RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 MYBPC1Q00872 1141 aa18.37■□□□□ 0.53
CLN3-250ENST00000636839 EFR3AQ14156 821 aa18.37■□□□□ 0.53
CLN3-250ENST00000636839 ALG10BQ5I7T1 473 aa18.37■□□□□ 0.53
CLN3-250ENST00000636839 TMEM236Q5W0B7 351 aa18.37■□□□□ 0.53
CLN3-250ENST00000636839 ZNF613Q6PF04 617 aa18.37■□□□□ 0.53
CLN3-250ENST00000636839 CCDC71Q8IV32 467 aaPredicted RBP18.37■□□□□ 0.53
CLN3-250ENST00000636839 ZNF555Q8NEP9 628 aa18.37■□□□□ 0.53
CLN3-250ENST00000636839 TRIM2Q9C040 744 aa18.37■□□□□ 0.53
CLN3-250ENST00000636839 POFUT2Q9Y2G5 429 aa18.37■□□□□ 0.53
CLN3-250ENST00000636839 NAGAP17050 411 aa18.36■□□□□ 0.53
CLN3-250ENST00000636839 FUT1P19526 365 aa18.36■□□□□ 0.53
CLN3-250ENST00000636839 GPR4P46093 362 aa18.36■□□□□ 0.53
CLN3-250ENST00000636839 OMPP47874 163 aa18.36■□□□□ 0.53
CLN3-250ENST00000636839 MLF1P58340 268 aa18.36■□□□□ 0.53
CLN3-250ENST00000636839 RPP38P78345 283 aaKnown RBP18.36■□□□□ 0.53
CLN3-250ENST00000636839 RAPSNQ13702 412 aa18.36■□□□□ 0.53
CLN3-250ENST00000636839 NTRK2Q16620 822 aa18.36■□□□□ 0.53
CLN3-250ENST00000636839 RFX4Q33E94 735 aa18.36■□□□□ 0.53
CLN3-250ENST00000636839 C1orf94Q6P1W5 598 aa18.36■□□□□ 0.53
CLN3-250ENST00000636839 NUP54Q7Z3B4 507 aa18.36■□□□□ 0.53
CLN3-250ENST00000636839 PSMF1Q92530 271 aa18.36■□□□□ 0.53
CLN3-250ENST00000636839 NR4A3Q92570 626 aa18.36■□□□□ 0.53
CLN3-250ENST00000636839 GATA6Q92908 595 aa18.36■□□□□ 0.53
CLN3-250ENST00000636839 TMCO6Q96DC7 493 aa18.36■□□□□ 0.53
CLN3-250ENST00000636839 LAT2Q9GZY6 243 aa18.36■□□□□ 0.53
CLN3-250ENST00000636839 ATP13A2Q9NQ11 1180 aa18.36■□□□□ 0.53
CLN3-250ENST00000636839 MGAT4BQ9UQ53 548 aa18.36■□□□□ 0.53
CLN3-250ENST00000636839 CFAP47Q6ZTR5 3102 aa18.35■□□□□ 0.53
CLN3-250ENST00000636839 SLC16A6O15403 523 aa18.35■□□□□ 0.53
CLN3-250ENST00000636839 TP53P04637 393 aaPredicted RBP18.35■□□□□ 0.53
CLN3-250ENST00000636839 WT1P19544 449 aaPredicted RBP18.35■□□□□ 0.53
CLN3-250ENST00000636839 CD82P27701 267 aa18.35■□□□□ 0.53
CLN3-250ENST00000636839 ITPKBP27987 946 aa18.35■□□□□ 0.53
CLN3-250ENST00000636839 POU1F1P28069 291 aa18.35■□□□□ 0.53
CLN3-250ENST00000636839 PTGDSP41222 190 aa18.35■□□□□ 0.53
CLN3-250ENST00000636839 GAS1P54826 345 aa18.35■□□□□ 0.53
CLN3-250ENST00000636839 ZSWIM7Q19AV6 140 aa18.35■□□□□ 0.53
CLN3-250ENST00000636839 MBOAT2Q6ZWT7 520 aa18.35■□□□□ 0.53
CLN3-250ENST00000636839 TMEM239Q8WW34 195 aa18.35■□□□□ 0.53
CLN3-250ENST00000636839 SLC35B4Q969S0 331 aa18.35■□□□□ 0.53
CLN3-250ENST00000636839 THOC3Q96J01 351 aaKnown RBP18.35■□□□□ 0.53
CLN3-250ENST00000636839 GABARAPL3Q9BY60 117 aa18.35■□□□□ 0.53
CLN3-250ENST00000636839 UCK2Q9BZX2 261 aa18.35■□□□□ 0.53
CLN3-250ENST00000636839 DSN1Q9H410 356 aa18.35■□□□□ 0.53
CLN3-250ENST00000636839 ANKRD19PQ9H560 264 aa18.35■□□□□ 0.53
CLN3-250ENST00000636839 YARS2Q9Y2Z4 477 aaKnown RBP18.35■□□□□ 0.53
CLN3-250ENST00000636839 LOC400499M0QZD8 3231 aa18.35■□□□□ 0.53
CLN3-250ENST00000636839 TRABD2BA6NFA1 517 aa18.35■□□□□ 0.53
CLN3-250ENST00000636839 BCKDKO14874 412 aa18.35■□□□□ 0.53
CLN3-250ENST00000636839 ADAP00813 363 aa18.35■□□□□ 0.53
CLN3-250ENST00000636839 SERPINA7P05543 415 aa18.35■□□□□ 0.53
CLN3-250ENST00000636839 PSPHP78330 225 aa18.35■□□□□ 0.53
CLN3-250ENST00000636839 TTC23Q5W5X9 447 aa18.35■□□□□ 0.53
CLN3-250ENST00000636839 RRM2BQ7LG56 351 aa18.35■□□□□ 0.53
CLN3-250ENST00000636839 NACC2Q96BF6 587 aa18.35■□□□□ 0.53
CLN3-250ENST00000636839 C3orf49Q96BT1 292 aa18.35■□□□□ 0.53
CLN3-250ENST00000636839 DGCR6LQ9BY27 220 aa18.35■□□□□ 0.53
CLN3-250ENST00000636839 POLR2J3Q9H1A7 115 aaKnown RBP18.35■□□□□ 0.53
CLN3-250ENST00000636839 MEPEQ9NQ76 525 aaPredicted RBP18.35■□□□□ 0.53
CLN3-250ENST00000636839 EXOSC3Q9NQT5 275 aaKnown RBP18.35■□□□□ 0.53
CLN3-250ENST00000636839 KLRF1Q9NZS2 232 aa18.35■□□□□ 0.53
CLN3-250ENST00000636839 KLK13Q9UKR3 277 aa18.35■□□□□ 0.53
CLN3-250ENST00000636839 CHCHD2Q9Y6H1 151 aaPredicted RBP18.35■□□□□ 0.53
CLN3-250ENST00000636839 E9PQ18 207 aa18.34■□□□□ 0.53
CLN3-250ENST00000636839 CDC42EP2O14613 210 aa18.34■□□□□ 0.53
CLN3-250ENST00000636839 CHP2O43745 196 aa18.34■□□□□ 0.53
CLN3-250ENST00000636839 F10P00742 488 aa18.34■□□□□ 0.53
CLN3-250ENST00000636839 ICAM2P13598 275 aa18.34■□□□□ 0.53
CLN3-250ENST00000636839 CHMP24386 653 aa18.34■□□□□ 0.53
CLN3-250ENST00000636839 COPZ1P61923 177 aa18.34■□□□□ 0.53
CLN3-250ENST00000636839 PRAMEF20Q5VT98 475 aa18.34■□□□□ 0.53
CLN3-250ENST00000636839 ULK3Q6PHR2 472 aa18.34■□□□□ 0.53
CLN3-250ENST00000636839 KIF18BQ86Y91 864 aa18.34■□□□□ 0.53
CLN3-250ENST00000636839 RAB43Q86YS6 212 aa18.34■□□□□ 0.53
CLN3-250ENST00000636839 OIT3Q8WWZ8 545 aa18.34■□□□□ 0.53
CLN3-250ENST00000636839 ASB15Q8WXK1 588 aa18.34■□□□□ 0.53
CLN3-250ENST00000636839 TTC9Q92623 222 aa18.34■□□□□ 0.53
CLN3-250ENST00000636839 NPAS1Q99742 590 aa18.34■□□□□ 0.53
CLN3-250ENST00000636839 POLR2J2Q9GZM3 115 aaKnown RBP18.34■□□□□ 0.53
CLN3-250ENST00000636839 MED11Q9P086 117 aa18.34■□□□□ 0.53
CLN3-250ENST00000636839 RPS6KB2Q9UBS0 482 aa18.34■□□□□ 0.53
CLN3-250ENST00000636839 M0R129 80 aa18.33■□□□□ 0.53
CLN3-250ENST00000636839 CDC40O60508 579 aaKnown RBP eCLIP18.33■□□□□ 0.53
CLN3-250ENST00000636839 DXOO77932 396 aaKnown RBP18.33■□□□□ 0.53
CLN3-250ENST00000636839 NUDT14O95848 222 aa18.33■□□□□ 0.53
CLN3-250ENST00000636839 MAKP20794 623 aa18.33■□□□□ 0.53
CLN3-250ENST00000636839 SSR4P51571 173 aa18.33■□□□□ 0.53
CLN3-250ENST00000636839 COL28A1Q2UY09 1125 aa18.33■□□□□ 0.53
CLN3-250ENST00000636839 CTU2Q2VPK5 515 aaKnown RBP18.33■□□□□ 0.53
CLN3-250ENST00000636839 DCAF10Q5QP82 559 aa18.33■□□□□ 0.53
CLN3-250ENST00000636839 KRT80Q6KB66 452 aa18.33■□□□□ 0.53
CLN3-250ENST00000636839 LINC00114Q6XXX2 140 aa18.33■□□□□ 0.53
CLN3-250ENST00000636839 ZNF440Q8IYI8 595 aa18.33■□□□□ 0.53
CLN3-250ENST00000636839 SLC15A4Q8N697 577 aa18.33■□□□□ 0.53
CLN3-250ENST00000636839 PIGXQ8TBF5 258 aa18.33■□□□□ 0.53
CLN3-250ENST00000636839 RNF138Q8WVD3 245 aa18.33■□□□□ 0.53
CLN3-250ENST00000636839 RELTQ969Z4 430 aa18.33■□□□□ 0.53
CLN3-250ENST00000636839 METTL7AQ9H8H3 244 aa18.33■□□□□ 0.53
CLN3-250ENST00000636839 EVA1AQ9H8M9 152 aa18.33■□□□□ 0.53
CLN3-250ENST00000636839 NDRG4Q9ULP0 352 aaKnown RBP18.33■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms