RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 A0A0J9YW62 118 aa12.8□□□□□ -0.36
SHKBP1-217ENST00000598558 CDHR4A6H8M9 788 aa12.8□□□□□ -0.36
SHKBP1-217ENST00000598558 CCT8L1PA6NM43 557 aa12.8□□□□□ -0.36
SHKBP1-217ENST00000598558 FIGNL2A6NMB9 653 aa12.8□□□□□ -0.36
SHKBP1-217ENST00000598558 FRS3O43559 492 aa12.8□□□□□ -0.36
SHKBP1-217ENST00000598558 NUDT14O95848 222 aa12.8□□□□□ -0.36
SHKBP1-217ENST00000598558 FAM107AO95990 144 aa12.8□□□□□ -0.36
SHKBP1-217ENST00000598558 NPPAP01160 153 aa12.8□□□□□ -0.36
SHKBP1-217ENST00000598558 PABPC4LP0CB38 370 aaKnown RBP12.8□□□□□ -0.36
SHKBP1-217ENST00000598558 PEPDP12955 493 aa12.8□□□□□ -0.36
SHKBP1-217ENST00000598558 POU3F2P20265 443 aaPredicted RBP12.8□□□□□ -0.36
SHKBP1-217ENST00000598558 CPA2P48052 419 aa12.8□□□□□ -0.36
SHKBP1-217ENST00000598558 ZNF41P51814 821 aaPredicted RBP12.8□□□□□ -0.36
SHKBP1-217ENST00000598558 CRYBA2P53672 197 aa12.8□□□□□ -0.36
SHKBP1-217ENST00000598558 PCBP3P57721 371 aaKnown RBP12.8□□□□□ -0.36
SHKBP1-217ENST00000598558 SESN3P58005 492 aa12.8□□□□□ -0.36
SHKBP1-217ENST00000598558 CTU2Q2VPK5 515 aaKnown RBP12.8□□□□□ -0.36
SHKBP1-217ENST00000598558 REEP3Q6NUK4 255 aa12.8□□□□□ -0.36
SHKBP1-217ENST00000598558 ENPP6Q6UWR7 440 aa12.8□□□□□ -0.36
SHKBP1-217ENST00000598558 B3GNT6Q6ZMB0 384 aa12.8□□□□□ -0.36
SHKBP1-217ENST00000598558 MRGPRGQ86SM5 289 aa12.8□□□□□ -0.36
SHKBP1-217ENST00000598558 LIX1LQ8IVB5 337 aa12.8□□□□□ -0.36
SHKBP1-217ENST00000598558 METTL25Q8N6Q8 603 aa12.8□□□□□ -0.36
SHKBP1-217ENST00000598558 ANKS4BQ8N8V4 417 aa12.8□□□□□ -0.36
SHKBP1-217ENST00000598558 NAXEQ8NCW5 288 aa12.8□□□□□ -0.36
SHKBP1-217ENST00000598558 TOR1AIP2Q8NFQ8 470 aa12.8□□□□□ -0.36
SHKBP1-217ENST00000598558 TNIP2Q8NFZ5 429 aa12.8□□□□□ -0.36
SHKBP1-217ENST00000598558 OR8J3Q8NGG0 315 aa12.8□□□□□ -0.36
SHKBP1-217ENST00000598558 BBS10Q8TAM1 723 aa12.8□□□□□ -0.36
SHKBP1-217ENST00000598558 ZPLD1Q8TCW7 415 aa12.8□□□□□ -0.36
SHKBP1-217ENST00000598558 SMPDL3BQ92485 455 aa12.8□□□□□ -0.36
SHKBP1-217ENST00000598558 ZBTB8AQ96BR9 441 aa12.8□□□□□ -0.36
SHKBP1-217ENST00000598558 ZNF845Q96IR2 970 aaPredicted RBP12.8□□□□□ -0.36
SHKBP1-217ENST00000598558 ADGRG7Q96K78 797 aa12.8□□□□□ -0.36
SHKBP1-217ENST00000598558 TRIB1Q96RU8 372 aa12.8□□□□□ -0.36
SHKBP1-217ENST00000598558 SPATA9Q9BWV2 254 aa12.8□□□□□ -0.36
SHKBP1-217ENST00000598558 TMEM185BQ9H7F4 350 aa12.8□□□□□ -0.36
SHKBP1-217ENST00000598558 EXOSC3Q9NQT5 275 aaKnown RBP12.8□□□□□ -0.36
SHKBP1-217ENST00000598558 CORO2BQ9UQ03 480 aa12.8□□□□□ -0.36
SHKBP1-217ENST00000598558 RNF6Q9Y252 685 aa12.8□□□□□ -0.36
SHKBP1-217ENST00000598558 A0A0G2JNJ9 132 aa12.79□□□□□ -0.36
SHKBP1-217ENST00000598558 A1L4Q6 167 aa12.79□□□□□ -0.36
SHKBP1-217ENST00000598558 CLCA1A8K7I4 914 aa12.79□□□□□ -0.36
SHKBP1-217ENST00000598558 C5orf58C9J3I9 102 aa12.79□□□□□ -0.36
SHKBP1-217ENST00000598558 SEC14L5O43304 696 aa12.79□□□□□ -0.36
SHKBP1-217ENST00000598558 TGM6O95932 706 aa12.79□□□□□ -0.36
SHKBP1-217ENST00000598558 THBS1P07996 1170 aa12.79□□□□□ -0.36
SHKBP1-217ENST00000598558 GABRA1P14867 456 aa12.79□□□□□ -0.36
SHKBP1-217ENST00000598558 ETS2P15036 469 aa12.79□□□□□ -0.36
SHKBP1-217ENST00000598558 ZNF17P17021 662 aa12.79□□□□□ -0.36
SHKBP1-217ENST00000598558 DLX5P56178 289 aa12.79□□□□□ -0.36
SHKBP1-217ENST00000598558 HOXC5Q00444 222 aa12.79□□□□□ -0.36
SHKBP1-217ENST00000598558 DMTNQ08495 405 aa12.79□□□□□ -0.36
SHKBP1-217ENST00000598558 EPS8Q12929 822 aa12.79□□□□□ -0.36
SHKBP1-217ENST00000598558 CBFBQ13951 182 aa12.79□□□□□ -0.36
SHKBP1-217ENST00000598558 GNA13Q14344 377 aa12.79□□□□□ -0.36
SHKBP1-217ENST00000598558 CYP51A1Q16850 503 aa12.79□□□□□ -0.36
SHKBP1-217ENST00000598558 LIN52Q52LA3 116 aa12.79□□□□□ -0.36
SHKBP1-217ENST00000598558 ZNF311Q5JNZ3 666 aa12.79□□□□□ -0.36
SHKBP1-217ENST00000598558 NSUN5P2Q63ZY6 315 aa12.79□□□□□ -0.36
SHKBP1-217ENST00000598558 HIST2H2BCQ6DN03 193 aa12.79□□□□□ -0.36
SHKBP1-217ENST00000598558 POMZP3Q6PJE2 187 aa12.79□□□□□ -0.36
SHKBP1-217ENST00000598558 SERPINA11Q86U17 422 aa12.79□□□□□ -0.36
SHKBP1-217ENST00000598558 CMIPQ8IY22 773 aa12.79□□□□□ -0.36
SHKBP1-217ENST00000598558 SLC15A3Q8IY34 581 aa12.79□□□□□ -0.36
SHKBP1-217ENST00000598558 PM20D2Q8IYS1 436 aa12.79□□□□□ -0.36
SHKBP1-217ENST00000598558 FITM2Q8N6M3 262 aa12.79□□□□□ -0.36
SHKBP1-217ENST00000598558 C9orf106Q8NAJ2 232 aa12.79□□□□□ -0.36
SHKBP1-217ENST00000598558 PCYOX1LQ8NBM8 494 aa12.79□□□□□ -0.36
SHKBP1-217ENST00000598558 HIPK4Q8NE63 616 aa12.79□□□□□ -0.36
SHKBP1-217ENST00000598558 PRR14Q9BWN1 585 aa12.79□□□□□ -0.36
SHKBP1-217ENST00000598558 HHATLQ9HCP6 504 aa12.79□□□□□ -0.36
SHKBP1-217ENST00000598558 ACER3Q9NUN7 267 aa12.79□□□□□ -0.36
SHKBP1-217ENST00000598558 GID8Q9NWU2 228 aa12.79□□□□□ -0.36
SHKBP1-217ENST00000598558 Q9UFV3 132 aa12.79□□□□□ -0.36
SHKBP1-217ENST00000598558 AP4B1Q9Y6B7 739 aa12.79□□□□□ -0.36
SHKBP1-217ENST00000598558 BAHCC1Q9P281 2608 aa12.79□□□□□ -0.36
SHKBP1-217ENST00000598558 FREM3P0C091 2139 aa12.79□□□□□ -0.36
SHKBP1-217ENST00000598558 TMEM247A6NEH6 219 aa12.78□□□□□ -0.36
SHKBP1-217ENST00000598558 CD8B2A6NJW9 211 aa12.78□□□□□ -0.36
SHKBP1-217ENST00000598558 TMEM229AB2RXF0 380 aa12.78□□□□□ -0.36
SHKBP1-217ENST00000598558 H0Y3Z8 333 aa12.78□□□□□ -0.36
SHKBP1-217ENST00000598558 M0QX08 132 aa12.78□□□□□ -0.36
SHKBP1-217ENST00000598558 MFN2O95140 757 aa12.78□□□□□ -0.36
SHKBP1-217ENST00000598558 OPN1SWP03999 348 aa12.78□□□□□ -0.36
SHKBP1-217ENST00000598558 HOXD4P09016 255 aaPredicted RBP12.78□□□□□ -0.36
SHKBP1-217ENST00000598558 PGCP20142 388 aa12.78□□□□□ -0.36
SHKBP1-217ENST00000598558 PRDX6P30041 224 aa12.78□□□□□ -0.36
SHKBP1-217ENST00000598558 CEACAM8P31997 349 aaPredicted RBP12.78□□□□□ -0.36
SHKBP1-217ENST00000598558 GCKP35557 465 aa12.78□□□□□ -0.36
SHKBP1-217ENST00000598558 IDH2P48735 452 aaKnown RBP12.78□□□□□ -0.36
SHKBP1-217ENST00000598558 PER3P56645 1201 aa12.78□□□□□ -0.36
SHKBP1-217ENST00000598558 RAC1P63000 192 aa12.78□□□□□ -0.36
SHKBP1-217ENST00000598558 RBBP4Q09028 425 aa12.78□□□□□ -0.36
SHKBP1-217ENST00000598558 VMACQ2NL98 169 aa12.78□□□□□ -0.36
SHKBP1-217ENST00000598558 RNF220Q5VTB9 566 aa12.78□□□□□ -0.36
SHKBP1-217ENST00000598558 TMEM211Q6ICI0 200 aa12.78□□□□□ -0.36
SHKBP1-217ENST00000598558 PLEKHM3Q6ZWE6 761 aa12.78□□□□□ -0.36
SHKBP1-217ENST00000598558 ADGRG3Q86Y34 549 aa12.78□□□□□ -0.36
SHKBP1-217ENST00000598558 GRAMD2AQ8IUY3 354 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms