RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 ICAM5Q9UMF0 924 aa17.16■□□□□ 0.34
CLN3-262ENST00000637699 RGS14O43566 566 aa17.15■□□□□ 0.34
CLN3-262ENST00000637699 HSPA4LO95757 839 aa17.15■□□□□ 0.34
CLN3-262ENST00000637699 HMGN2P05204 90 aaKnown RBP17.15■□□□□ 0.34
CLN3-262ENST00000637699 PRKCAP17252 672 aa17.15■□□□□ 0.34
CLN3-262ENST00000637699 RASGEF1BQ0VAM2 473 aa17.15■□□□□ 0.34
CLN3-262ENST00000637699 LASP1Q14847 261 aaKnown RBP17.15■□□□□ 0.34
CLN3-262ENST00000637699 KLHL26Q53HC5 615 aa17.15■□□□□ 0.34
CLN3-262ENST00000637699 EXOSC6Q5RKV6 272 aaKnown RBP17.15■□□□□ 0.34
CLN3-262ENST00000637699 CLEC2AQ6UVW9 174 aa17.15■□□□□ 0.34
CLN3-262ENST00000637699 PIAS4Q8N2W9 510 aaPredicted RBP17.15■□□□□ 0.34
CLN3-262ENST00000637699 ZNF527Q8NB42 609 aa17.15■□□□□ 0.34
CLN3-262ENST00000637699 OR10H5Q8NGA6 315 aa17.15■□□□□ 0.34
CLN3-262ENST00000637699 OR2T11Q8NH01 316 aa17.15■□□□□ 0.34
CLN3-262ENST00000637699 RFWD2Q8NHY2 731 aa17.15■□□□□ 0.34
CLN3-262ENST00000637699 GPR119Q8TDV5 335 aa17.15■□□□□ 0.34
CLN3-262ENST00000637699 ZNF524Q96C55 264 aa17.15■□□□□ 0.34
CLN3-262ENST00000637699 FAM120BQ96EK7 910 aaKnown RBP17.15■□□□□ 0.34
CLN3-262ENST00000637699 TNFRSF13CQ96RJ3 184 aa17.15■□□□□ 0.34
CLN3-262ENST00000637699 FIS1Q9Y3D6 152 aa17.15■□□□□ 0.34
CLN3-262ENST00000637699 ACTL7BQ9Y614 415 aa17.15■□□□□ 0.34
CLN3-262ENST00000637699 A0A096LNT2 108 aa17.14■□□□□ 0.33
CLN3-262ENST00000637699 H3BNH8 94 aa17.14■□□□□ 0.33
CLN3-262ENST00000637699 F12P00748 615 aaPredicted RBP17.14■□□□□ 0.33
CLN3-262ENST00000637699 GGT1P19440 569 aa17.14■□□□□ 0.33
CLN3-262ENST00000637699 IGHV1-2P23083 117 aa17.14■□□□□ 0.33
CLN3-262ENST00000637699 RAC3P60763 192 aa17.14■□□□□ 0.33
CLN3-262ENST00000637699 NAA20P61599 178 aa17.14■□□□□ 0.33
CLN3-262ENST00000637699 PDE7AQ13946 482 aa17.14■□□□□ 0.33
CLN3-262ENST00000637699 RFTN2Q52LD8 501 aaPredicted RBP17.14■□□□□ 0.33
CLN3-262ENST00000637699 TIMM23BQ5SRD1 257 aa17.14■□□□□ 0.33
CLN3-262ENST00000637699 DDX59Q5T1V6 619 aaKnown RBP eCLIP17.14■□□□□ 0.33
CLN3-262ENST00000637699 CDC73Q6P1J9 531 aa17.14■□□□□ 0.33
CLN3-262ENST00000637699 Q6ZSR9 355 aa17.14■□□□□ 0.33
CLN3-262ENST00000637699 GSPT2Q8IYD1 628 aaKnown RBP17.14■□□□□ 0.33
CLN3-262ENST00000637699 ZNF614Q8N883 585 aa17.14■□□□□ 0.33
CLN3-262ENST00000637699 MRGPRX4Q96LA9 322 aa17.14■□□□□ 0.33
CLN3-262ENST00000637699 ZNF300Q96RE9 604 aaPredicted RBP17.14■□□□□ 0.33
CLN3-262ENST00000637699 STACQ99469 402 aa17.14■□□□□ 0.33
CLN3-262ENST00000637699 BEX2Q9BXY8 128 aa17.14■□□□□ 0.33
CLN3-262ENST00000637699 HOXD1Q9GZZ0 328 aa17.14■□□□□ 0.33
CLN3-262ENST00000637699 PIGUQ9H490 435 aa17.14■□□□□ 0.33
CLN3-262ENST00000637699 ANKZF1Q9H8Y5 726 aa17.14■□□□□ 0.33
CLN3-262ENST00000637699 DUSP22Q9NRW4 184 aa17.14■□□□□ 0.33
CLN3-262ENST00000637699 SIRT3Q9NTG7 399 aaPredicted RBP17.14■□□□□ 0.33
CLN3-262ENST00000637699 PLCE1Q9P212 2302 aa17.13■□□□□ 0.33
CLN3-262ENST00000637699 A0A1W2PPM1 405 aa17.13■□□□□ 0.33
CLN3-262ENST00000637699 E7EQL1 145 aa17.13■□□□□ 0.33
CLN3-262ENST00000637699 SMAD9O15198 467 aaKnown RBP17.13■□□□□ 0.33
CLN3-262ENST00000637699 PROCP04070 461 aa17.13■□□□□ 0.33
CLN3-262ENST00000637699 SUMO3P55854 103 aaPredicted RBP17.13■□□□□ 0.33
CLN3-262ENST00000637699 RPL38P63173 70 aaKnown RBP17.13■□□□□ 0.33
CLN3-262ENST00000637699 SELENBP1Q13228 472 aa17.13■□□□□ 0.33
CLN3-262ENST00000637699 ZNF100Q8IYN0 542 aa17.13■□□□□ 0.33
CLN3-262ENST00000637699 TMCO5AQ8N6Q1 288 aa17.13■□□□□ 0.33
CLN3-262ENST00000637699 FCRL1Q96LA6 429 aa17.13■□□□□ 0.33
CLN3-262ENST00000637699 OR5B2Q96R09 309 aa17.13■□□□□ 0.33
CLN3-262ENST00000637699 POU2F3Q9UKI9 436 aa17.13■□□□□ 0.33
CLN3-262ENST00000637699 OR5H1A6NKK0 313 aa17.12■□□□□ 0.33
CLN3-262ENST00000637699 CYTIPO60759 359 aa17.12■□□□□ 0.33
CLN3-262ENST00000637699 GLRA3O75311 464 aa17.12■□□□□ 0.33
CLN3-262ENST00000637699 LINC00032P0C843 101 aa17.12■□□□□ 0.33
CLN3-262ENST00000637699 COX5AP20674 150 aa17.12■□□□□ 0.33
CLN3-262ENST00000637699 TTKP33981 857 aa17.12■□□□□ 0.33
CLN3-262ENST00000637699 CCR4P51679 360 aa17.12■□□□□ 0.33
CLN3-262ENST00000637699 DSCR9P59020 149 aa17.12■□□□□ 0.33
CLN3-262ENST00000637699 DNAJB13P59910 316 aa17.12■□□□□ 0.33
CLN3-262ENST00000637699 LOXL1Q08397 574 aaPredicted RBP17.12■□□□□ 0.33
CLN3-262ENST00000637699 RAB35Q15286 201 aa17.12■□□□□ 0.33
CLN3-262ENST00000637699 KRTAP24-1Q3LI83 254 aa17.12■□□□□ 0.33
CLN3-262ENST00000637699 DCST2Q5T1A1 773 aa17.12■□□□□ 0.33
CLN3-262ENST00000637699 C11orf71Q6IPW1 123 aa17.12■□□□□ 0.33
CLN3-262ENST00000637699 SLC22A25Q6T423 547 aa17.12■□□□□ 0.33
CLN3-262ENST00000637699 P2RY8Q86VZ1 359 aa17.12■□□□□ 0.33
CLN3-262ENST00000637699 ZNF525Q8N782 197 aa17.12■□□□□ 0.33
CLN3-262ENST00000637699 MZB1Q8WU39 189 aa17.12■□□□□ 0.33
CLN3-262ENST00000637699 ZNF75CPQ92670 426 aaPredicted RBP17.12■□□□□ 0.33
CLN3-262ENST00000637699 RADILQ96JH8 1075 aa17.12■□□□□ 0.33
CLN3-262ENST00000637699 MANSC1Q9H8J5 431 aa17.12■□□□□ 0.33
CLN3-262ENST00000637699 CBLN4Q9NTU7 201 aa17.12■□□□□ 0.33
CLN3-262ENST00000637699 PSMC3IPQ9P2W1 217 aaPredicted RBP17.12■□□□□ 0.33
CLN3-262ENST00000637699 KCNE3Q9Y6H6 103 aa17.12■□□□□ 0.33
CLN3-262ENST00000637699 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP17.12■□□□□ 0.337e-9■■□□□ 13.5
CLN3-262ENST00000637699 AZIN1O14977 448 aa17.11■□□□□ 0.33
CLN3-262ENST00000637699 PGM3O95394 542 aa17.11■□□□□ 0.33
CLN3-262ENST00000637699 H6PDO95479 791 aa17.11■□□□□ 0.33
CLN3-262ENST00000637699 IGHV3-9P01782 118 aa17.11■□□□□ 0.33
CLN3-262ENST00000637699 C8BP07358 591 aa17.11■□□□□ 0.33
CLN3-262ENST00000637699 ZNF83P51522 516 aa17.11■□□□□ 0.33
CLN3-262ENST00000637699 ATP12AP54707 1039 aa17.11■□□□□ 0.33
CLN3-262ENST00000637699 CASP9P55211 416 aa17.11■□□□□ 0.33
CLN3-262ENST00000637699 VLDLRP98155 873 aa17.11■□□□□ 0.33
CLN3-262ENST00000637699 CHRNEQ04844 493 aa17.11■□□□□ 0.33
CLN3-262ENST00000637699 SPOCK1Q08629 439 aa17.11■□□□□ 0.33
CLN3-262ENST00000637699 TP53BP2Q13625 1128 aa17.11■□□□□ 0.33
CLN3-262ENST00000637699 QPRTQ15274 297 aa17.11■□□□□ 0.33
CLN3-262ENST00000637699 GALNTL6Q49A17 601 aa17.11■□□□□ 0.33
CLN3-262ENST00000637699 ARL13AQ5H913 290 aaPredicted RBP17.11■□□□□ 0.33
CLN3-262ENST00000637699 SLC25A53Q5H9E4 307 aa17.11■□□□□ 0.33
CLN3-262ENST00000637699 TMEM108Q6UXF1 575 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms