RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 HARBI1Q96MB7 349 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 C12orf66Q96MD2 445 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 WFIKKN1Q96NZ8 548 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 QRFPRQ96P65 431 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 GPR78Q96P69 363 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 ERP44Q9BS26 406 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 TBCDQ9BTW9 1192 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 KATNB1Q9BVA0 655 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 GATA5Q9BWX5 397 aaPredicted RBP3.84□□□□□ -1.79
LINC00540-201ENST00000611481 WWP1Q9H0M0 922 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 ASB8Q9H765 288 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 EXO5Q9H790 373 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 UPF2Q9HAU5 1272 aaKnown RBP3.84□□□□□ -1.79
LINC00540-201ENST00000611481 ZNF304Q9HCX3 659 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 Q9N2J8 555 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 NGBQ9NPG2 151 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 EURLQ9NYK6 297 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 PCSK1NQ9UHG2 260 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 FAM153AQ9UHL3 310 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 TRMT6Q9UJA5 497 aaKnown RBP3.84□□□□□ -1.79
LINC00540-201ENST00000611481 PTBP2Q9UKA9 531 aaKnown RBP3.84□□□□□ -1.79
LINC00540-201ENST00000611481 ACSL5Q9ULC5 683 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 STAP1Q9ULZ2 295 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 MYO6Q9UM54 1294 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 NEU3Q9UQ49 428 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 CEPT1Q9Y6K0 416 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 A0A0B4J293 547 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 A0A1B0GWJ7 208 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 CFAP73A6NFT4 308 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 C2orf74A8MZ97 194 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 HS3ST1O14792 307 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 ST8SIA3O43173 380 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 SSX5O60225 188 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 GMFGO60234 142 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 PRAMEF11O60813 436 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 CDK14O94921 469 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 PGLSO95336 258 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 CLDN7O95471 211 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 PTBP3O95758 552 aaKnown RBP3.83□□□□□ -1.8
LINC00540-201ENST00000611481 EDN2P20800 178 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 TIA1P31483 386 aaKnown RBP eCLIP3.83□□□□□ -1.8
LINC00540-201ENST00000611481 OPRM1P35372 400 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 SOX6P35712 828 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 WNT5AP41221 380 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 PRCPP42785 496 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 RFX2P48378 723 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 VPS41P49754 854 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 GPR143P51810 404 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 ZNF75DP51815 510 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 MRPS34P82930 218 aaKnown RBP3.83□□□□□ -1.8
LINC00540-201ENST00000611481 GAB1Q13480 694 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 PARP15Q460N3 678 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 ATP13A5Q4VNC0 1218 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 FASTKD1Q53R41 847 aaKnown RBP3.83□□□□□ -1.8
LINC00540-201ENST00000611481 WASHC2DQ5SRD0 308 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 SPATA46Q5T0L3 261 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 HENMT1Q5T8I9 393 aaKnown RBP3.83□□□□□ -1.8
LINC00540-201ENST00000611481 ALS2CLQ60I27 953 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 CLEC2AQ6UVW9 174 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 SPESP1Q6UW49 350 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 PLXDC2Q6UX71 529 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 ZBTB49Q6ZSB9 765 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 INTS8Q75QN2 995 aaKnown RBP3.83□□□□□ -1.8
LINC00540-201ENST00000611481 MDGA2Q7Z553 956 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 AMZ2Q86W34 360 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 DNAJC22Q8N4W6 341 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 TTC29Q8NA56 475 aaPredicted RBP3.83□□□□□ -1.8
LINC00540-201ENST00000611481 CCNYQ8ND76 341 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 OR14L1PQ8NHC6 308 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 ZNF418Q8TF45 676 aaPredicted RBP3.83□□□□□ -1.8
LINC00540-201ENST00000611481 HEXDCQ8WVB3 486 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 ATL1Q8WXF7 558 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 ZNF75CPQ92670 426 aaPredicted RBP3.83□□□□□ -1.8
LINC00540-201ENST00000611481 SLAMF9Q96A28 289 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 NXNL1Q96CM4 212 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 PHF21BQ96EK2 531 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 ZC3HAV1LQ96H79 300 aaKnown RBP3.83□□□□□ -1.8
LINC00540-201ENST00000611481 NSMCE2Q96MF7 247 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 BTBD9Q96Q07 612 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 FRG2BQ96QU4 278 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 CPXM1Q96SM3 734 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 MED18Q9BUE0 208 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 ABHD14AQ9BUJ0 271 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 IFT27Q9BW83 186 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 CARD6Q9BX69 1037 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 SPATA16Q9BXB7 569 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 NUF2Q9BZD4 464 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 P2RY12Q9H244 342 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 XKR8Q9H6D3 395 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 METTL17Q9H7H0 456 aaPredicted RBP3.83□□□□□ -1.8
LINC00540-201ENST00000611481 ZDHHC11Q9H8X9 412 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 CENPMQ9NSP4 180 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 STAU2Q9NUL3 570 aaKnown RBP eCLIP3.83□□□□□ -1.8
LINC00540-201ENST00000611481 FAM118AQ9NWS6 357 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 NMRK1Q9NWW6 199 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 KLHL21Q9UJP4 597 aa3.83□□□□□ -1.8
LINC00540-201ENST00000611481 LSM4Q9Y4Z0 139 aaKnown RBP3.83□□□□□ -1.8
LINC00540-201ENST00000611481 A0A0B4J203 849 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 A0A0G2JPF8 293 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 C2orf92A0A1B0GVN3 265 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms