RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 SERPINA11Q86U17 422 aa16.5■□□□□ 0.23
CLN3-259ENST00000637551 RETREG3Q86VR2 466 aa16.5■□□□□ 0.23
CLN3-259ENST00000637551 ZNF614Q8N883 585 aa16.5■□□□□ 0.23
CLN3-259ENST00000637551 GATSQ8NAP1 163 aa16.5■□□□□ 0.23
CLN3-259ENST00000637551 LILRB4Q8NHJ6 448 aa16.5■□□□□ 0.23
CLN3-259ENST00000637551 RP9Q8TA86 221 aaKnown RBP16.5■□□□□ 0.23
CLN3-259ENST00000637551 SLC25A43Q8WUT9 341 aaPredicted RBP16.5■□□□□ 0.23
CLN3-259ENST00000637551 SPATA5L1Q9BVQ7 753 aa16.5■□□□□ 0.23
CLN3-259ENST00000637551 RUBCNLQ9H714 662 aa16.5■□□□□ 0.23
CLN3-259ENST00000637551 SLAMF8Q9P0V8 285 aa16.5■□□□□ 0.23
CLN3-259ENST00000637551 NIPSNAP3AQ9UFN0 247 aaPredicted RBP16.5■□□□□ 0.23
CLN3-259ENST00000637551 ZNF232Q9UNY5 417 aa16.5■□□□□ 0.23
CLN3-259ENST00000637551 CARD8Q9Y2G2 431 aa16.5■□□□□ 0.23
CLN3-259ENST00000637551 ANKHD1Q8IWZ3 2542 aaKnown RBP16.49■□□□□ 0.23
CLN3-259ENST00000637551 NPIPA5A0A0B4J1W7 369 aa16.49■□□□□ 0.23
CLN3-259ENST00000637551 A1L4Q6 167 aa16.49■□□□□ 0.23
CLN3-259ENST00000637551 NPIPA7E9PJI5 369 aa16.49■□□□□ 0.23
CLN3-259ENST00000637551 ADAMDEC1O15204 470 aa16.49■□□□□ 0.23
CLN3-259ENST00000637551 SNX3O60493 162 aa16.49■□□□□ 0.23
CLN3-259ENST00000637551 IL2RAP01589 272 aa16.49■□□□□ 0.23
CLN3-259ENST00000637551 BCHEP06276 602 aa16.49■□□□□ 0.23
CLN3-259ENST00000637551 NPIPA8P0DM63 369 aa16.49■□□□□ 0.23
CLN3-259ENST00000637551 IL7RP16871 459 aa16.49■□□□□ 0.23
CLN3-259ENST00000637551 PRKCAP17252 672 aa16.49■□□□□ 0.23
CLN3-259ENST00000637551 PEX19P40855 299 aa16.49■□□□□ 0.23
CLN3-259ENST00000637551 HTR3AP46098 478 aa16.49■□□□□ 0.23
CLN3-259ENST00000637551 CASP9P55211 416 aa16.49■□□□□ 0.23
CLN3-259ENST00000637551 NUP107P57740 925 aa16.49■□□□□ 0.23
CLN3-259ENST00000637551 PMPCAQ10713 525 aa16.49■□□□□ 0.23
CLN3-259ENST00000637551 SELENBP1Q13228 472 aa16.49■□□□□ 0.23
CLN3-259ENST00000637551 NFYCQ13952 458 aa16.49■□□□□ 0.23
CLN3-259ENST00000637551 MAPK14Q16539 360 aa16.49■□□□□ 0.23
CLN3-259ENST00000637551 PDSS1Q5T2R2 415 aa16.49■□□□□ 0.23
CLN3-259ENST00000637551 OR2A2Q6IF42 318 aa16.49■□□□□ 0.23
CLN3-259ENST00000637551 REEP3Q6NUK4 255 aa16.49■□□□□ 0.23
CLN3-259ENST00000637551 KRT73Q86Y46 540 aa16.49■□□□□ 0.23
CLN3-259ENST00000637551 CA5BP1Q8WTZ4 195 aa16.49■□□□□ 0.23
CLN3-259ENST00000637551 TMEM19Q96HH6 336 aa16.49■□□□□ 0.23
CLN3-259ENST00000637551 SH3YL1Q96HL8 342 aaPredicted RBP16.49■□□□□ 0.23
CLN3-259ENST00000637551 GID8Q9NWU2 228 aa16.49■□□□□ 0.23
CLN3-259ENST00000637551 VDAC3Q9Y277 283 aa16.49■□□□□ 0.23
CLN3-259ENST00000637551 RPH3AQ9Y2J0 694 aaPredicted RBP16.49■□□□□ 0.23
CLN3-259ENST00000637551 ZNF337Q9Y3M9 751 aa16.49■□□□□ 0.23
CLN3-259ENST00000637551 MED12LQ86YW9 2145 aa16.48■□□□□ 0.23
CLN3-259ENST00000637551 CDHR4A6H8M9 788 aa16.48■□□□□ 0.23
CLN3-259ENST00000637551 PRORSD1PA6NEY8 169 aa16.48■□□□□ 0.23
CLN3-259ENST00000637551 C17orf51A8MQB3 221 aa16.48■□□□□ 0.23
CLN3-259ENST00000637551 C5orf58C9J3I9 102 aa16.48■□□□□ 0.23
CLN3-259ENST00000637551 NUDT14O95848 222 aa16.48■□□□□ 0.23
CLN3-259ENST00000637551 PCYT1AP49585 367 aa16.48■□□□□ 0.23
CLN3-259ENST00000637551 C3orf33Q6P1S2 294 aa16.48■□□□□ 0.23
CLN3-259ENST00000637551 CHMP1BQ7LBR1 199 aa16.48■□□□□ 0.23
CLN3-259ENST00000637551 ARPINQ7Z6K5 226 aa16.48■□□□□ 0.23
CLN3-259ENST00000637551 CPLX4Q7Z7G2 160 aa16.48■□□□□ 0.23
CLN3-259ENST00000637551 C11orf65Q8NCR3 313 aa16.48■□□□□ 0.23
CLN3-259ENST00000637551 SDCCAG3Q96C92 435 aa16.48■□□□□ 0.23
CLN3-259ENST00000637551 TUBA1CQ9BQE3 449 aa16.48■□□□□ 0.23
CLN3-259ENST00000637551 KAT8Q9H7Z6 458 aaKnown RBP16.48■□□□□ 0.23
CLN3-259ENST00000637551 SLC24A3Q9HC58 644 aa16.48■□□□□ 0.23
CLN3-259ENST00000637551 ACER3Q9NUN7 267 aa16.48■□□□□ 0.23
CLN3-259ENST00000637551 DNAJB12Q9NXW2 375 aaKnown RBP16.48■□□□□ 0.23
CLN3-259ENST00000637551 TNFRSF10DQ9UBN6 386 aa16.48■□□□□ 0.23
CLN3-259ENST00000637551 RNF6Q9Y252 685 aa16.48■□□□□ 0.23
CLN3-259ENST00000637551 SPIN1Q9Y657 262 aaPredicted RBP16.48■□□□□ 0.23
CLN3-259ENST00000637551 CENPVL1A0A0U1RR11 272 aa16.47■□□□□ 0.23
CLN3-259ENST00000637551 FBP2O00757 339 aa16.47■□□□□ 0.23
CLN3-259ENST00000637551 RCBTB2O95199 551 aa16.47■□□□□ 0.23
CLN3-259ENST00000637551 PGM3O95394 542 aa16.47■□□□□ 0.23
CLN3-259ENST00000637551 C1QCP02747 245 aa16.47■□□□□ 0.23
CLN3-259ENST00000637551 UBTFL6P0CB48 400 aaPredicted RBP16.47■□□□□ 0.23
CLN3-259ENST00000637551 DRD4P21917 467 aa16.47■□□□□ 0.23
CLN3-259ENST00000637551 SLC6A2P23975 617 aa16.47■□□□□ 0.23
CLN3-259ENST00000637551 COL8A1P27658 744 aa16.47■□□□□ 0.23
CLN3-259ENST00000637551 PRKAR1BP31321 381 aa16.47■□□□□ 0.23
CLN3-259ENST00000637551 APOBEC1P41238 236 aaKnown RBP16.47■□□□□ 0.23
CLN3-259ENST00000637551 CLK1P49759 484 aaKnown RBP16.47■□□□□ 0.23
CLN3-259ENST00000637551 CDK6Q00534 326 aa16.47■□□□□ 0.23
CLN3-259ENST00000637551 MMEL1Q495T6 779 aa16.47■□□□□ 0.23
CLN3-259ENST00000637551 C3P1Q6ZMU1 363 aa16.47■□□□□ 0.23
CLN3-259ENST00000637551 GGNQ86UU5 652 aa16.47■□□□□ 0.23
CLN3-259ENST00000637551 TMCO5AQ8N6Q1 288 aa16.47■□□□□ 0.23
CLN3-259ENST00000637551 ACBD4Q8NC06 268 aa16.47■□□□□ 0.23
CLN3-259ENST00000637551 HIPK4Q8NE63 616 aa16.47■□□□□ 0.23
CLN3-259ENST00000637551 OR52P1PQ8NH57 321 aa16.47■□□□□ 0.23
CLN3-259ENST00000637551 ZG16BQ96DA0 208 aa16.47■□□□□ 0.23
CLN3-259ENST00000637551 ADGRG7Q96K78 797 aa16.47■□□□□ 0.23
CLN3-259ENST00000637551 RNF145Q96MT1 663 aa16.47■□□□□ 0.23
CLN3-259ENST00000637551 ZNF607Q96SK3 696 aa16.47■□□□□ 0.23
CLN3-259ENST00000637551 SFXN3Q9BWM7 321 aa16.47■□□□□ 0.23
CLN3-259ENST00000637551 FOXD3Q9UJU5 478 aaPredicted RBP16.47■□□□□ 0.23
CLN3-259ENST00000637551 ANGPT4Q9Y264 503 aa16.47■□□□□ 0.23
CLN3-259ENST00000637551 CLCA1A8K7I4 914 aa16.46■□□□□ 0.23
CLN3-259ENST00000637551 H3BML4 177 aa16.46■□□□□ 0.23
CLN3-259ENST00000637551 NDUFAB1O14561 156 aa16.46■□□□□ 0.23
CLN3-259ENST00000637551 DVL2O14641 736 aa16.46■□□□□ 0.23
CLN3-259ENST00000637551 MRASO14807 208 aa16.46■□□□□ 0.23
CLN3-259ENST00000637551 ZNHIT1O43257 154 aa16.46■□□□□ 0.23
CLN3-259ENST00000637551 SERPINB7O75635 380 aa16.46■□□□□ 0.23
CLN3-259ENST00000637551 CLDN1O95832 211 aa16.46■□□□□ 0.23
CLN3-259ENST00000637551 PRDX6P30041 224 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms