RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 RGPD5Q99666 1765 aa17.92■□□□□ 0.46
UPF1-201ENST00000262803 ITGAMP11215 1152 aa17.92■□□□□ 0.46
UPF1-201ENST00000262803 CRHBPP24387 322 aa17.92■□□□□ 0.46
UPF1-201ENST00000262803 CTBSQ01459 385 aa17.92■□□□□ 0.46
UPF1-201ENST00000262803 MSMO1Q15800 293 aa17.92■□□□□ 0.46
UPF1-201ENST00000262803 MPEG1Q2M385 716 aa17.92■□□□□ 0.46
UPF1-201ENST00000262803 AADACL4Q5VUY2 407 aa17.92■□□□□ 0.46
UPF1-201ENST00000262803 OR1S1Q8NH92 325 aa17.92■□□□□ 0.46
UPF1-201ENST00000262803 OR2S2Q9NQN1 319 aa17.92■□□□□ 0.46
UPF1-201ENST00000262803 HCFC1R1Q9NWW0 138 aa17.92■□□□□ 0.46
UPF1-201ENST00000262803 ZNF443Q9Y2A4 671 aaPredicted RBP17.92■□□□□ 0.46
UPF1-201ENST00000262803 CD300LBA8K4G0 201 aa17.92■□□□□ 0.46
UPF1-201ENST00000262803 OLFM2O95897 454 aa17.92■□□□□ 0.46
UPF1-201ENST00000262803 YOD1Q5VVQ6 348 aaPredicted RBP17.92■□□□□ 0.46
UPF1-201ENST00000262803 ADAMTSL4Q6UY14 1074 aa17.92■□□□□ 0.46
UPF1-201ENST00000262803 TAS1R1Q7RTX1 841 aa17.92■□□□□ 0.46
UPF1-201ENST00000262803 NLGN4XQ8N0W4 816 aa17.92■□□□□ 0.46
UPF1-201ENST00000262803 ZFP90Q8TF47 636 aa17.92■□□□□ 0.46
UPF1-201ENST00000262803 TSNAXQ99598 290 aaKnown RBP17.92■□□□□ 0.46
UPF1-201ENST00000262803 SLC46A2Q9BY10 475 aa17.92■□□□□ 0.46
UPF1-201ENST00000262803 EPHX3Q9H6B9 360 aa17.92■□□□□ 0.46
UPF1-201ENST00000262803 PPP1R14DQ9NXH3 145 aa17.92■□□□□ 0.46
UPF1-201ENST00000262803 FBXO7Q9Y3I1 522 aa17.92■□□□□ 0.46
UPF1-201ENST00000262803 IER3IP1Q9Y5U9 82 aa17.92■□□□□ 0.46
UPF1-201ENST00000262803 MYO10Q9HD67 2058 aa17.92■□□□□ 0.46
UPF1-201ENST00000262803 CDHR4A6H8M9 788 aa17.91■□□□□ 0.46
UPF1-201ENST00000262803 TSFMP43897 325 aaKnown RBP17.91■□□□□ 0.46
UPF1-201ENST00000262803 EEF1A1P68104 462 aaKnown RBP17.91■□□□□ 0.46
UPF1-201ENST00000262803 ASB11Q8WXH4 323 aa17.91■□□□□ 0.46
UPF1-201ENST00000262803 UTP23Q9BRU9 249 aaKnown RBP17.91■□□□□ 0.46
UPF1-201ENST00000262803 LHX6Q9UPM6 363 aa17.91■□□□□ 0.46
UPF1-201ENST00000262803 TCRBV5S1A1TA0A578 114 aa17.91■□□□□ 0.46
UPF1-201ENST00000262803 CDK1P06493 297 aa17.91■□□□□ 0.46
UPF1-201ENST00000262803 RAB5BP61020 215 aa17.91■□□□□ 0.46
UPF1-201ENST00000262803 CXCR4P61073 352 aa17.91■□□□□ 0.46
UPF1-201ENST00000262803 SLC39A13Q96H72 371 aa17.91■□□□□ 0.46
UPF1-201ENST00000262803 PPIL3Q9H2H8 161 aaKnown RBP17.91■□□□□ 0.46
UPF1-201ENST00000262803 ATXN7L1Q9ULK2 861 aaPredicted RBP17.91■□□□□ 0.46
UPF1-201ENST00000262803 MOKQ9UQ07 419 aa17.91■□□□□ 0.46
UPF1-201ENST00000262803 UBR2Q8IWV8 1755 aa17.91■□□□□ 0.46
UPF1-201ENST00000262803 SELPLGQ14242 412 aa17.91■□□□□ 0.46
UPF1-201ENST00000262803 RPE65Q16518 533 aa17.91■□□□□ 0.46
UPF1-201ENST00000262803 KIF18BQ86Y91 864 aa17.91■□□□□ 0.46
UPF1-201ENST00000262803 TMEM178AQ8NBL3 297 aa17.91■□□□□ 0.46
UPF1-201ENST00000262803 EDAQ92838 391 aa17.91■□□□□ 0.46
UPF1-201ENST00000262803 BPIFA2Q96DR5 249 aa17.91■□□□□ 0.46
UPF1-201ENST00000262803 DRD5P21918 477 aa17.91■□□□□ 0.46
UPF1-201ENST00000262803 PRDX1Q06830 199 aaKnown RBP17.91■□□□□ 0.46
UPF1-201ENST00000262803 SLC6A20Q9NP91 592 aa17.91■□□□□ 0.46
UPF1-201ENST00000262803 CRYBG1Q9Y4K1 1723 aa17.91■□□□□ 0.46
UPF1-201ENST00000262803 P2RX6O15547 441 aa17.91■□□□□ 0.46
UPF1-201ENST00000262803 GPRIN2O60269 458 aa17.91■□□□□ 0.46
UPF1-201ENST00000262803 SNU13P55769 128 aaKnown RBP17.91■□□□□ 0.46
UPF1-201ENST00000262803 SLC35A1P78382 337 aa17.91■□□□□ 0.46
UPF1-201ENST00000262803 RELAQ04206 551 aa17.91■□□□□ 0.46
UPF1-201ENST00000262803 HES5Q5TA89 166 aa17.91■□□□□ 0.46
UPF1-201ENST00000262803 CNIH2Q6PI25 160 aa17.91■□□□□ 0.46
UPF1-201ENST00000262803 ALKAL1Q6UXT8 129 aa17.91■□□□□ 0.46
UPF1-201ENST00000262803 ZNF761Q86XN6 746 aaPredicted RBP17.91■□□□□ 0.46
UPF1-201ENST00000262803 C19orf47Q8N9M1 422 aaKnown RBP17.91■□□□□ 0.46
UPF1-201ENST00000262803 SENP5Q96HI0 755 aaPredicted RBP17.91■□□□□ 0.46
UPF1-201ENST00000262803 SLC25A31Q9H0C2 315 aa17.91■□□□□ 0.46
UPF1-201ENST00000262803 HS3ST2Q9Y278 367 aa17.91■□□□□ 0.46
UPF1-201ENST00000262803 hCG_1809904A0A1W2PP81 198 aa17.9■□□□□ 0.46
UPF1-201ENST00000262803 A0A1W2PPE2 198 aa17.9■□□□□ 0.46
UPF1-201ENST00000262803 A0A1W2PR64 198 aa17.9■□□□□ 0.46
UPF1-201ENST00000262803 A0A1W2PRV1 198 aa17.9■□□□□ 0.46
UPF1-201ENST00000262803 KRBA1A5PL33 1030 aa17.9■□□□□ 0.46
UPF1-201ENST00000262803 MPIG6BO95866 241 aa17.9■□□□□ 0.46
UPF1-201ENST00000262803 MAOAP21397 527 aa17.9■□□□□ 0.46
UPF1-201ENST00000262803 FKBP2P26885 142 aaKnown RBP17.9■□□□□ 0.46
UPF1-201ENST00000262803 ZNF92Q03936 586 aa17.9■□□□□ 0.46
UPF1-201ENST00000262803 ZNF691Q5VV52 312 aa17.9■□□□□ 0.46
UPF1-201ENST00000262803 FAM198BQ6UWH4 519 aa17.9■□□□□ 0.46
UPF1-201ENST00000262803 UBTD2Q8WUN7 234 aa17.9■□□□□ 0.46
UPF1-201ENST00000262803 ZNF480Q8WV37 535 aa17.9■□□□□ 0.46
UPF1-201ENST00000262803 THSD1Q9NS62 852 aa17.9■□□□□ 0.46
UPF1-201ENST00000262803 GLTPQ9NZD2 209 aa17.9■□□□□ 0.46
UPF1-201ENST00000262803 HS3ST3A1Q9Y663 406 aa17.9■□□□□ 0.46
UPF1-201ENST00000262803 C7orf72A4D263 438 aa17.9■□□□□ 0.46
UPF1-201ENST00000262803 TRAPPC2LH3BP13 241 aa17.9■□□□□ 0.46
UPF1-201ENST00000262803 RRP8O43159 456 aaKnown RBP17.9■□□□□ 0.46
UPF1-201ENST00000262803 FCRLBQ6BAA4 426 aa17.9■□□□□ 0.46
UPF1-201ENST00000262803 TPRA1Q86W33 373 aa17.9■□□□□ 0.46
UPF1-201ENST00000262803 MRPL33O75394 65 aaKnown RBP17.9■□□□□ 0.46
UPF1-201ENST00000262803 GJA4P35212 333 aa17.9■□□□□ 0.46
UPF1-201ENST00000262803 SSR4P51571 173 aa17.9■□□□□ 0.46
UPF1-201ENST00000262803 C6orf132Q5T0Z8 1188 aa17.9■□□□□ 0.46
UPF1-201ENST00000262803 GPR157Q5UAW9 335 aa17.9■□□□□ 0.46
UPF1-201ENST00000262803 ZNF454Q8N9F8 522 aa17.9■□□□□ 0.46
UPF1-201ENST00000262803 FAM71F1Q96KD3 344 aaPredicted RBP17.9■□□□□ 0.46
UPF1-201ENST00000262803 ANKRD33BA6NCL7 494 aa17.9■□□□□ 0.46
UPF1-201ENST00000262803 DUSP7Q16829 419 aa17.9■□□□□ 0.46
UPF1-201ENST00000262803 RNF175Q8N4F7 328 aa17.9■□□□□ 0.46
UPF1-201ENST00000262803 RAB3DO95716 219 aa17.89■□□□□ 0.45
UPF1-201ENST00000262803 EIF1P41567 113 aaKnown RBP17.89■□□□□ 0.45
UPF1-201ENST00000262803 SNRPD2P62316 118 aaKnown RBP17.89■□□□□ 0.45
UPF1-201ENST00000262803 DESI1Q6ICB0 168 aa17.89■□□□□ 0.45
UPF1-201ENST00000262803 FRMPD2BQ6IN97 320 aa17.89■□□□□ 0.45
UPF1-201ENST00000262803 KIAA1211LQ6NV74 962 aa17.89■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms