RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 POC1BQ8TC44 478 aa15.58■□□□□ 0.08
SHKBP1-212ENST00000596163 CGREF1Q99674 301 aa15.58■□□□□ 0.08
SHKBP1-212ENST00000596163 TREX2Q9BQ50 279 aaPredicted RBP15.58■□□□□ 0.08
SHKBP1-212ENST00000596163 BCL2L10Q9HD36 194 aa15.58■□□□□ 0.08
SHKBP1-212ENST00000596163 SERINC1Q9NRX5 453 aa15.58■□□□□ 0.08
SHKBP1-212ENST00000596163 ZNF175Q9Y473 711 aa15.58■□□□□ 0.08
SHKBP1-212ENST00000596163 PTPN13Q12923 2485 aa15.57■□□□□ 0.08
SHKBP1-212ENST00000596163 SPTAN1Q13813 2472 aaKnown RBP15.57■□□□□ 0.08
SHKBP1-212ENST00000596163 HECTD1Q9ULT8 2610 aa15.57■□□□□ 0.08
SHKBP1-212ENST00000596163 SLC22A20A6NK97 555 aa15.57■□□□□ 0.08
SHKBP1-212ENST00000596163 FAM90A27PA6NNH2 459 aa15.57■□□□□ 0.08
SHKBP1-212ENST00000596163 BBIP1A8MTZ0 92 aa15.57■□□□□ 0.08
SHKBP1-212ENST00000596163 EIF1AYO14602 144 aaKnown RBP15.57■□□□□ 0.08
SHKBP1-212ENST00000596163 RCBTB2O95199 551 aa15.57■□□□□ 0.08
SHKBP1-212ENST00000596163 IL18BPO95998 194 aa15.57■□□□□ 0.08
SHKBP1-212ENST00000596163 NPPAP01160 153 aa15.57■□□□□ 0.08
SHKBP1-212ENST00000596163 NID1P14543 1247 aa15.57■□□□□ 0.08
SHKBP1-212ENST00000596163 RPS4Y1P22090 263 aaKnown RBP15.57■□□□□ 0.08
SHKBP1-212ENST00000596163 SUCLG1P53597 346 aaKnown RBP15.57■□□□□ 0.08
SHKBP1-212ENST00000596163 CLDN15P56746 228 aa15.57■□□□□ 0.08
SHKBP1-212ENST00000596163 CLDN20P56880 219 aa15.57■□□□□ 0.08
SHKBP1-212ENST00000596163 FOXF1Q12946 379 aa15.57■□□□□ 0.08
SHKBP1-212ENST00000596163 CYLC2Q14093 348 aaPredicted RBP15.57■□□□□ 0.08
SHKBP1-212ENST00000596163 ESPNLQ6ZVH7 1005 aa15.57■□□□□ 0.08
SHKBP1-212ENST00000596163 CPLX4Q7Z7G2 160 aa15.57■□□□□ 0.08
SHKBP1-212ENST00000596163 LILRA2Q8N149 483 aa15.57■□□□□ 0.08
SHKBP1-212ENST00000596163 FAM71CQ8NEG0 241 aa15.57■□□□□ 0.08
SHKBP1-212ENST00000596163 C10orf82Q8WW14 230 aa15.57■□□□□ 0.08
SHKBP1-212ENST00000596163 ANKRD27Q96NW4 1050 aa15.57■□□□□ 0.08
SHKBP1-212ENST00000596163 SH3GL1Q99961 368 aa15.57■□□□□ 0.08
SHKBP1-212ENST00000596163 QRSL1Q9H0R6 528 aaKnown RBP15.57■□□□□ 0.08
SHKBP1-212ENST00000596163 TIGARQ9NQ88 270 aa15.57■□□□□ 0.08
SHKBP1-212ENST00000596163 CLCF1Q9UBD9 225 aa15.57■□□□□ 0.08
SHKBP1-212ENST00000596163 CAPN7Q9Y6W3 813 aa15.57■□□□□ 0.08
SHKBP1-212ENST00000596163 DSPPQ9NZW4 1301 aa15.57■□□□□ 0.08
SHKBP1-212ENST00000596163 SPTBN1Q01082 2364 aaKnown RBP15.57■□□□□ 0.08
SHKBP1-212ENST00000596163 CYSRT1A8MQ03 144 aa15.56■□□□□ 0.08
SHKBP1-212ENST00000596163 ETV2O00321 342 aaPredicted RBP15.56■□□□□ 0.08
SHKBP1-212ENST00000596163 SYNGR4O95473 234 aa15.56■□□□□ 0.08
SHKBP1-212ENST00000596163 CRHP06850 196 aa15.56■□□□□ 0.08
SHKBP1-212ENST00000596163 THBS1P07996 1170 aa15.56■□□□□ 0.08
SHKBP1-212ENST00000596163 NUDT7P0C024 238 aa15.56■□□□□ 0.08
SHKBP1-212ENST00000596163 TMIGD3P0DMS9 266 aaPredicted RBP15.56■□□□□ 0.08
SHKBP1-212ENST00000596163 FCGR2AP12318 317 aa15.56■□□□□ 0.08
SHKBP1-212ENST00000596163 CD1EP15812 388 aa15.56■□□□□ 0.08
SHKBP1-212ENST00000596163 SLC6A2P23975 617 aa15.56■□□□□ 0.08
SHKBP1-212ENST00000596163 COL8A1P27658 744 aa15.56■□□□□ 0.08
SHKBP1-212ENST00000596163 HTR3AP46098 478 aa15.56■□□□□ 0.08
SHKBP1-212ENST00000596163 SELENBP1Q13228 472 aa15.56■□□□□ 0.08
SHKBP1-212ENST00000596163 MAPK11Q15759 364 aa15.56■□□□□ 0.08
SHKBP1-212ENST00000596163 TOMM34Q15785 309 aaPredicted RBP15.56■□□□□ 0.08
SHKBP1-212ENST00000596163 REEP3Q6NUK4 255 aa15.56■□□□□ 0.08
SHKBP1-212ENST00000596163 SPATA21Q7Z572 469 aa15.56■□□□□ 0.08
SHKBP1-212ENST00000596163 HMGN2P46Q86SG4 172 aa15.56■□□□□ 0.08
SHKBP1-212ENST00000596163 RETREG3Q86VR2 466 aa15.56■□□□□ 0.08
SHKBP1-212ENST00000596163 KRT73Q86Y46 540 aa15.56■□□□□ 0.08
SHKBP1-212ENST00000596163 C9orf106Q8NAJ2 232 aa15.56■□□□□ 0.08
SHKBP1-212ENST00000596163 PCYOX1LQ8NBM8 494 aa15.56■□□□□ 0.08
SHKBP1-212ENST00000596163 OR2V1Q8NHB1 315 aa15.56■□□□□ 0.08
SHKBP1-212ENST00000596163 KLHL15Q96M94 604 aa15.56■□□□□ 0.08
SHKBP1-212ENST00000596163 ELAC2Q9BQ52 826 aaKnown RBP15.56■□□□□ 0.08
SHKBP1-212ENST00000596163 SPATA5L1Q9BVQ7 753 aa15.56■□□□□ 0.08
SHKBP1-212ENST00000596163 PINK1Q9BXM7 581 aa15.56■□□□□ 0.08
SHKBP1-212ENST00000596163 PRRG4Q9BZD6 226 aa15.56■□□□□ 0.08
SHKBP1-212ENST00000596163 UCK2Q9BZX2 261 aa15.56■□□□□ 0.08
SHKBP1-212ENST00000596163 TMEM38AQ9H6F2 299 aa15.56■□□□□ 0.08
SHKBP1-212ENST00000596163 ACER3Q9NUN7 267 aa15.56■□□□□ 0.08
SHKBP1-212ENST00000596163 SPIN1Q9Y657 262 aaPredicted RBP15.56■□□□□ 0.08
SHKBP1-212ENST00000596163 FREM3P0C091 2139 aa15.56■□□□□ 0.08
SHKBP1-212ENST00000596163 ICE1Q9Y2F5 2266 aa15.55■□□□□ 0.08
SHKBP1-212ENST00000596163 GMNCA6NCL1 334 aa15.55■□□□□ 0.08
SHKBP1-212ENST00000596163 CFAP73A6NFT4 308 aa15.55■□□□□ 0.08
SHKBP1-212ENST00000596163 KDM4EB2RXH2 506 aaPredicted RBP15.55■□□□□ 0.08
SHKBP1-212ENST00000596163 ADAMDEC1O15204 470 aa15.55■□□□□ 0.08
SHKBP1-212ENST00000596163 PGM3O95394 542 aa15.55■□□□□ 0.08
SHKBP1-212ENST00000596163 ARAFP10398 606 aa15.55■□□□□ 0.08
SHKBP1-212ENST00000596163 ETS2P15036 469 aa15.55■□□□□ 0.08
SHKBP1-212ENST00000596163 BMP5P22003 454 aa15.55■□□□□ 0.08
SHKBP1-212ENST00000596163 FKBP2P26885 142 aaKnown RBP15.55■□□□□ 0.08
SHKBP1-212ENST00000596163 RYKP34925 604 aa15.55■□□□□ 0.08
SHKBP1-212ENST00000596163 APOBEC1P41238 236 aaKnown RBP15.55■□□□□ 0.08
SHKBP1-212ENST00000596163 EIF1AXP47813 144 aaKnown RBP15.55■□□□□ 0.08
SHKBP1-212ENST00000596163 CARD18P57730 90 aa15.55■□□□□ 0.08
SHKBP1-212ENST00000596163 SESN3P58005 492 aa15.55■□□□□ 0.08
SHKBP1-212ENST00000596163 CDK6Q00534 326 aa15.55■□□□□ 0.08
SHKBP1-212ENST00000596163 RBBP4Q09028 425 aa15.55■□□□□ 0.08
SHKBP1-212ENST00000596163 CDSNQ15517 529 aa15.55■□□□□ 0.08
SHKBP1-212ENST00000596163 ZNF311Q5JNZ3 666 aa15.55■□□□□ 0.08
SHKBP1-212ENST00000596163 MRPL2Q5T653 305 aaKnown RBP15.55■□□□□ 0.08
SHKBP1-212ENST00000596163 HBMQ6B0K9 141 aa15.55■□□□□ 0.08
SHKBP1-212ENST00000596163 ZNF550Q7Z398 422 aa15.55■□□□□ 0.08
SHKBP1-212ENST00000596163 GGNQ86UU5 652 aa15.55■□□□□ 0.08
SHKBP1-212ENST00000596163 CNOT9Q92600 299 aaKnown RBP15.55■□□□□ 0.08
SHKBP1-212ENST00000596163 MAL2Q969L2 176 aa15.55■□□□□ 0.08
SHKBP1-212ENST00000596163 ZNF607Q96SK3 696 aa15.55■□□□□ 0.08
SHKBP1-212ENST00000596163 KLHDC3Q9BQ90 382 aa15.55■□□□□ 0.08
SHKBP1-212ENST00000596163 CPPED1Q9BRF8 314 aaPredicted RBP15.55■□□□□ 0.08
SHKBP1-212ENST00000596163 SFXN3Q9BWM7 321 aa15.55■□□□□ 0.08
SHKBP1-212ENST00000596163 SPATA9Q9BWV2 254 aa15.55■□□□□ 0.08
SHKBP1-212ENST00000596163 GID8Q9NWU2 228 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms