
SDC3-202ENST00000339394 AAGABQ6PD74 315 aa20.04■□□□□ 0.8
SDC3-202ENST00000339394 POMZP3Q6PJE2 187 aa20.04■□□□□ 0.8
SDC3-202ENST00000339394 ADGRG5Q8IZF4 528 aa20.04■□□□□ 0.8
SDC3-202ENST00000339394 NDUFAF4Q9P032 175 aa20.04■□□□□ 0.8
SDC3-202ENST00000339394 TNFRSF10DQ9UBN6 386 aa20.04■□□□□ 0.8
SDC3-202ENST00000339394 RPS6KB2Q9UBS0 482 aa20.04■□□□□ 0.8
SDC3-202ENST00000339394 OSGIN1Q9UJX0 560 aa20.04■□□□□ 0.8
SDC3-202ENST00000339394 A0A0B4J2E0 115 aa20.03■□□□□ 0.8
SDC3-202ENST00000339394 A0A1B0GTH9 108 aa20.03■□□□□ 0.8
SDC3-202ENST00000339394 A0A1B0GX12 115 aa20.03■□□□□ 0.8
SDC3-202ENST00000339394 J3KTA2 159 aa20.03■□□□□ 0.8
SDC3-202ENST00000339394 hCG_2039718K7EN88 272 aa20.03■□□□□ 0.8
SDC3-202ENST00000339394 UMPSP11172 480 aa20.03■□□□□ 0.8
SDC3-202ENST00000339394 CHMP24386 653 aa20.03■□□□□ 0.8
SDC3-202ENST00000339394 APOBEC1P41238 236 aaKnown RBP20.03■□□□□ 0.8
SDC3-202ENST00000339394 POLR2HP52434 150 aaKnown RBP20.03■□□□□ 0.8
SDC3-202ENST00000339394 CCNIQ14094 377 aa20.03■□□□□ 0.8
SDC3-202ENST00000339394 IQCCQ4KMZ1 466 aa20.03■□□□□ 0.8
SDC3-202ENST00000339394 FAM98BQ52LJ0 330 aaKnown RBP20.03■□□□□ 0.8
SDC3-202ENST00000339394 NHSL2Q5HYW2 709 aa20.03■□□□□ 0.8
SDC3-202ENST00000339394 ZNF613Q6PF04 617 aa20.03■□□□□ 0.8
SDC3-202ENST00000339394 ULK3Q6PHR2 472 aa20.03■□□□□ 0.8
SDC3-202ENST00000339394 LSRQ86X29 649 aaPredicted RBP20.03■□□□□ 0.8
SDC3-202ENST00000339394 ADGRG3Q86Y34 549 aa20.03■□□□□ 0.8
SDC3-202ENST00000339394 GHDCQ8N2G8 530 aa20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms