RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 CRISP3P54108 245 aa12.16□□□□□ -0.46
LINC00540-202ENST00000616974 QPRTQ15274 297 aa12.16□□□□□ -0.46
LINC00540-202ENST00000616974 CTU2Q2VPK5 515 aaKnown RBP12.16□□□□□ -0.46
LINC00540-202ENST00000616974 SERPINA11Q86U17 422 aa12.16□□□□□ -0.46
LINC00540-202ENST00000616974 WDR60Q8WVS4 1066 aa12.16□□□□□ -0.46
LINC00540-202ENST00000616974 SARAFQ96BY9 339 aa12.16□□□□□ -0.46
LINC00540-202ENST00000616974 ZNF583Q96ND8 569 aa12.16□□□□□ -0.46
LINC00540-202ENST00000616974 UCK2Q9BZX2 261 aa12.16□□□□□ -0.46
LINC00540-202ENST00000616974 HOXD1Q9GZZ0 328 aa12.16□□□□□ -0.46
LINC00540-202ENST00000616974 PTGES2Q9H7Z7 377 aa12.16□□□□□ -0.46
LINC00540-202ENST00000616974 ZNF443Q9Y2A4 671 aaPredicted RBP12.16□□□□□ -0.46
LINC00540-202ENST00000616974 CDHR4A6H8M9 788 aa12.15□□□□□ -0.46
LINC00540-202ENST00000616974 OR14I1A6ND48 311 aa12.15□□□□□ -0.46
LINC00540-202ENST00000616974 NTN1O95631 604 aa12.15□□□□□ -0.46
LINC00540-202ENST00000616974 NID1P14543 1247 aa12.15□□□□□ -0.46
LINC00540-202ENST00000616974 LCN1P31025 176 aa12.15□□□□□ -0.46
LINC00540-202ENST00000616974 FOXF2Q12947 444 aa12.15□□□□□ -0.46
LINC00540-202ENST00000616974 CYP51A1Q16850 503 aa12.15□□□□□ -0.46
LINC00540-202ENST00000616974 ZNF630Q2M218 657 aaPredicted RBP12.15□□□□□ -0.46
LINC00540-202ENST00000616974 WLSQ5T9L3 541 aa12.15□□□□□ -0.46
LINC00540-202ENST00000616974 EIF3MQ7L2H7 374 aaKnown RBP12.15□□□□□ -0.46
LINC00540-202ENST00000616974 TSPYL5Q86VY4 417 aaPredicted RBP12.15□□□□□ -0.46
LINC00540-202ENST00000616974 C9orf106Q8NAJ2 232 aa12.15□□□□□ -0.46
LINC00540-202ENST00000616974 OR5W2Q8NH69 310 aa12.15□□□□□ -0.46
LINC00540-202ENST00000616974 SSC4DQ8WTU2 575 aa12.15□□□□□ -0.46
LINC00540-202ENST00000616974 PSMG3-AS1Q96PY0 264 aa12.15□□□□□ -0.46
LINC00540-202ENST00000616974 TRIB1Q96RU8 372 aa12.15□□□□□ -0.46
LINC00540-202ENST00000616974 GPATCH1Q9BRR8 931 aaKnown RBP12.15□□□□□ -0.46
LINC00540-202ENST00000616974 NSRP1Q9H0G5 558 aaKnown RBP12.15□□□□□ -0.46
LINC00540-202ENST00000616974 TP63Q9H3D4 680 aaPredicted RBP12.15□□□□□ -0.46
LINC00540-202ENST00000616974 MTHFD2LQ9H903 347 aaPredicted RBP12.15□□□□□ -0.46
LINC00540-202ENST00000616974 RYDENQ9NUL5 291 aaKnown RBP12.15□□□□□ -0.46
LINC00540-202ENST00000616974 RNF6Q9Y252 685 aa12.15□□□□□ -0.46
LINC00540-202ENST00000616974 A0A0G2JNJ9 132 aa12.14□□□□□ -0.47
LINC00540-202ENST00000616974 A0A0J9YW62 118 aa12.14□□□□□ -0.47
LINC00540-202ENST00000616974 CYSRT1A8MQ03 144 aa12.14□□□□□ -0.47
LINC00540-202ENST00000616974 C19orf84I3L1E1 186 aa12.14□□□□□ -0.47
LINC00540-202ENST00000616974 NME4O00746 187 aa12.14□□□□□ -0.47
LINC00540-202ENST00000616974 TPST2O60704 377 aa12.14□□□□□ -0.47
LINC00540-202ENST00000616974 CCDC22O60826 627 aa12.14□□□□□ -0.47
LINC00540-202ENST00000616974 ESRRAP11474 423 aaPredicted RBP12.14□□□□□ -0.47
LINC00540-202ENST00000616974 CCNA2P20248 432 aa12.14□□□□□ -0.47
LINC00540-202ENST00000616974 POU3F2P20265 443 aaPredicted RBP12.14□□□□□ -0.47
LINC00540-202ENST00000616974 ACAA2P42765 397 aaKnown RBP12.14□□□□□ -0.47
LINC00540-202ENST00000616974 NUDT2P50583 147 aa12.14□□□□□ -0.47
LINC00540-202ENST00000616974 ZNF41P51814 821 aaPredicted RBP12.14□□□□□ -0.47
LINC00540-202ENST00000616974 SESN3P58005 492 aa12.14□□□□□ -0.47
LINC00540-202ENST00000616974 IRX1P78414 480 aaPredicted RBP12.14□□□□□ -0.47
LINC00540-202ENST00000616974 DUSP7Q16829 419 aa12.14□□□□□ -0.47
LINC00540-202ENST00000616974 C8orf82Q6P1X6 216 aaPredicted RBP12.14□□□□□ -0.47
LINC00540-202ENST00000616974 MTERF4Q7Z6M4 381 aaKnown RBP12.14□□□□□ -0.47
LINC00540-202ENST00000616974 LACC1Q8IV20 430 aa12.14□□□□□ -0.47
LINC00540-202ENST00000616974 GCNT2Q8N0V5 402 aa12.14□□□□□ -0.47
LINC00540-202ENST00000616974 RNF148Q8N7C7 305 aa12.14□□□□□ -0.47
LINC00540-202ENST00000616974 RP9Q8TA86 221 aaKnown RBP12.14□□□□□ -0.47
LINC00540-202ENST00000616974 FIG4Q92562 907 aa12.14□□□□□ -0.47
LINC00540-202ENST00000616974 LAT2Q9GZY6 243 aa12.14□□□□□ -0.47
LINC00540-202ENST00000616974 Q9UFV3 132 aa12.14□□□□□ -0.47
LINC00540-202ENST00000616974 ARL2BPQ9Y2Y0 163 aa12.14□□□□□ -0.47
LINC00540-202ENST00000616974 CADP27708 2225 aa12.14□□□□□ -0.47
LINC00540-202ENST00000616974 A0A1W2PNR3 127 aa12.14□□□□□ -0.47
LINC00540-202ENST00000616974 NKX2-6A6NCS4 301 aa12.14□□□□□ -0.47
LINC00540-202ENST00000616974 CLCA1A8K7I4 914 aa12.14□□□□□ -0.47
LINC00540-202ENST00000616974 EVPLLA8MZ36 301 aa12.14□□□□□ -0.47
LINC00540-202ENST00000616974 TMEM229AB2RXF0 380 aa12.14□□□□□ -0.47
LINC00540-202ENST00000616974 E9PLN8 166 aa12.14□□□□□ -0.47
LINC00540-202ENST00000616974 BCKDKO14874 412 aa12.14□□□□□ -0.47
LINC00540-202ENST00000616974 DNAJA2O60884 412 aa12.14□□□□□ -0.47
LINC00540-202ENST00000616974 FAM107AO95990 144 aa12.14□□□□□ -0.47
LINC00540-202ENST00000616974 PABPC4LP0CB38 370 aaKnown RBP12.14□□□□□ -0.47
LINC00540-202ENST00000616974 TNFRSF1BP20333 461 aa12.14□□□□□ -0.47
LINC00540-202ENST00000616974 SLC6A8P48029 635 aa12.14□□□□□ -0.47
LINC00540-202ENST00000616974 SNTB1Q13884 538 aaKnown RBP12.14□□□□□ -0.47
LINC00540-202ENST00000616974 REEP3Q6NUK4 255 aa12.14□□□□□ -0.47
LINC00540-202ENST00000616974 B3GNT6Q6ZMB0 384 aa12.14□□□□□ -0.47
LINC00540-202ENST00000616974 MRGPRGQ86SM5 289 aa12.14□□□□□ -0.47
LINC00540-202ENST00000616974 CALHM3Q86XJ0 350 aa12.14□□□□□ -0.47
LINC00540-202ENST00000616974 RBM45Q8IUH3 476 aaKnown RBP12.14□□□□□ -0.47
LINC00540-202ENST00000616974 SLC15A3Q8IY34 581 aa12.14□□□□□ -0.47
LINC00540-202ENST00000616974 GTPBP8Q8N3Z3 284 aaPredicted RBP12.14□□□□□ -0.47
LINC00540-202ENST00000616974 GPR32P1Q8NGA4 272 aa12.14□□□□□ -0.47
LINC00540-202ENST00000616974 OR4D11Q8NGI4 311 aa12.14□□□□□ -0.47
LINC00540-202ENST00000616974 VKORC1Q9BQB6 163 aa12.14□□□□□ -0.47
LINC00540-202ENST00000616974 OR11A1Q9GZK7 315 aa12.14□□□□□ -0.47
LINC00540-202ENST00000616974 TMEM38AQ9H6F2 299 aa12.14□□□□□ -0.47
LINC00540-202ENST00000616974 POLE3Q9NRF9 147 aa12.14□□□□□ -0.47
LINC00540-202ENST00000616974 GPC6Q9Y625 555 aaPredicted RBP12.14□□□□□ -0.47
LINC00540-202ENST00000616974 EIF1AYO14602 144 aaKnown RBP12.13□□□□□ -0.47
LINC00540-202ENST00000616974 TNFSF11O14788 317 aa12.13□□□□□ -0.47
LINC00540-202ENST00000616974 FUT4P22083 530 aa12.13□□□□□ -0.47
LINC00540-202ENST00000616974 MSX2P35548 267 aaPredicted RBP12.13□□□□□ -0.47
LINC00540-202ENST00000616974 IDH2P48735 452 aaKnown RBP12.13□□□□□ -0.47
LINC00540-202ENST00000616974 SLC7A2P52569 658 aa12.13□□□□□ -0.47
LINC00540-202ENST00000616974 PCBP3P57721 371 aaKnown RBP12.13□□□□□ -0.47
LINC00540-202ENST00000616974 GANABQ14697 944 aaKnown RBP12.13□□□□□ -0.47
LINC00540-202ENST00000616974 ZNF311Q5JNZ3 666 aa12.13□□□□□ -0.47
LINC00540-202ENST00000616974 C1orf185Q5T7R7 199 aa12.13□□□□□ -0.47
LINC00540-202ENST00000616974 NET1Q7Z628 596 aaPredicted RBP12.13□□□□□ -0.47
LINC00540-202ENST00000616974 ADGRE4PQ86SQ3 457 aa12.13□□□□□ -0.47
LINC00540-202ENST00000616974 PEX5LQ8IYB4 626 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms