RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 DSPPQ9NZW4 1301 aa12.61□□□□□ -0.39
LIMS1-201ENST00000332345 HCFC1P51610 2035 aa12.61□□□□□ -0.39
LIMS1-201ENST00000332345 SETXQ7Z333 2677 aaKnown RBP12.6□□□□□ -0.39
LIMS1-201ENST00000332345 LOC100653049A0A140TA62 436 aa12.6□□□□□ -0.39
LIMS1-201ENST00000332345 NKX2-6A6NCS4 301 aa12.6□□□□□ -0.39
LIMS1-201ENST00000332345 CFAP73A6NFT4 308 aa12.6□□□□□ -0.39
LIMS1-201ENST00000332345 FBP2O00757 339 aa12.6□□□□□ -0.39
LIMS1-201ENST00000332345 EFNA2O43921 213 aa12.6□□□□□ -0.39
LIMS1-201ENST00000332345 KRT34O76011 436 aa12.6□□□□□ -0.39
LIMS1-201ENST00000332345 SYNGR4O95473 234 aa12.6□□□□□ -0.39
LIMS1-201ENST00000332345 NTN1O95631 604 aa12.6□□□□□ -0.39
LIMS1-201ENST00000332345 TGM6O95932 706 aa12.6□□□□□ -0.39
LIMS1-201ENST00000332345 OPN1LWP04000 364 aa12.6□□□□□ -0.39
LIMS1-201ENST00000332345 CRHP06850 196 aa12.6□□□□□ -0.39
LIMS1-201ENST00000332345 ARAFP10398 606 aa12.6□□□□□ -0.39
LIMS1-201ENST00000332345 ETS2P15036 469 aa12.6□□□□□ -0.39
LIMS1-201ENST00000332345 APOBEC1P41238 236 aaKnown RBP12.6□□□□□ -0.39
LIMS1-201ENST00000332345 HTR3AP46098 478 aa12.6□□□□□ -0.39
LIMS1-201ENST00000332345 ZNF136P52737 540 aa12.6□□□□□ -0.39
LIMS1-201ENST00000332345 SEC24CP53992 1094 aa12.6□□□□□ -0.39
LIMS1-201ENST00000332345 CDK6Q00534 326 aa12.6□□□□□ -0.39
LIMS1-201ENST00000332345 MERTKQ12866 999 aa12.6□□□□□ -0.39
LIMS1-201ENST00000332345 SELENBP1Q13228 472 aa12.6□□□□□ -0.39
LIMS1-201ENST00000332345 TMEM176BQ3YBM2 270 aaPredicted RBP12.6□□□□□ -0.39
LIMS1-201ENST00000332345 ZNF311Q5JNZ3 666 aa12.6□□□□□ -0.39
LIMS1-201ENST00000332345 HBMQ6B0K9 141 aa12.6□□□□□ -0.39
LIMS1-201ENST00000332345 HIST2H2BCQ6DN03 193 aa12.6□□□□□ -0.39
LIMS1-201ENST00000332345 GTF2IRD2BQ6EKJ0 949 aa12.6□□□□□ -0.39
LIMS1-201ENST00000332345 GTF2IRD2Q86UP8 949 aa12.6□□□□□ -0.39
LIMS1-201ENST00000332345 VRK2Q86Y07 508 aa12.6□□□□□ -0.39
LIMS1-201ENST00000332345 PCYOX1LQ8NBM8 494 aa12.6□□□□□ -0.39
LIMS1-201ENST00000332345 NAXEQ8NCW5 288 aa12.6□□□□□ -0.39
LIMS1-201ENST00000332345 ATP6V1C2Q8NEY4 427 aa12.6□□□□□ -0.39
LIMS1-201ENST00000332345 OR10D3Q8NH80 312 aa12.6□□□□□ -0.39
LIMS1-201ENST00000332345 OR2V1Q8NHB1 315 aa12.6□□□□□ -0.39
LIMS1-201ENST00000332345 NFKBIDQ8NI38 313 aa12.6□□□□□ -0.39
LIMS1-201ENST00000332345 OSTF1Q92882 214 aa12.6□□□□□ -0.39
LIMS1-201ENST00000332345 INTS12Q96CB8 462 aaKnown RBP12.6□□□□□ -0.39
LIMS1-201ENST00000332345 KLHL15Q96M94 604 aa12.6□□□□□ -0.39
LIMS1-201ENST00000332345 ZNF607Q96SK3 696 aa12.6□□□□□ -0.39
LIMS1-201ENST00000332345 CPPED1Q9BRF8 314 aaPredicted RBP12.6□□□□□ -0.39
LIMS1-201ENST00000332345 SPATA5L1Q9BVQ7 753 aa12.6□□□□□ -0.39
LIMS1-201ENST00000332345 SFXN3Q9BWM7 321 aa12.6□□□□□ -0.39
LIMS1-201ENST00000332345 SPATA9Q9BWV2 254 aa12.6□□□□□ -0.39
LIMS1-201ENST00000332345 TMEM185BQ9H7F4 350 aa12.6□□□□□ -0.39
LIMS1-201ENST00000332345 GID8Q9NWU2 228 aa12.6□□□□□ -0.39
LIMS1-201ENST00000332345 DNAJB12Q9NXW2 375 aaKnown RBP12.6□□□□□ -0.39
LIMS1-201ENST00000332345 MCTS1Q9ULC4 181 aaKnown RBP12.6□□□□□ -0.39
LIMS1-201ENST00000332345 A0A0J9YW62 118 aa12.59□□□□□ -0.39
LIMS1-201ENST00000332345 CDHR4A6H8M9 788 aa12.59□□□□□ -0.39
LIMS1-201ENST00000332345 TNFSF11O14788 317 aa12.59□□□□□ -0.39
LIMS1-201ENST00000332345 HNRNPRO43390 633 aaKnown RBP12.59□□□□□ -0.39
LIMS1-201ENST00000332345 BCAS1O75363 584 aaPredicted RBP12.59□□□□□ -0.39
LIMS1-201ENST00000332345 PABPC4LP0CB38 370 aaKnown RBP12.59□□□□□ -0.39
LIMS1-201ENST00000332345 FCGR2AP12318 317 aa12.59□□□□□ -0.39
LIMS1-201ENST00000332345 COX6B1P14854 86 aa12.59□□□□□ -0.39
LIMS1-201ENST00000332345 IL11P20809 199 aa12.59□□□□□ -0.39
LIMS1-201ENST00000332345 SFTPDP35247 375 aa12.59□□□□□ -0.39
LIMS1-201ENST00000332345 IDH2P48735 452 aaKnown RBP12.59□□□□□ -0.39
LIMS1-201ENST00000332345 RBBP4Q09028 425 aa12.59□□□□□ -0.39
LIMS1-201ENST00000332345 SCARB2Q14108 478 aa12.59□□□□□ -0.39
LIMS1-201ENST00000332345 PON3Q15166 354 aa12.59□□□□□ -0.39
LIMS1-201ENST00000332345 TRMT5Q32P41 509 aaKnown RBP12.59□□□□□ -0.39
LIMS1-201ENST00000332345 RPS26P11Q5JNZ5 115 aaPredicted RBP12.59□□□□□ -0.39
LIMS1-201ENST00000332345 RNF220Q5VTB9 566 aa12.59□□□□□ -0.39
LIMS1-201ENST00000332345 PLEKHM3Q6ZWE6 761 aa12.59□□□□□ -0.39
LIMS1-201ENST00000332345 ZNF550Q7Z398 422 aa12.59□□□□□ -0.39
LIMS1-201ENST00000332345 GRINAQ7Z429 371 aa12.59□□□□□ -0.39
LIMS1-201ENST00000332345 C11orf65Q8NCR3 313 aa12.59□□□□□ -0.39
LIMS1-201ENST00000332345 HIPK4Q8NE63 616 aa12.59□□□□□ -0.39
LIMS1-201ENST00000332345 RP9Q8TA86 221 aaKnown RBP12.59□□□□□ -0.39
LIMS1-201ENST00000332345 LRRC58Q96CX6 371 aa12.59□□□□□ -0.39
LIMS1-201ENST00000332345 REXO5Q96IC2 774 aaKnown RBP12.59□□□□□ -0.39
LIMS1-201ENST00000332345 ZNF845Q96IR2 970 aaPredicted RBP12.59□□□□□ -0.39
LIMS1-201ENST00000332345 ADGRG7Q96K78 797 aa12.59□□□□□ -0.39
LIMS1-201ENST00000332345 SPOCK3Q9BQ16 436 aa12.59□□□□□ -0.39
LIMS1-201ENST00000332345 FAM107BQ9H098 131 aa12.59□□□□□ -0.39
LIMS1-201ENST00000332345 IKZF5Q9H5V7 419 aa12.59□□□□□ -0.39
LIMS1-201ENST00000332345 RLIMQ9NVW2 624 aa12.59□□□□□ -0.39
LIMS1-201ENST00000332345 ZNF443Q9Y2A4 671 aaPredicted RBP12.59□□□□□ -0.39
LIMS1-201ENST00000332345 SPIN1Q9Y657 262 aaPredicted RBP12.59□□□□□ -0.39
LIMS1-201ENST00000332345 PKDREJQ9NTG1 2253 aa12.58□□□□□ -0.4
LIMS1-201ENST00000332345 SYT5O00445 386 aa12.58□□□□□ -0.4
LIMS1-201ENST00000332345 FAAHO00519 579 aa12.58□□□□□ -0.4
LIMS1-201ENST00000332345 MRASO14807 208 aa12.58□□□□□ -0.4
LIMS1-201ENST00000332345 CXCL13O43927 109 aa12.58□□□□□ -0.4
LIMS1-201ENST00000332345 SERPINB7O75635 380 aa12.58□□□□□ -0.4
LIMS1-201ENST00000332345 SLC7A1P30825 629 aa12.58□□□□□ -0.4
LIMS1-201ENST00000332345 SLC1A3P43003 542 aa12.58□□□□□ -0.4
LIMS1-201ENST00000332345 MAP2K6P52564 334 aa12.58□□□□□ -0.4
LIMS1-201ENST00000332345 AGFG1P52594 562 aaKnown RBP12.58□□□□□ -0.4
LIMS1-201ENST00000332345 GYS2P54840 703 aa12.58□□□□□ -0.4
LIMS1-201ENST00000332345 DLX5P56178 289 aa12.58□□□□□ -0.4
LIMS1-201ENST00000332345 MTPNP58546 118 aa12.58□□□□□ -0.4
LIMS1-201ENST00000332345 COPZ1P61923 177 aa12.58□□□□□ -0.4
LIMS1-201ENST00000332345 GNGT1P63211 74 aa12.58□□□□□ -0.4
LIMS1-201ENST00000332345 CACNA1DQ01668 2161 aa12.58□□□□□ -0.4
LIMS1-201ENST00000332345 TFF3Q07654 80 aa12.58□□□□□ -0.4
LIMS1-201ENST00000332345 EPS8Q12929 822 aa12.58□□□□□ -0.4
LIMS1-201ENST00000332345 FOXF2Q12947 444 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms