RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 ARF1P84077 181 aaKnown RBP10.06□□□□□ -0.8
CD44-201ENST00000263398 ACVR1Q04771 509 aa10.06□□□□□ -0.8
CD44-201ENST00000263398 WBP2NLQ6ICG8 309 aa10.06□□□□□ -0.8
CD44-201ENST00000263398 MTFR2Q6P444 385 aa10.06□□□□□ -0.8
CD44-201ENST00000263398 RPL22L1Q6P5R6 122 aaKnown RBP10.06□□□□□ -0.8
CD44-201ENST00000263398 ENTHD1Q8IYW4 607 aa10.06□□□□□ -0.8
CD44-201ENST00000263398 FAM3CQ92520 227 aa10.06□□□□□ -0.8
CD44-201ENST00000263398 NEURL3Q96EH8 262 aa10.06□□□□□ -0.8
CD44-201ENST00000263398 MS4A8Q9BY19 250 aa10.06□□□□□ -0.8
CD44-201ENST00000263398 UNKLQ9H9P5 680 aaKnown RBP10.06□□□□□ -0.8
CD44-201ENST00000263398 PTTG3PQ9NZH4 202 aa10.06□□□□□ -0.8
CD44-201ENST00000263398 CPNE7Q9UBL6 633 aa10.06□□□□□ -0.8
CD44-201ENST00000263398 A3GALT2U3KPV4 340 aa10.06□□□□□ -0.8
CD44-201ENST00000263398 H3BML4 177 aa10.06□□□□□ -0.8
CD44-201ENST00000263398 TAPBPO15533 448 aa10.06□□□□□ -0.8
CD44-201ENST00000263398 SDC3O75056 442 aa10.06□□□□□ -0.8
CD44-201ENST00000263398 SLCO2B1O94956 709 aa10.06□□□□□ -0.8
CD44-201ENST00000263398 MMP2P08253 660 aa10.06□□□□□ -0.8
CD44-201ENST00000263398 OR8U9P0C7N5 309 aa10.06□□□□□ -0.8
CD44-201ENST00000263398 AQP2P41181 271 aa10.06□□□□□ -0.8
CD44-201ENST00000263398 TM4SF4P48230 202 aa10.06□□□□□ -0.8
CD44-201ENST00000263398 PDE7AQ13946 482 aa10.06□□□□□ -0.8
CD44-201ENST00000263398 KCNJ8Q15842 424 aa10.06□□□□□ -0.8
CD44-201ENST00000263398 RPE65Q16518 533 aa10.06□□□□□ -0.8
CD44-201ENST00000263398 UNQ6126/PRO20091Q6UXV3 157 aa10.06□□□□□ -0.8
CD44-201ENST00000263398 SLC35F3Q8IY50 421 aa10.06□□□□□ -0.8
CD44-201ENST00000263398 LMNTD1Q8N9Z9 388 aa10.06□□□□□ -0.8
CD44-201ENST00000263398 FAM71F1Q96KD3 344 aaPredicted RBP10.06□□□□□ -0.8
CD44-201ENST00000263398 PRRT1Q99946 306 aa10.06□□□□□ -0.8
CD44-201ENST00000263398 CXorf36Q9H7Y0 433 aa10.06□□□□□ -0.8
CD44-201ENST00000263398 KLF15Q9UIH9 416 aa10.06□□□□□ -0.8
CD44-201ENST00000263398 HCFC2Q9Y5Z7 792 aa10.06□□□□□ -0.8
CD44-201ENST00000263398 MYO7AQ13402 2215 aa10.05□□□□□ -0.8
CD44-201ENST00000263398 SLC9B1P1A6NJY1 282 aa10.05□□□□□ -0.8
CD44-201ENST00000263398 SPDEFO95238 335 aa10.05□□□□□ -0.8
CD44-201ENST00000263398 PVRP15151 417 aa10.05□□□□□ -0.8
CD44-201ENST00000263398 ACPPP15309 386 aa10.05□□□□□ -0.8
CD44-201ENST00000263398 ARSBP15848 533 aa10.05□□□□□ -0.8
CD44-201ENST00000263398 NUDT1P36639 197 aa10.05□□□□□ -0.8
CD44-201ENST00000263398 SLC6A11P48066 632 aa10.05□□□□□ -0.8
CD44-201ENST00000263398 AGAP7PQ5VUJ5 663 aa10.05□□□□□ -0.8
CD44-201ENST00000263398 ZNF100Q8IYN0 542 aa10.05□□□□□ -0.8
CD44-201ENST00000263398 PRR22Q8IZ63 422 aa10.05□□□□□ -0.8
CD44-201ENST00000263398 SPTSSAQ969W0 71 aa10.05□□□□□ -0.8
CD44-201ENST00000263398 CENPOQ9BU64 300 aa10.05□□□□□ -0.8
CD44-201ENST00000263398 RBM24Q9BX46 236 aaKnown RBP10.05□□□□□ -0.8
CD44-201ENST00000263398 MARCH5Q9NX47 278 aa10.05□□□□□ -0.8
CD44-201ENST00000263398 CBLCQ9ULV8 474 aa10.05□□□□□ -0.8
CD44-201ENST00000263398 SRPK3Q9UPE1 567 aa10.05□□□□□ -0.8
CD44-201ENST00000263398 SLC22A7Q9Y694 548 aa10.05□□□□□ -0.8
CD44-201ENST00000263398 A6NLC8 198 aa10.05□□□□□ -0.8
CD44-201ENST00000263398 GJE1A6NN92 205 aa10.05□□□□□ -0.8
CD44-201ENST00000263398 BPNT1O95861 308 aa10.05□□□□□ -0.8
CD44-201ENST00000263398 HOXB9P17482 250 aaPredicted RBP10.05□□□□□ -0.8
CD44-201ENST00000263398 MMP12P39900 470 aa10.05□□□□□ -0.8
CD44-201ENST00000263398 OPRD1P41143 372 aa10.05□□□□□ -0.8
CD44-201ENST00000263398 CAMLGP49069 296 aa10.05□□□□□ -0.8
CD44-201ENST00000263398 RPL34P49207 117 aaKnown RBP10.05□□□□□ -0.8
CD44-201ENST00000263398 MEF2DQ14814 521 aa10.05□□□□□ -0.8
CD44-201ENST00000263398 PPA1Q15181 289 aa10.05□□□□□ -0.8
CD44-201ENST00000263398 DLEU7Q6UYE1 221 aa10.05□□□□□ -0.8
CD44-201ENST00000263398 GAREM2Q75VX8 874 aa10.05□□□□□ -0.8
CD44-201ENST00000263398 SLC7A5P1Q8MH63 180 aa10.05□□□□□ -0.8
CD44-201ENST00000263398 MFSD9Q8NBP5 474 aa10.05□□□□□ -0.8
CD44-201ENST00000263398 ARL11Q969Q4 196 aa10.05□□□□□ -0.8
CD44-201ENST00000263398 RRNAD1Q96FB5 475 aaKnown RBP10.05□□□□□ -0.8
CD44-201ENST00000263398 CRB3Q9BUF7 120 aa10.05□□□□□ -0.8
CD44-201ENST00000263398 NDUFAF4Q9P032 175 aa10.05□□□□□ -0.8
CD44-201ENST00000263398 SLC16A7O60669 478 aa10.05□□□□□ -0.8
CD44-201ENST00000263398 SRPX2O60687 465 aaPredicted RBP10.05□□□□□ -0.8
CD44-201ENST00000263398 IFNA1P01562 189 aa10.05□□□□□ -0.8
CD44-201ENST00000263398 RAB3AP20336 220 aa10.05□□□□□ -0.8
CD44-201ENST00000263398 PIGAP37287 484 aa10.05□□□□□ -0.8
CD44-201ENST00000263398 EMP2P54851 167 aa10.05□□□□□ -0.8
CD44-201ENST00000263398 RPS15P62841 145 aaKnown RBP10.05□□□□□ -0.8
CD44-201ENST00000263398 CXADRP78310 365 aa10.05□□□□□ -0.8
CD44-201ENST00000263398 STEAP3Q658P3 488 aa10.05□□□□□ -0.8
CD44-201ENST00000263398 KDM4DQ6B0I6 523 aa10.05□□□□□ -0.8
CD44-201ENST00000263398 C3P1Q6ZMU1 363 aa10.05□□□□□ -0.8
CD44-201ENST00000263398 Q6ZNX1 250 aa10.05□□□□□ -0.8
CD44-201ENST00000263398 VRK3Q8IV63 474 aa10.05□□□□□ -0.8
CD44-201ENST00000263398 DNAJC5GQ8N7S2 189 aa10.05□□□□□ -0.8
CD44-201ENST00000263398 OR56B4Q8NH76 319 aa10.05□□□□□ -0.8
CD44-201ENST00000263398 RBFOX1Q9NWB1 397 aaKnown RBP10.05□□□□□ -0.8
CD44-201ENST00000263398 DIMT1Q9UNQ2 313 aaKnown RBP10.05□□□□□ -0.8
CD44-201ENST00000263398 LOC105378220A0A1B0GUY1 285 aaPredicted RBP10.04□□□□□ -0.8
CD44-201ENST00000263398 BLACEA4D250 179 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 FTCDNL1E5RQL4 147 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 GAPDHSO14556 408 aaPredicted RBP10.04□□□□□ -0.8
CD44-201ENST00000263398 CRTAPO75718 401 aaPredicted RBP10.04□□□□□ -0.8
CD44-201ENST00000263398 TP53P04637 393 aaPredicted RBP10.04□□□□□ -0.8
CD44-201ENST00000263398 SERPINA5P05154 406 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 PCSK6P29122 969 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 RBMS1P29558 406 aaKnown RBP10.04□□□□□ -0.8
CD44-201ENST00000263398 AKR1C2P52895 323 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 NFATC4Q14934 902 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 USF2Q15853 346 aaPredicted RBP10.04□□□□□ -0.8
CD44-201ENST00000263398 TSSK4Q6SA08 328 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 IL22RA1Q8N6P7 574 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 CCDC71LQ8N9Z2 235 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms