RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 CD300LDQ6UXZ3 194 aa13.04□□□□□ -0.32
USP39-220ENST00000613444 PRICKLE2Q7Z3G6 844 aa13.04□□□□□ -0.32
USP39-220ENST00000613444 RPS19BP1Q86WX3 136 aaKnown RBP13.04□□□□□ -0.32
USP39-220ENST00000613444 RAB43Q86YS6 212 aa13.04□□□□□ -0.32
USP39-220ENST00000613444 PSMF1Q92530 271 aa13.04□□□□□ -0.32
USP39-220ENST00000613444 GATA6Q92908 595 aa13.04□□□□□ -0.32
USP39-220ENST00000613444 TMCO6Q96DC7 493 aa13.04□□□□□ -0.32
USP39-220ENST00000613444 RIBC2Q9H4K1 309 aa13.04□□□□□ -0.32
USP39-220ENST00000613444 CDCP1Q9H5V8 836 aa13.04□□□□□ -0.32
USP39-220ENST00000613444 DCDC2BA2VCK2 349 aa13.03□□□□□ -0.32
USP39-220ENST00000613444 KLF4O43474 513 aa13.03□□□□□ -0.32
USP39-220ENST00000613444 SCO2O43819 266 aa13.03□□□□□ -0.32
USP39-220ENST00000613444 LINGO3P0C6S8 592 aa13.03□□□□□ -0.32
USP39-220ENST00000613444 LIPCP11150 499 aa13.03□□□□□ -0.32
USP39-220ENST00000613444 LIFP15018 202 aa13.03□□□□□ -0.32
USP39-220ENST00000613444 ST13P50502 369 aaKnown RBP13.03□□□□□ -0.32
USP39-220ENST00000613444 BICRALQ6AI39 1079 aa13.03□□□□□ -0.32
USP39-220ENST00000613444 ZNF730Q6ZMV8 503 aa13.03□□□□□ -0.32
USP39-220ENST00000613444 MBOAT2Q6ZWT7 520 aa13.03□□□□□ -0.32
USP39-220ENST00000613444 MUS81Q96NY9 551 aa13.03□□□□□ -0.32
USP39-220ENST00000613444 NR1H4Q96RI1 486 aaPredicted RBP13.03□□□□□ -0.32
USP39-220ENST00000613444 GPN2Q9H9Y4 310 aaPredicted RBP13.03□□□□□ -0.32
USP39-220ENST00000613444 NDRG4Q9ULP0 352 aaKnown RBP13.03□□□□□ -0.32
USP39-220ENST00000613444 CNTRLQ7Z7A1 2325 aa13.03□□□□□ -0.32
USP39-220ENST00000613444 HCRTR2O43614 444 aa13.03□□□□□ -0.32
USP39-220ENST00000613444 PIP5K1CO60331 668 aa13.03□□□□□ -0.32
USP39-220ENST00000613444 ENDOUP21128 410 aaKnown RBP13.03□□□□□ -0.32
USP39-220ENST00000613444 UGT2B15P54855 530 aa13.03□□□□□ -0.32
USP39-220ENST00000613444 ULK3Q6PHR2 472 aa13.03□□□□□ -0.32
USP39-220ENST00000613444 MEX3DQ86XN8 651 aaKnown RBP13.03□□□□□ -0.32
USP39-220ENST00000613444 NRMQ8IXM6 262 aa13.03□□□□□ -0.32
USP39-220ENST00000613444 C3orf49Q96BT1 292 aa13.03□□□□□ -0.32
USP39-220ENST00000613444 SH3YL1Q96HL8 342 aaPredicted RBP13.03□□□□□ -0.32
USP39-220ENST00000613444 PITX2Q99697 317 aa13.03□□□□□ -0.32
USP39-220ENST00000613444 ZNF556Q9HAH1 456 aa13.03□□□□□ -0.32
USP39-220ENST00000613444 GALNT9Q9HCQ5 603 aa13.03□□□□□ -0.32
USP39-220ENST00000613444 HRH3Q9Y5N1 445 aa13.03□□□□□ -0.32
USP39-220ENST00000613444 CHCHD2Q9Y6H1 151 aaPredicted RBP13.03□□□□□ -0.32
USP39-220ENST00000613444 CDH2P19022 906 aaPredicted RBP13.02□□□□□ -0.33
USP39-220ENST00000613444 PTNP21246 168 aa13.02□□□□□ -0.33
USP39-220ENST00000613444 GSSP48637 474 aa13.02□□□□□ -0.33
USP39-220ENST00000613444 IDH2P48735 452 aaKnown RBP13.02□□□□□ -0.33
USP39-220ENST00000613444 MYBPC1Q00872 1141 aa13.02□□□□□ -0.33
USP39-220ENST00000613444 ALG10BQ5I7T1 473 aa13.02□□□□□ -0.33
USP39-220ENST00000613444 SWT1Q5T5J6 900 aaKnown RBP13.02□□□□□ -0.33
USP39-220ENST00000613444 Q6ZPB1 254 aaPredicted RBP13.02□□□□□ -0.33
USP39-220ENST00000613444 CCDC71Q8IV32 467 aaPredicted RBP13.02□□□□□ -0.33
USP39-220ENST00000613444 CADM2Q8N3J6 435 aa13.02□□□□□ -0.33
USP39-220ENST00000613444 ZNF555Q8NEP9 628 aa13.02□□□□□ -0.33
USP39-220ENST00000613444 DUSP19Q8WTR2 217 aa13.02□□□□□ -0.33
USP39-220ENST00000613444 TMEM239Q8WW34 195 aa13.02□□□□□ -0.33
USP39-220ENST00000613444 NTNG2Q96CW9 530 aa13.02□□□□□ -0.33
USP39-220ENST00000613444 UCK2Q9BZX2 261 aa13.02□□□□□ -0.33
USP39-220ENST00000613444 SH2D2AQ9NP31 389 aa13.02□□□□□ -0.33
USP39-220ENST00000613444 LOC400499M0QZD8 3231 aa13.02□□□□□ -0.33
USP39-220ENST00000613444 SSR4P51571 173 aa13.01□□□□□ -0.33
USP39-220ENST00000613444 RPP38P78345 283 aaKnown RBP13.01□□□□□ -0.33
USP39-220ENST00000613444 SRSF6Q13247 344 aaKnown RBP13.01□□□□□ -0.33
USP39-220ENST00000613444 KEAP1Q14145 624 aa13.01□□□□□ -0.33
USP39-220ENST00000613444 TOMM34Q15785 309 aaPredicted RBP13.01□□□□□ -0.33
USP39-220ENST00000613444 DCAF10Q5QP82 559 aa13.01□□□□□ -0.33
USP39-220ENST00000613444 ZNF468Q5VIY5 522 aaPredicted RBP13.01□□□□□ -0.33
USP39-220ENST00000613444 ZNF691Q5VV52 312 aa13.01□□□□□ -0.33
USP39-220ENST00000613444 B3GNTL1Q67FW5 361 aaPredicted RBP13.01□□□□□ -0.33
USP39-220ENST00000613444 WBP2NLQ6ICG8 309 aa13.01□□□□□ -0.33
USP39-220ENST00000613444 OPN5Q6U736 354 aa13.01□□□□□ -0.33
USP39-220ENST00000613444 MISPQ8IVT2 679 aa13.01□□□□□ -0.33
USP39-220ENST00000613444 RNF113BQ8IZP6 322 aaKnown RBP13.01□□□□□ -0.33
USP39-220ENST00000613444 TMCO5AQ8N6Q1 288 aa13.01□□□□□ -0.33
USP39-220ENST00000613444 OR5W2Q8NH69 310 aa13.01□□□□□ -0.33
USP39-220ENST00000613444 BRIX1Q8TDN6 353 aaKnown RBP13.01□□□□□ -0.33
USP39-220ENST00000613444 MPP4Q96JB8 637 aa13.01□□□□□ -0.33
USP39-220ENST00000613444 HRASLS5Q96KN8 279 aa13.01□□□□□ -0.33
USP39-220ENST00000613444 IP6K3Q96PC2 410 aa13.01□□□□□ -0.33
USP39-220ENST00000613444 MEPEQ9NQ76 525 aaPredicted RBP13.01□□□□□ -0.33
USP39-220ENST00000613444 C20orf141Q9NUB4 165 aa13.01□□□□□ -0.33
USP39-220ENST00000613444 CFAP47Q6ZTR5 3102 aa13.01□□□□□ -0.33
USP39-220ENST00000613444 C2orf72A6NCS6 295 aa13.01□□□□□ -0.33
USP39-220ENST00000613444 BCKDKO14874 412 aa13.01□□□□□ -0.33
USP39-220ENST00000613444 IGFBP1P08833 259 aaPredicted RBP13.01□□□□□ -0.33
USP39-220ENST00000613444 OSMP13725 252 aa13.01□□□□□ -0.33
USP39-220ENST00000613444 CHMP24386 653 aa13.01□□□□□ -0.33
USP39-220ENST00000613444 CASP3P42574 277 aa13.01□□□□□ -0.33
USP39-220ENST00000613444 SLC6A8P48029 635 aa13.01□□□□□ -0.33
USP39-220ENST00000613444 P2RX1P51575 399 aa13.01□□□□□ -0.33
USP39-220ENST00000613444 CCR4P51679 360 aa13.01□□□□□ -0.33
USP39-220ENST00000613444 ISL1P61371 349 aa13.01□□□□□ -0.33
USP39-220ENST00000613444 COX10Q12887 443 aa13.01□□□□□ -0.33
USP39-220ENST00000613444 RAPSNQ13702 412 aa13.01□□□□□ -0.33
USP39-220ENST00000613444 TMEM81Q6P7N7 255 aa13.01□□□□□ -0.33
USP39-220ENST00000613444 IL20RBQ6UXL0 311 aa13.01□□□□□ -0.33
USP39-220ENST00000613444 VASH2Q86V25 355 aa13.01□□□□□ -0.33
USP39-220ENST00000613444 SIRT6Q8N6T7 355 aa13.01□□□□□ -0.33
USP39-220ENST00000613444 PFN4Q8NHR9 129 aa13.01□□□□□ -0.33
USP39-220ENST00000613444 PIGXQ8TBF5 258 aa13.01□□□□□ -0.33
USP39-220ENST00000613444 DNAJA4Q8WW22 397 aaPredicted RBP13.01□□□□□ -0.33
USP39-220ENST00000613444 KIAA1143Q96AT1 154 aaPredicted RBP13.01□□□□□ -0.33
USP39-220ENST00000613444 FAM46AQ96IP4 442 aaKnown RBP13.01□□□□□ -0.33
USP39-220ENST00000613444 ADAM19Q9H013 955 aa13.01□□□□□ -0.33
USP39-220ENST00000613444 RYDENQ9NUL5 291 aaKnown RBP13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms