RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 OR4F6Q8NGB9 312 aa12.64□□□□□ -0.39
CLN3-249ENST00000636685 GPR151Q8TDV0 419 aa12.64□□□□□ -0.39
CLN3-249ENST00000636685 C16orf78Q8WTQ4 265 aa12.64□□□□□ -0.39
CLN3-249ENST00000636685 CDKL2Q92772 493 aa12.64□□□□□ -0.39
CLN3-249ENST00000636685 APH1AQ96BI3 265 aa12.64□□□□□ -0.39
CLN3-249ENST00000636685 FAHD2AQ96GK7 314 aa12.64□□□□□ -0.39
CLN3-249ENST00000636685 PLK3Q9H4B4 646 aa12.64□□□□□ -0.39
CLN3-249ENST00000636685 UNKLQ9H9P5 680 aaKnown RBP12.64□□□□□ -0.39
CLN3-249ENST00000636685 BRF2Q9HAW0 419 aa12.64□□□□□ -0.39
CLN3-249ENST00000636685 EQTNQ9NQ60 294 aa12.64□□□□□ -0.39
CLN3-249ENST00000636685 SLC17A5Q9NRA2 495 aa12.64□□□□□ -0.39
CLN3-249ENST00000636685 CA10Q9NS85 328 aa12.64□□□□□ -0.39
CLN3-249ENST00000636685 ASB6Q9NWX5 421 aa12.64□□□□□ -0.39
CLN3-249ENST00000636685 PCDHB14Q9Y5E9 798 aa12.64□□□□□ -0.39
CLN3-249ENST00000636685 PTGDR2Q9Y5Y4 395 aa12.64□□□□□ -0.39
CLN3-249ENST00000636685 E7ESA3 106 aa12.63□□□□□ -0.39
CLN3-249ENST00000636685 PCDH7O60245 1069 aa12.63□□□□□ -0.39
CLN3-249ENST00000636685 MSMBP08118 114 aa12.63□□□□□ -0.39
CLN3-249ENST00000636685 NTF4P34130 210 aa12.63□□□□□ -0.39
CLN3-249ENST00000636685 SPRP35270 261 aaPredicted RBP12.63□□□□□ -0.39
CLN3-249ENST00000636685 RNF144AP50876 292 aaPredicted RBP12.63□□□□□ -0.39
CLN3-249ENST00000636685 ZNF117Q03924 483 aa12.63□□□□□ -0.39
CLN3-249ENST00000636685 GGTA1PQ4G0N0 100 aa12.63□□□□□ -0.39
CLN3-249ENST00000636685 VHLLQ6RSH7 139 aa12.63□□□□□ -0.39
CLN3-249ENST00000636685 RPS27LQ71UM5 84 aaKnown RBP12.63□□□□□ -0.39
CLN3-249ENST00000636685 OR52E4Q8NGH9 312 aa12.63□□□□□ -0.39
CLN3-249ENST00000636685 WDR60Q8WVS4 1066 aa12.63□□□□□ -0.39
CLN3-249ENST00000636685 NEU4Q8WWR8 484 aaPredicted RBP12.63□□□□□ -0.39
CLN3-249ENST00000636685 ZNF524Q96C55 264 aa12.63□□□□□ -0.39
CLN3-249ENST00000636685 ELP4Q96EB1 424 aa12.63□□□□□ -0.39
CLN3-249ENST00000636685 NARFLQ9H6Q4 476 aa12.63□□□□□ -0.39
CLN3-249ENST00000636685 NMRK1Q9NWW6 199 aa12.63□□□□□ -0.39
CLN3-249ENST00000636685 VPS29Q9UBQ0 182 aa12.63□□□□□ -0.39
CLN3-249ENST00000636685 PCTPQ9UKL6 214 aa12.63□□□□□ -0.39
CLN3-249ENST00000636685 WBP11Q9Y2W2 641 aaKnown RBP12.63□□□□□ -0.39
CLN3-249ENST00000636685 AMDHD2Q9Y303 409 aa12.63□□□□□ -0.39
CLN3-249ENST00000636685 NOSIPQ9Y314 301 aaKnown RBP12.63□□□□□ -0.39
CLN3-249ENST00000636685 PPIAL4AQ9Y536 164 aa12.63□□□□□ -0.39
CLN3-249ENST00000636685 GNG14A0A1W2PPG7 69 aa12.62□□□□□ -0.39
CLN3-249ENST00000636685 KIF2AO00139 706 aaPredicted RBP12.62□□□□□ -0.39
CLN3-249ENST00000636685 PPP6CO00743 305 aa12.62□□□□□ -0.39
CLN3-249ENST00000636685 H6PDO95479 791 aa12.62□□□□□ -0.39
CLN3-249ENST00000636685 NUDT14O95848 222 aa12.62□□□□□ -0.39
CLN3-249ENST00000636685 CHN1P15882 459 aa12.62□□□□□ -0.39
CLN3-249ENST00000636685 DDX5P17844 614 aaKnown RBP12.62□□□□□ -0.39
CLN3-249ENST00000636685 HEPACAMQ14CZ8 416 aa12.62□□□□□ -0.39
CLN3-249ENST00000636685 EFNB3Q15768 340 aa12.62□□□□□ -0.39
CLN3-249ENST00000636685 METTL2BQ6P1Q9 378 aaKnown RBP12.62□□□□□ -0.39
CLN3-249ENST00000636685 MISPQ8IVT2 679 aa12.62□□□□□ -0.39
CLN3-249ENST00000636685 SPC24Q8NBT2 197 aa12.62□□□□□ -0.39
CLN3-249ENST00000636685 CLDND2Q8NHS1 167 aa12.62□□□□□ -0.39
CLN3-249ENST00000636685 UBASH3BQ8TF42 649 aa12.62□□□□□ -0.39
CLN3-249ENST00000636685 PHF21BQ96EK2 531 aa12.62□□□□□ -0.39
CLN3-249ENST00000636685 PKP2Q99959 881 aa12.62□□□□□ -0.39
CLN3-249ENST00000636685 C1QTNF5Q9BXJ0 243 aa12.62□□□□□ -0.39
CLN3-249ENST00000636685 GLIPR2Q9H4G4 154 aa12.62□□□□□ -0.39
CLN3-249ENST00000636685 MED29Q9NX70 200 aa12.62□□□□□ -0.39
CLN3-249ENST00000636685 MALT1Q9UDY8 824 aa12.62□□□□□ -0.39
CLN3-249ENST00000636685 IGKV3D-15A0A087WSY6 115 aa12.61□□□□□ -0.39
CLN3-249ENST00000636685 FAM159BA6NKW6 160 aa12.61□□□□□ -0.39
CLN3-249ENST00000636685 SCDO00767 359 aa12.61□□□□□ -0.39
CLN3-249ENST00000636685 TP73O15350 636 aa12.61□□□□□ -0.39
CLN3-249ENST00000636685 SLITRK5O94991 958 aa12.61□□□□□ -0.39
CLN3-249ENST00000636685 NKX2-2O95096 273 aa12.61□□□□□ -0.39
CLN3-249ENST00000636685 HPGDP15428 266 aa12.61□□□□□ -0.39
CLN3-249ENST00000636685 PRKCAP17252 672 aa12.61□□□□□ -0.39
CLN3-249ENST00000636685 SELENBP1Q13228 472 aa12.61□□□□□ -0.39
CLN3-249ENST00000636685 FAM83EQ2M2I3 478 aa12.61□□□□□ -0.39
CLN3-249ENST00000636685 GRTP1Q5TC63 336 aa12.61□□□□□ -0.39
CLN3-249ENST00000636685 LETMD1Q6P1Q0 360 aa12.61□□□□□ -0.39
CLN3-249ENST00000636685 CBLN3Q6UW01 205 aa12.61□□□□□ -0.39
CLN3-249ENST00000636685 CARM1Q86X55 608 aa12.61□□□□□ -0.39
CLN3-249ENST00000636685 CTAGE3PQ8IX95 158 aa12.61□□□□□ -0.39
CLN3-249ENST00000636685 FBXO30Q8TB52 745 aa12.61□□□□□ -0.39
CLN3-249ENST00000636685 PHOSPHO1Q8TCT1 267 aa12.61□□□□□ -0.39
CLN3-249ENST00000636685 OR5B2Q96R09 309 aa12.61□□□□□ -0.39
CLN3-249ENST00000636685 EBPLQ9BY08 206 aa12.61□□□□□ -0.39
CLN3-249ENST00000636685 UBQLN4Q9NRR5 601 aa12.61□□□□□ -0.39
CLN3-249ENST00000636685 DDX28Q9NUL7 540 aaKnown RBP12.61□□□□□ -0.39
CLN3-249ENST00000636685 EMC3Q9P0I2 261 aa12.61□□□□□ -0.39
CLN3-249ENST00000636685 GPC6Q9Y625 555 aaPredicted RBP12.61□□□□□ -0.39
CLN3-249ENST00000636685 IGHV1-18A0A0C4DH31 117 aa12.6□□□□□ -0.39
CLN3-249ENST00000636685 TCRBV9S1A1TA0A576 114 aa12.6□□□□□ -0.39
CLN3-249ENST00000636685 TTC36A6NLP5 189 aa12.6□□□□□ -0.39
CLN3-249ENST00000636685 PDLIM1O00151 329 aa12.6□□□□□ -0.39
CLN3-249ENST00000636685 KLF11O14901 512 aa12.6□□□□□ -0.39
CLN3-249ENST00000636685 PDE5AO76074 875 aa12.6□□□□□ -0.39
CLN3-249ENST00000636685 KCNK2O95069 426 aa12.6□□□□□ -0.39
CLN3-249ENST00000636685 BCL10O95999 233 aa12.6□□□□□ -0.39
CLN3-249ENST00000636685 PNPP00491 289 aa12.6□□□□□ -0.39
CLN3-249ENST00000636685 ERCC1P07992 297 aaPredicted RBP12.6□□□□□ -0.39
CLN3-249ENST00000636685 TSPAN8P19075 237 aa12.6□□□□□ -0.39
CLN3-249ENST00000636685 MAP3K8P41279 467 aa12.6□□□□□ -0.39
CLN3-249ENST00000636685 KHKP50053 298 aa12.6□□□□□ -0.39
CLN3-249ENST00000636685 ABLIM2Q6H8Q1 611 aa12.6□□□□□ -0.39
CLN3-249ENST00000636685 BPIFB2Q8N4F0 458 aa12.6□□□□□ -0.39
CLN3-249ENST00000636685 MMGT1Q8N4V1 131 aa12.6□□□□□ -0.39
CLN3-249ENST00000636685 ZNF527Q8NB42 609 aa12.6□□□□□ -0.39
CLN3-249ENST00000636685 OR51F2Q8NH61 342 aa12.6□□□□□ -0.39
CLN3-249ENST00000636685 CDC26Q8NHZ8 85 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms