RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 TSFMP43897 325 aaKnown RBP9.28□□□□□ -0.92
COL6A3-201ENST00000295550 TMEM115Q12893 351 aaPredicted RBP9.28□□□□□ -0.92
COL6A3-201ENST00000295550 DOC2AQ14183 400 aa9.28□□□□□ -0.92
COL6A3-201ENST00000295550 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.28□□□□□ -0.92
COL6A3-201ENST00000295550 PRR18Q8N4B5 295 aa9.28□□□□□ -0.92
COL6A3-201ENST00000295550 ACVR1CQ8NER5 493 aa9.28□□□□□ -0.92
COL6A3-201ENST00000295550 TSTD1Q8NFU3 115 aa9.28□□□□□ -0.92
COL6A3-201ENST00000295550 OR56B4Q8NH76 319 aa9.28□□□□□ -0.92
COL6A3-201ENST00000295550 NPRL2Q8WTW4 380 aa9.28□□□□□ -0.92
COL6A3-201ENST00000295550 ATOH8Q96SQ7 321 aa9.28□□□□□ -0.92
COL6A3-201ENST00000295550 NIPSNAP3BQ9BS92 247 aa9.28□□□□□ -0.92
COL6A3-201ENST00000295550 NAA11Q9BSU3 229 aaPredicted RBP9.28□□□□□ -0.92
COL6A3-201ENST00000295550 C2orf72A6NCS6 295 aa9.28□□□□□ -0.92
COL6A3-201ENST00000295550 HLA-HP01893 362 aa9.28□□□□□ -0.92
COL6A3-201ENST00000295550 OR10K2Q6IF99 312 aa9.28□□□□□ -0.92
COL6A3-201ENST00000295550 FAM111BQ6SJ93 734 aa9.28□□□□□ -0.92
COL6A3-201ENST00000295550 GDPGP1Q6ZNW5 385 aa9.28□□□□□ -0.92
COL6A3-201ENST00000295550 GAB3Q8WWW8 586 aa9.28□□□□□ -0.92
COL6A3-201ENST00000295550 MUL1Q969V5 352 aa9.28□□□□□ -0.92
COL6A3-201ENST00000295550 HMX2A2RU54 273 aa9.28□□□□□ -0.92
COL6A3-201ENST00000295550 GKP32189 559 aa9.28□□□□□ -0.92
COL6A3-201ENST00000295550 DCTP40126 519 aa9.28□□□□□ -0.92
COL6A3-201ENST00000295550 SUOXP51687 545 aa9.28□□□□□ -0.92
COL6A3-201ENST00000295550 CXCR4P61073 352 aa9.28□□□□□ -0.92
COL6A3-201ENST00000295550 CTSL3PQ5NE16 218 aa9.28□□□□□ -0.92
COL6A3-201ENST00000295550 SPARTQ8N0X7 666 aa9.28□□□□□ -0.92
COL6A3-201ENST00000295550 OR2T4Q8NH00 348 aa9.28□□□□□ -0.92
COL6A3-201ENST00000295550 HPSE2Q8WWQ2 592 aa9.28□□□□□ -0.92
COL6A3-201ENST00000295550 MED30Q96HR3 178 aa9.28□□□□□ -0.92
COL6A3-201ENST00000295550 ACTRT3Q9BYD9 372 aa9.28□□□□□ -0.92
COL6A3-201ENST00000295550 ALPLP05186 524 aa9.27□□□□□ -0.92
COL6A3-201ENST00000295550 C1GALT1C1LP0DN25 315 aa9.27□□□□□ -0.92
COL6A3-201ENST00000295550 CYBAP13498 195 aa9.27□□□□□ -0.92
COL6A3-201ENST00000295550 VEZF1Q14119 521 aa9.27□□□□□ -0.92
COL6A3-201ENST00000295550 SFRP5Q5T4F7 317 aa9.27□□□□□ -0.92
COL6A3-201ENST00000295550 METAP1DQ6UB28 335 aaPredicted RBP9.27□□□□□ -0.92
COL6A3-201ENST00000295550 CREB3L2Q70SY1 520 aa9.27□□□□□ -0.92
COL6A3-201ENST00000295550 TMEM200AQ86VY9 491 aa9.27□□□□□ -0.92
COL6A3-201ENST00000295550 CCDC116Q8IYX3 515 aa9.27□□□□□ -0.92
COL6A3-201ENST00000295550 B3GNT7Q8NFL0 401 aa9.27□□□□□ -0.92
COL6A3-201ENST00000295550 HHATLQ9HCP6 504 aa9.27□□□□□ -0.92
COL6A3-201ENST00000295550 KLHL42Q9P2K6 505 aa9.27□□□□□ -0.92
COL6A3-201ENST00000295550 SHANK1Q9Y566 2161 aa9.27□□□□□ -0.92
COL6A3-201ENST00000295550 NPIPA7E9PJI5 369 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 ANGPTL7O43827 346 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 DFFBO76075 338 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 NPIPA8P0DM63 369 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 HRH2P25021 359 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 HOXC13P31276 330 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 CNR2P34972 360 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 SQSTM1Q13501 440 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 TTLL10Q6ZVT0 673 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 LILRA2Q8N149 483 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 LRRC46Q96FV0 321 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 FCRL1Q96LA6 429 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 MRI1Q9BV20 369 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 NCDNQ9UBB6 729 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 RAB3AP20336 220 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 TAS2R46P59540 309 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 NNATQ16517 81 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 RPS26P11Q5JNZ5 115 aaPredicted RBP9.27□□□□□ -0.93
COL6A3-201ENST00000295550 TMEM164Q5U3C3 297 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 FCRLBQ6BAA4 426 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 LACC1Q8IV20 430 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 SCLYQ96I15 445 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 HHIPL1Q96JK4 782 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 RNF170Q96K19 258 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 PITHD1Q9GZP4 211 aaPredicted RBP9.27□□□□□ -0.93
COL6A3-201ENST00000295550 FBXL12Q9NXK8 326 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 CBY1Q9Y3M2 126 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 CBY3A6NI87 242 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 ANHXE9PGG2 379 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 SERPINA5P05154 406 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 LAMP1P11279 417 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 IMPA1P29218 277 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 MMP12P39900 470 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 P2RY14Q15391 338 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 CPZQ66K79 652 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 ZNF440Q8IYI8 595 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 MDGA1Q8NFP4 955 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 BOCQ9BWV1 1114 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 NMNAT2Q9BZQ4 307 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 METTL17Q9H7H0 456 aaPredicted RBP9.27□□□□□ -0.93
COL6A3-201ENST00000295550 NOX3Q9HBY0 568 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 RAB9BQ9NP90 201 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 VAPAQ9P0L0 249 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 TP53P04637 393 aaPredicted RBP9.27□□□□□ -0.93
COL6A3-201ENST00000295550 KLK3P07288 261 aaPredicted RBP9.27□□□□□ -0.93
COL6A3-201ENST00000295550 HLA-DMAP28067 261 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 STK19P49842 368 aaPredicted RBP9.27□□□□□ -0.93
COL6A3-201ENST00000295550 ZNF776Q68DI1 518 aaPredicted RBP9.27□□□□□ -0.93
COL6A3-201ENST00000295550 OGFOD3Q6PK18 319 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 GIMAP1Q8WWP7 306 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 ACPTQ9BZG2 426 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 MRPS17Q9Y2R5 130 aaKnown RBP9.27□□□□□ -0.93
COL6A3-201ENST00000295550 CPED1A4D0V7 1026 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 C2orf78A6NCI8 922 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 SRPX2O60687 465 aaPredicted RBP9.27□□□□□ -0.93
COL6A3-201ENST00000295550 TAP2Q03519 686 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 ENTHD1Q8IYW4 607 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms