RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 ZFP3Q96NJ6 502 aa12.47□□□□□ -0.41
UPF1-205ENST00000598209 ZNF317Q96PQ6 595 aaPredicted RBP12.47□□□□□ -0.41
UPF1-205ENST00000598209 TMEM185BQ9H7F4 350 aa12.47□□□□□ -0.41
UPF1-205ENST00000598209 KLHL14Q9P2G3 628 aa12.47□□□□□ -0.41
UPF1-205ENST00000598209 ZNF629Q9UEG4 869 aaPredicted RBP12.47□□□□□ -0.41
UPF1-205ENST00000598209 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.47□□□□□ -0.41
UPF1-205ENST00000598209 NDUFAF1Q9Y375 327 aa12.47□□□□□ -0.41
UPF1-205ENST00000598209 DSPPQ9NZW4 1301 aa12.46□□□□□ -0.41
UPF1-205ENST00000598209 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.46□□□□□ -0.41
UPF1-205ENST00000598209 SLC22A20A6NK97 555 aa12.46□□□□□ -0.41
UPF1-205ENST00000598209 ANGPT2O15123 496 aa12.46□□□□□ -0.41
UPF1-205ENST00000598209 EFNA2O43921 213 aa12.46□□□□□ -0.41
UPF1-205ENST00000598209 DNAJA2O60884 412 aa12.46□□□□□ -0.41
UPF1-205ENST00000598209 NTN1O95631 604 aa12.46□□□□□ -0.41
UPF1-205ENST00000598209 DBIP07108 87 aaKnown RBP12.46□□□□□ -0.41
UPF1-205ENST00000598209 COX6B1P14854 86 aa12.46□□□□□ -0.41
UPF1-205ENST00000598209 IL7RP16871 459 aa12.46□□□□□ -0.41
UPF1-205ENST00000598209 PGCP20142 388 aa12.46□□□□□ -0.41
UPF1-205ENST00000598209 IL11P20809 199 aa12.46□□□□□ -0.41
UPF1-205ENST00000598209 AGFG1P52594 562 aaKnown RBP12.46□□□□□ -0.41
UPF1-205ENST00000598209 FOXF2Q12947 444 aa12.46□□□□□ -0.41
UPF1-205ENST00000598209 GNA13Q14344 377 aa12.46□□□□□ -0.41
UPF1-205ENST00000598209 SGCBQ16585 318 aa12.46□□□□□ -0.41
UPF1-205ENST00000598209 SLC25A53Q5H9E4 307 aa12.46□□□□□ -0.41
UPF1-205ENST00000598209 RPS26P11Q5JNZ5 115 aaPredicted RBP12.46□□□□□ -0.41
UPF1-205ENST00000598209 POMZP3Q6PJE2 187 aa12.46□□□□□ -0.41
UPF1-205ENST00000598209 DLEU7Q6UYE1 221 aa12.46□□□□□ -0.41
UPF1-205ENST00000598209 DHDDSQ86SQ9 333 aa12.46□□□□□ -0.41
UPF1-205ENST00000598209 RETREG3Q86VR2 466 aa12.46□□□□□ -0.41
UPF1-205ENST00000598209 CMIPQ8IY22 773 aa12.46□□□□□ -0.41
UPF1-205ENST00000598209 PEX5LQ8IYB4 626 aa12.46□□□□□ -0.41
UPF1-205ENST00000598209 LILRA2Q8N149 483 aa12.46□□□□□ -0.41
UPF1-205ENST00000598209 FIG4Q92562 907 aa12.46□□□□□ -0.41
UPF1-205ENST00000598209 CNOT9Q92600 299 aaKnown RBP12.46□□□□□ -0.41
UPF1-205ENST00000598209 MAL2Q969L2 176 aa12.46□□□□□ -0.41
UPF1-205ENST00000598209 MARVELD3Q96A59 401 aa12.46□□□□□ -0.41
UPF1-205ENST00000598209 INTS12Q96CB8 462 aaKnown RBP12.46□□□□□ -0.41
UPF1-205ENST00000598209 TMEM19Q96HH6 336 aa12.46□□□□□ -0.41
UPF1-205ENST00000598209 ADGRG7Q96K78 797 aa12.46□□□□□ -0.41
UPF1-205ENST00000598209 TREX2Q9BQ50 279 aaPredicted RBP12.46□□□□□ -0.41
UPF1-205ENST00000598209 A4GALTQ9NPC4 353 aa12.46□□□□□ -0.41
UPF1-205ENST00000598209 EXOSC3Q9NQT5 275 aaKnown RBP12.46□□□□□ -0.41
UPF1-205ENST00000598209 NPDC1Q9NQX5 325 aaPredicted RBP12.46□□□□□ -0.41
UPF1-205ENST00000598209 MRGBPQ9NV56 204 aa12.46□□□□□ -0.41
UPF1-205ENST00000598209 GMEB1Q9Y692 573 aa12.46□□□□□ -0.41
UPF1-205ENST00000598209 A0A0J9YW62 118 aa12.45□□□□□ -0.42
UPF1-205ENST00000598209 EVPLLA8MZ36 301 aa12.45□□□□□ -0.42
UPF1-205ENST00000598209 ETV2O00321 342 aaPredicted RBP12.45□□□□□ -0.42
UPF1-205ENST00000598209 TNFSF11O14788 317 aa12.45□□□□□ -0.42
UPF1-205ENST00000598209 IL18BPO95998 194 aa12.45□□□□□ -0.42
UPF1-205ENST00000598209 NID1P14543 1247 aa12.45□□□□□ -0.42
UPF1-205ENST00000598209 SHC1P29353 583 aa12.45□□□□□ -0.42
UPF1-205ENST00000598209 RYKP34925 604 aa12.45□□□□□ -0.42
UPF1-205ENST00000598209 SFTPDP35247 375 aa12.45□□□□□ -0.42
UPF1-205ENST00000598209 OPRM1P35372 400 aa12.45□□□□□ -0.42
UPF1-205ENST00000598209 EIF1AXP47813 144 aaKnown RBP12.45□□□□□ -0.42
UPF1-205ENST00000598209 SESN3P58005 492 aa12.45□□□□□ -0.42
UPF1-205ENST00000598209 PLAURQ03405 335 aa12.45□□□□□ -0.42
UPF1-205ENST00000598209 PON3Q15166 354 aa12.45□□□□□ -0.42
UPF1-205ENST00000598209 CTU2Q2VPK5 515 aaKnown RBP12.45□□□□□ -0.42
UPF1-205ENST00000598209 GCNT6Q5T4J0 391 aa12.45□□□□□ -0.42
UPF1-205ENST00000598209 MRPL2Q5T653 305 aaKnown RBP12.45□□□□□ -0.42
UPF1-205ENST00000598209 MEX3BQ6ZN04 569 aaKnown RBP12.45□□□□□ -0.42
UPF1-205ENST00000598209 ESPNLQ6ZVH7 1005 aa12.45□□□□□ -0.42
UPF1-205ENST00000598209 VRK2Q86Y07 508 aa12.45□□□□□ -0.42
UPF1-205ENST00000598209 GCNT2Q8N0V5 402 aa12.45□□□□□ -0.42
UPF1-205ENST00000598209 C10orf111Q8N326 155 aa12.45□□□□□ -0.42
UPF1-205ENST00000598209 DPP10Q8N608 796 aa12.45□□□□□ -0.42
UPF1-205ENST00000598209 OR52P1PQ8NH57 321 aa12.45□□□□□ -0.42
UPF1-205ENST00000598209 OR10D3Q8NH80 312 aa12.45□□□□□ -0.42
UPF1-205ENST00000598209 OR2V1Q8NHB1 315 aa12.45□□□□□ -0.42
UPF1-205ENST00000598209 FNDC9Q8TBE3 224 aa12.45□□□□□ -0.42
UPF1-205ENST00000598209 C10orf82Q8WW14 230 aa12.45□□□□□ -0.42
UPF1-205ENST00000598209 TMEM234Q8WY98 164 aa12.45□□□□□ -0.42
UPF1-205ENST00000598209 ST8SIA1Q92185 356 aa12.45□□□□□ -0.42
UPF1-205ENST00000598209 KLHL15Q96M94 604 aa12.45□□□□□ -0.42
UPF1-205ENST00000598209 CPPED1Q9BRF8 314 aaPredicted RBP12.45□□□□□ -0.42
UPF1-205ENST00000598209 ENKD1Q9H0I2 346 aa12.45□□□□□ -0.42
UPF1-205ENST00000598209 IKZF5Q9H5V7 419 aa12.45□□□□□ -0.42
UPF1-205ENST00000598209 SAR1AQ9NR31 198 aa12.45□□□□□ -0.42
UPF1-205ENST00000598209 DNAJB12Q9NXW2 375 aaKnown RBP12.45□□□□□ -0.42
UPF1-205ENST00000598209 CORO2BQ9UQ03 480 aa12.45□□□□□ -0.42
UPF1-205ENST00000598209 ZNF175Q9Y473 711 aa12.45□□□□□ -0.42
UPF1-205ENST00000598209 A0A0G2JPF8 293 aa12.44□□□□□ -0.42
UPF1-205ENST00000598209 GJE1A6NN92 205 aa12.44□□□□□ -0.42
UPF1-205ENST00000598209 HNRNPCL2B2RXH8 293 aa12.44□□□□□ -0.42
UPF1-205ENST00000598209 HNRNPCL3B7ZW38 293 aa12.44□□□□□ -0.42
UPF1-205ENST00000598209 C5orf58C9J3I9 102 aa12.44□□□□□ -0.42
UPF1-205ENST00000598209 ADAMDEC1O15204 470 aa12.44□□□□□ -0.42
UPF1-205ENST00000598209 CXCL13O43927 109 aa12.44□□□□□ -0.42
UPF1-205ENST00000598209 HNRNPCL1O60812 293 aaKnown RBP12.44□□□□□ -0.42
UPF1-205ENST00000598209 HNRNPCL4P0DMR1 293 aa12.44□□□□□ -0.42
UPF1-205ENST00000598209 ARAFP10398 606 aa12.44□□□□□ -0.42
UPF1-205ENST00000598209 GPX2P18283 190 aa12.44□□□□□ -0.42
UPF1-205ENST00000598209 SLC6A8P48029 635 aa12.44□□□□□ -0.42
UPF1-205ENST00000598209 ASCL1P50553 236 aa12.44□□□□□ -0.42
UPF1-205ENST00000598209 KLF10Q13118 480 aa12.44□□□□□ -0.42
UPF1-205ENST00000598209 SELENBP1Q13228 472 aa12.44□□□□□ -0.42
UPF1-205ENST00000598209 NFYCQ13952 458 aa12.44□□□□□ -0.42
UPF1-205ENST00000598209 LIN52Q52LA3 116 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms