RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 TRBV4-1A0A0J9YWV2 114 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 A0A1B0GWA3 101 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 A0A1B0GX12 115 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 ANKRD33BA6NCL7 494 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 NUDT14O95848 222 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 THY1P04216 161 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 PGCP20142 388 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 IDH2P48735 452 aaKnown RBP13.36□□□□□ -0.27
VRK3-212ENST00000596814 HMGA2P52926 109 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 TLE3Q04726 772 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 LAPTM4AQ15012 233 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 DCST1Q5T197 706 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 OTUD3Q5T2D3 398 aaPredicted RBP13.36□□□□□ -0.27
VRK3-212ENST00000596814 OR5M10Q6IEU7 315 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 LRRC69Q6ZNQ3 347 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 ZNF227Q86WZ6 799 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 HS3ST5Q8IZT8 346 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 CBR4Q8N4T8 237 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 ZNF563Q8TA94 476 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 FRMD6Q96NE9 622 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 ALPK1Q96QP1 1244 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 RNF32Q9H0A6 362 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 VCXQ9H320 206 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 COQ10BQ9H8M1 238 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 PLA2G3Q9NZ20 509 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 SELENONQ9NZV5 590 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 PDP1Q9P0J1 537 aaPredicted RBP13.36□□□□□ -0.27
VRK3-212ENST00000596814 TMCC3Q9ULS5 477 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 SLC7A7Q9UM01 511 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 MAGED1Q9Y5V3 778 aaPredicted RBP13.36□□□□□ -0.27
VRK3-212ENST00000596814 NCOR2Q9Y618 2525 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 ZFHX4Q86UP3 3567 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 OR5H15A6NDH6 313 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 ANKUB1A6NFN9 424 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 G3V3Y1 287 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 SOCS2O14508 198 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 CHP2O43745 196 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 CEACAM4O75871 244 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 NEURL1O76050 574 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 MSX1P28360 303 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 MASP1P48740 699 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 OR1C1Q15619 314 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 ALG10BQ5I7T1 473 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 WBP2NLQ6ICG8 309 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 SPINK14Q6IE38 97 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 RNF217Q8TC41 542 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 SLC7A13Q8TCU3 470 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 GIPC3Q8TF64 312 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 BARD1Q99728 777 aaKnown RBP13.36□□□□□ -0.27
VRK3-212ENST00000596814 KLHDC3Q9BQ90 382 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 GABARAPL1Q9H0R8 117 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 PROK2Q9HC23 129 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 C8orf4Q9NR00 106 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 MED11Q9P086 117 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 RAXQ9Y2V3 346 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 HRH3Q9Y5N1 445 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 CNTRLQ7Z7A1 2325 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 URB1O60287 2271 aaKnown RBP13.36□□□□□ -0.27
VRK3-212ENST00000596814 B4DXG7 233 aa13.35□□□□□ -0.27
VRK3-212ENST00000596814 EI24O14681 340 aa13.35□□□□□ -0.27
VRK3-212ENST00000596814 SNPHO15079 494 aa13.35□□□□□ -0.27
VRK3-212ENST00000596814 PEX1O43933 1283 aa13.35□□□□□ -0.27
VRK3-212ENST00000596814 SLC25A12O75746 678 aa13.35□□□□□ -0.27
VRK3-212ENST00000596814 CCNB2O95067 398 aa13.35□□□□□ -0.27
VRK3-212ENST00000596814 SNX4O95219 450 aa13.35□□□□□ -0.27
VRK3-212ENST00000596814 RASAL1O95294 804 aa13.35□□□□□ -0.27
VRK3-212ENST00000596814 MICAQ29983 383 aa13.35□□□□□ -0.27
VRK3-212ENST00000596814 ULK3Q6PHR2 472 aa13.35□□□□□ -0.27
VRK3-212ENST00000596814 TBPL2Q6SJ96 375 aa13.35□□□□□ -0.27
VRK3-212ENST00000596814 PACS2Q86VP3 889 aa13.35□□□□□ -0.27
VRK3-212ENST00000596814 OR10G2Q8NGC3 310 aa13.35□□□□□ -0.27
VRK3-212ENST00000596814 OR4K17Q8NGC6 315 aa13.35□□□□□ -0.27
VRK3-212ENST00000596814 GPR119Q8TDV5 335 aa13.35□□□□□ -0.27
VRK3-212ENST00000596814 DNAJA4Q8WW22 397 aaPredicted RBP13.35□□□□□ -0.27
VRK3-212ENST00000596814 SLC38A4Q969I6 547 aa13.35□□□□□ -0.27
VRK3-212ENST00000596814 NTNG2Q96CW9 530 aa13.35□□□□□ -0.27
VRK3-212ENST00000596814 SIGLEC12Q96PQ1 595 aa13.35□□□□□ -0.27
VRK3-212ENST00000596814 SLC29A1Q99808 456 aa13.35□□□□□ -0.27
VRK3-212ENST00000596814 FUZQ9BT04 418 aa13.35□□□□□ -0.27
VRK3-212ENST00000596814 TAS2R10Q9NYW0 307 aa13.35□□□□□ -0.27
VRK3-212ENST00000596814 PCNX3Q9H6A9 2034 aa13.35□□□□□ -0.27
VRK3-212ENST00000596814 SH3PXD2BA1X283 911 aa13.34□□□□□ -0.27
VRK3-212ENST00000596814 GNB5O14775 395 aa13.34□□□□□ -0.27
VRK3-212ENST00000596814 LYPD3O95274 346 aa13.34□□□□□ -0.27
VRK3-212ENST00000596814 UCNP55089 124 aa13.34□□□□□ -0.27
VRK3-212ENST00000596814 ARG2P78540 354 aa13.34□□□□□ -0.27
VRK3-212ENST00000596814 QPRTQ15274 297 aa13.34□□□□□ -0.27
VRK3-212ENST00000596814 SEC23BQ15437 767 aa13.34□□□□□ -0.27
VRK3-212ENST00000596814 INPP5JQ15735 1006 aaPredicted RBP13.34□□□□□ -0.27
VRK3-212ENST00000596814 SWT1Q5T5J6 900 aaKnown RBP13.34□□□□□ -0.27
VRK3-212ENST00000596814 PPP4R4Q6NUP7 873 aa13.34□□□□□ -0.27
VRK3-212ENST00000596814 PODNL1Q6PEZ8 512 aa13.34□□□□□ -0.27
VRK3-212ENST00000596814 NKAIN4Q8IVV8 208 aa13.34□□□□□ -0.27
VRK3-212ENST00000596814 GALNT4Q8N4A0 578 aa13.34□□□□□ -0.27
VRK3-212ENST00000596814 PACRGLQ8N7B6 248 aa13.34□□□□□ -0.27
VRK3-212ENST00000596814 FADS6Q8N9I5 356 aa13.34□□□□□ -0.27
VRK3-212ENST00000596814 WDSUB1Q8N9V3 476 aa13.34□□□□□ -0.27
VRK3-212ENST00000596814 OR2M3Q8NG83 312 aa13.34□□□□□ -0.27
VRK3-212ENST00000596814 C3orf49Q96BT1 292 aa13.34□□□□□ -0.27
VRK3-212ENST00000596814 TMEM41AQ96HV5 264 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms